RNA–Protein interactions for RNA: ENST00000553498.5

ATXN3-221, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 911 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-221ENST00000553498 AEBP2Q6ZN18 517 aaPredicted RBP22.26■■□□□ 1.15
ATXN3-221ENST00000553498 CHIC1Q5VXU3 224 aa21.49■■□□□ 1.03
ATXN3-221ENST00000553498 PHF23Q9BUL5 403 aaPredicted RBP18.93■□□□□ 0.62
ATXN3-221ENST00000553498 SENP3Q9H4L4 574 aaPredicted RBP18.81■□□□□ 0.6
ATXN3-221ENST00000553498 FOXD1Q16676 465 aa17.56■□□□□ 0.4
ATXN3-221ENST00000553498 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
ATXN3-221ENST00000553498 PPP6R1Q9UPN7 881 aa16.77■□□□□ 0.28
ATXN3-221ENST00000553498 ADRA2BP18089 450 aa16.69■□□□□ 0.26
ATXN3-221ENST00000553498 PIAS4Q8N2W9 510 aaPredicted RBP16.43■□□□□ 0.22
ATXN3-221ENST00000553498 MSH5O43196 834 aa16.19■□□□□ 0.18
ATXN3-221ENST00000553498 NISCHQ9Y2I1 1504 aa16.1■□□□□ 0.17
ATXN3-221ENST00000553498 POTEDQ86YR6 584 aa16.09■□□□□ 0.17
ATXN3-221ENST00000553498 PPP4R3CPQ6ZMV5 832 aa15.25■□□□□ 0.03
ATXN3-221ENST00000553498 MAPK8IP2Q13387 824 aaPredicted RBP15.23■□□□□ 0.03
ATXN3-221ENST00000553498 SCAF1Q9H7N4 1312 aaKnown RBP15.18■□□□□ 0.02
ATXN3-221ENST00000553498 DMRT2Q9Y5R5 561 aa15.03■□□□□ -0
ATXN3-221ENST00000553498 CNKSR2Q8WXI2 1034 aa14.86□□□□□ -0.03
ATXN3-221ENST00000553498 NCBP3Q53F19 620 aaKnown RBP14.72□□□□□ -0.05
ATXN3-221ENST00000553498 KCNA4P22459 653 aa14.69□□□□□ -0.06
ATXN3-221ENST00000553498 HOXD11P31277 338 aaPredicted RBP14.66□□□□□ -0.06
ATXN3-221ENST00000553498 RNF216Q9NWF9 866 aaPredicted RBP14.63□□□□□ -0.07
ATXN3-221ENST00000553498 NPM3O75607 178 aaKnown RBP14.6□□□□□ -0.07
ATXN3-221ENST00000553498 DNAJC5BQ9UF47 199 aa14.28□□□□□ -0.12
ATXN3-221ENST00000553498 DCAF8L1A6NGE4 600 aa14.26□□□□□ -0.13
ATXN3-221ENST00000553498 CCDC180Q9P1Z9 1646 aa13.95□□□□□ -0.18
ATXN3-221ENST00000553498 CACNB1Q02641 598 aaPredicted RBP13.94□□□□□ -0.18
ATXN3-221ENST00000553498 RNF39Q9H2S5 420 aa13.92□□□□□ -0.18
ATXN3-221ENST00000553498 SLC4A1APQ9BWU0 796 aaKnown RBP13.89□□□□□ -0.19
ATXN3-221ENST00000553498 SLC4A2P04920 1241 aa13.87□□□□□ -0.19
ATXN3-221ENST00000553498 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.86□□□□□ -0.19
ATXN3-221ENST00000553498 U3KPZ7 1027 aaPredicted RBP13.71□□□□□ -0.21
ATXN3-221ENST00000553498 C1QBPQ07021 282 aaKnown RBP13.69□□□□□ -0.22
ATXN3-221ENST00000553498 ZCCHC6Q5VYS8 1495 aaKnown RBP13.57□□□□□ -0.24
ATXN3-221ENST00000553498 ZBTB22O15209 634 aa13.56□□□□□ -0.24
ATXN3-221ENST00000553498 FOXD4L1Q9NU39 408 aa13.53□□□□□ -0.24
ATXN3-221ENST00000553498 MYCNP04198 464 aaPredicted RBP13.44□□□□□ -0.26
ATXN3-221ENST00000553498 DCAF1Q9Y4B6 1507 aa13.43□□□□□ -0.26
ATXN3-221ENST00000553498 SPINK5Q9NQ38 1064 aaPredicted RBP13.38□□□□□ -0.27
ATXN3-221ENST00000553498 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.36□□□□□ -0.27
ATXN3-221ENST00000553498 HNRNPUL2Q1KMD3 747 aaKnown RBP13.36□□□□□ -0.27
ATXN3-221ENST00000553498 SAMD1Q6SPF0 538 aaPredicted RBP13.33□□□□□ -0.28
ATXN3-221ENST00000553498 CSRNP3Q8WYN3 585 aa13.29□□□□□ -0.28
ATXN3-221ENST00000553498 CAPN15O75808 1086 aa13.26□□□□□ -0.29
ATXN3-221ENST00000553498 MYO15BQ96JP2 1530 aa13.25□□□□□ -0.29
ATXN3-221ENST00000553498 APLP2Q06481 763 aa13.24□□□□□ -0.29
ATXN3-221ENST00000553498 EHMT2Q96KQ7 1210 aa13.23□□□□□ -0.29
ATXN3-221ENST00000553498 ATF5Q9Y2D1 282 aaPredicted RBP13.19□□□□□ -0.3
ATXN3-221ENST00000553498 DSG3P32926 999 aa13.17□□□□□ -0.3
ATXN3-221ENST00000553498 DCAF8L2P0C7V8 631 aa13.15□□□□□ -0.3
ATXN3-221ENST00000553498 TRHP20396 242 aaPredicted RBP13.15□□□□□ -0.3
ATXN3-221ENST00000553498 ZNF219Q9P2Y4 722 aaPredicted RBP13.15□□□□□ -0.3
ATXN3-221ENST00000553498 ATXN8OSP0DMR3 200 aa13.1□□□□□ -0.31
ATXN3-221ENST00000553498 SHROOM4Q9ULL8 1493 aa13.07□□□□□ -0.32
ATXN3-221ENST00000553498 NACADO15069 1562 aa13.03□□□□□ -0.32
ATXN3-221ENST00000553498 ABCB7O75027 752 aa13.01□□□□□ -0.33
ATXN3-221ENST00000553498 ABCC9O60706 1549 aa12.99□□□□□ -0.33
ATXN3-221ENST00000553498 POLA2Q14181 598 aa12.93□□□□□ -0.34
ATXN3-221ENST00000553498 RB1CC1Q8TDY2 1594 aa12.85□□□□□ -0.35
ATXN3-221ENST00000553498 SCRIBQ14160 1630 aa12.74□□□□□ -0.37
ATXN3-221ENST00000553498 SUPT5HO00267 1087 aaKnown RBP12.71□□□□□ -0.37
ATXN3-221ENST00000553498 ZBTB12Q9Y330 459 aaPredicted RBP12.64□□□□□ -0.39
ATXN3-221ENST00000553498 MKRN4PQ13434 485 aaPredicted RBP12.6□□□□□ -0.39
ATXN3-221ENST00000553498 POTEHQ6S545 545 aa12.56□□□□□ -0.4
ATXN3-221ENST00000553498 RSF1Q96T23 1441 aaPredicted RBP12.54□□□□□ -0.4
ATXN3-221ENST00000553498 FBLN2P98095 1184 aa12.5□□□□□ -0.41
ATXN3-221ENST00000553498 OSCARQ8IYS5 282 aa12.49□□□□□ -0.41
ATXN3-221ENST00000553498 RBM42Q9BTD8 480 aaKnown RBP12.46□□□□□ -0.41
ATXN3-221ENST00000553498 BAZ1AQ9NRL2 1556 aaPredicted RBP12.45□□□□□ -0.42
ATXN3-221ENST00000553498 CECR2Q9BXF3 1484 aa12.41□□□□□ -0.42
ATXN3-221ENST00000553498 MROH2BQ7Z745 1585 aa12.38□□□□□ -0.43
ATXN3-221ENST00000553498 BICRAQ9NZM4 1560 aa12.37□□□□□ -0.43
ATXN3-221ENST00000553498 SPDYE2BA6NHP3 402 aa12.33□□□□□ -0.44
ATXN3-221ENST00000553498 SPDYE6P0CI01 402 aa12.33□□□□□ -0.44
ATXN3-221ENST00000553498 SPDYE2Q495Y8 402 aa12.33□□□□□ -0.44
ATXN3-221ENST00000553498 UNC13AQ9UPW8 1703 aa12.32□□□□□ -0.44
ATXN3-221ENST00000553498 AKT1S1Q96B36 256 aa12.31□□□□□ -0.44
ATXN3-221ENST00000553498 SMARCA4P51532 1647 aa12.29□□□□□ -0.44
ATXN3-221ENST00000553498 PABPN1Q86U42 306 aaKnown RBP eCLIP12.27□□□□□ -0.45
ATXN3-221ENST00000553498 SSUH2Q9Y2M2 353 aa12.27□□□□□ -0.45
ATXN3-221ENST00000553498 ZNF692Q9BU19 519 aaPredicted RBP12.24□□□□□ -0.45
ATXN3-221ENST00000553498 PEG3Q9GZU2 1588 aa12.22□□□□□ -0.45
ATXN3-221ENST00000553498 TOP2AP11388 1531 aaKnown RBP12.22□□□□□ -0.45
ATXN3-221ENST00000553498 REM2Q8IYK8 340 aaPredicted RBP12.21□□□□□ -0.45
ATXN3-221ENST00000553498 WIZO95785 1651 aa12.2□□□□□ -0.46
ATXN3-221ENST00000553498 SMARCA2P51531 1590 aa12.15□□□□□ -0.46
ATXN3-221ENST00000553498 SPDYE4A6NLX3 237 aa12.13□□□□□ -0.47
ATXN3-221ENST00000553498 ATAD2BQ9ULI0 1458 aa12.12□□□□□ -0.47
ATXN3-221ENST00000553498 PITPNM1O00562 1244 aa12.08□□□□□ -0.48
ATXN3-221ENST00000553498 CCDC88BA6NC98 1476 aa12.08□□□□□ -0.48
ATXN3-221ENST00000553498 CHRDL2Q6WN34 429 aa12.07□□□□□ -0.48
ATXN3-221ENST00000553498 NCAPD3P42695 1498 aa12.05□□□□□ -0.48
ATXN3-221ENST00000553498 BAZ1BQ9UIG0 1483 aaKnown RBP12.05□□□□□ -0.48
ATXN3-221ENST00000553498 TRIM41Q8WV44 630 aa12.04□□□□□ -0.48
ATXN3-221ENST00000553498 EIF4G1Q04637 1599 aaKnown RBP12.02□□□□□ -0.49
ATXN3-221ENST00000553498 HMGXB3Q12766 1538 aa12.01□□□□□ -0.49
ATXN3-221ENST00000553498 PROM2Q8N271 834 aa12.01□□□□□ -0.49
ATXN3-221ENST00000553498 SPDYE1Q8NFV5 336 aaPredicted RBP11.99□□□□□ -0.49
ATXN3-221ENST00000553498 FKBP8Q14318 412 aa11.94□□□□□ -0.5
ATXN3-221ENST00000553498 CLEC11AQ9Y240 323 aa11.93□□□□□ -0.5
ATXN3-221ENST00000553498 FXR2P51116 673 aaKnown RBP eCLIP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms