RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CADPSQ9ULU8 1353 aa21.69■■□□□ 1.06
USP28-214ENST00000545540 BCANQ96GW7 911 aa21.69■■□□□ 1.06
USP28-214ENST00000545540 RAD54L2Q9Y4B4 1467 aa21.67■■□□□ 1.06
USP28-214ENST00000545540 FHOD3Q2V2M9 1422 aa21.66■■□□□ 1.06
USP28-214ENST00000545540 SUPT16HQ9Y5B9 1047 aaKnown RBP21.65■■□□□ 1.06
USP28-214ENST00000545540 ARID3CA6NKF2 412 aa21.63■■□□□ 1.05
USP28-214ENST00000545540 DNAJC5BQ9UF47 199 aa21.6■■□□□ 1.05
USP28-214ENST00000545540 SETD5Q9C0A6 1442 aa21.58■■□□□ 1.04
USP28-214ENST00000545540 NESP48681 1621 aa21.57■■□□□ 1.04
USP28-214ENST00000545540 LRRC9Q6ZRR7 1453 aa21.56■■□□□ 1.04
USP28-214ENST00000545540 MAPKBP1O60336 1514 aa21.55■■□□□ 1.04
USP28-214ENST00000545540 TIAM1Q13009 1591 aa21.53■■□□□ 1.04
USP28-214ENST00000545540 TRIM52Q96A61 297 aa21.53■■□□□ 1.04
USP28-214ENST00000545540 FANCD2Q9BXW9 1451 aa21.51■■□□□ 1.03
USP28-214ENST00000545540 TDRD9Q8NDG6 1382 aaKnown RBP21.5■■□□□ 1.03
USP28-214ENST00000545540 WDR97A6NE52 1622 aa21.5■■□□□ 1.03
USP28-214ENST00000545540 CHIC2Q9UKJ5 165 aa21.49■■□□□ 1.03
USP28-214ENST00000545540 PCF11O94913 1555 aaKnown RBP21.44■■□□□ 1.02
USP28-214ENST00000545540 CC2D2AQ9P2K1 1620 aa21.43■■□□□ 1.02
USP28-214ENST00000545540 FKBP8Q14318 412 aa21.42■■□□□ 1.02
USP28-214ENST00000545540 RRP7BPQ9NSQ0 103 aa21.41■■□□□ 1.02
USP28-214ENST00000545540 FHAD1B1AJZ9 1412 aa21.41■■□□□ 1.02
USP28-214ENST00000545540 PPP1R15AO75807 674 aaPredicted RBP21.39■■□□□ 1.02
USP28-214ENST00000545540 MTUS2Q5JR59 1369 aa21.39■■□□□ 1.01
USP28-214ENST00000545540 POLA1P09884 1462 aaPredicted RBP21.39■■□□□ 1.01
USP28-214ENST00000545540 PTPRKQ15262 1439 aa21.32■■□□□ 1
USP28-214ENST00000545540 FOXD1Q16676 465 aa21.32■■□□□ 1
USP28-214ENST00000545540 TSHZ2Q9NRE2 1034 aa21.32■■□□□ 1
USP28-214ENST00000545540 TOPBP1Q92547 1522 aa21.32■■□□□ 1
USP28-214ENST00000545540 CNGB1Q14028 1251 aaPredicted RBP21.32■■□□□ 1
USP28-214ENST00000545540 TONSLQ96HA7 1378 aa21.32■■□□□ 1
USP28-214ENST00000545540 ANP32CO43423 234 aa21.3■■□□□ 1
USP28-214ENST00000545540 IRX6P78412 446 aaPredicted RBP21.25■□□□□ 0.99
USP28-214ENST00000545540 FGD6Q6ZV73 1430 aa21.25■□□□□ 0.99
USP28-214ENST00000545540 CASKIN1Q8WXD9 1431 aa21.24■□□□□ 0.99
USP28-214ENST00000545540 MAP3K1Q13233 1512 aa21.23■□□□□ 0.99
USP28-214ENST00000545540 ABCA10Q8WWZ4 1543 aa21.22■□□□□ 0.99
USP28-214ENST00000545540 PRDM2Q13029 1718 aa21.22■□□□□ 0.99
USP28-214ENST00000545540 AQRO60306 1485 aaKnown RBP eCLIP21.21■□□□□ 0.994e-6■■■■□ 22.1
USP28-214ENST00000545540 CCDC18Q5T9S5 1454 aa21.2■□□□□ 0.98
USP28-214ENST00000545540 FYCO1Q9BQS8 1478 aa21.19■□□□□ 0.98
USP28-214ENST00000545540 DNMBPQ6XZF7 1577 aa21.19■□□□□ 0.98
USP28-214ENST00000545540 URB2Q14146 1524 aaKnown RBP21.18■□□□□ 0.98
USP28-214ENST00000545540 FMN1Q68DA7 1419 aa21.16■□□□□ 0.98
USP28-214ENST00000545540 SENP3-EIF4A1A0A087X0R7 540 aa21.16■□□□□ 0.98
USP28-214ENST00000545540 CFAP43Q8NDM7 1665 aa21.15■□□□□ 0.98
USP28-214ENST00000545540 NCOA2Q15596 1464 aa21.13■□□□□ 0.97
USP28-214ENST00000545540 HNRNPUQ00839 825 aaKnown RBP eCLIP21.13■□□□□ 0.97
USP28-214ENST00000545540 NEFLP07196 543 aa21.13■□□□□ 0.97
USP28-214ENST00000545540 GAPVD1Q14C86 1478 aa21.12■□□□□ 0.97
USP28-214ENST00000545540 SNAPC4Q5SXM2 1469 aa21.11■□□□□ 0.97
USP28-214ENST00000545540 HSPA5P11021 654 aaKnown RBP21.1■□□□□ 0.97
USP28-214ENST00000545540 NAIPQ13075 1403 aa21.1■□□□□ 0.97
USP28-214ENST00000545540 CCDC184Q52MB2 194 aa21.09■□□□□ 0.97
USP28-214ENST00000545540 TIMELESSQ9UNS1 1208 aa21.09■□□□□ 0.97
USP28-214ENST00000545540 ZNF644Q9H582 1327 aaPredicted RBP21.08■□□□□ 0.96
USP28-214ENST00000545540 POLR3GLQ9BT43 218 aa21.07■□□□□ 0.96
USP28-214ENST00000545540 MYOM3Q5VTT5 1437 aa21.06■□□□□ 0.96
USP28-214ENST00000545540 UACAQ9BZF9 1416 aa21.05■□□□□ 0.96
USP28-214ENST00000545540 HFM1A2PYH4 1435 aa21.05■□□□□ 0.96
USP28-214ENST00000545540 EFCAB5A4FU69 1503 aa21.05■□□□□ 0.96
USP28-214ENST00000545540 WASHC2AQ641Q2 1341 aa21.04■□□□□ 0.96
USP28-214ENST00000545540 C11orf95C9JLR9 678 aaPredicted RBP21.04■□□□□ 0.96
USP28-214ENST00000545540 L3MBTL2Q969R5 705 aa21.04■□□□□ 0.96
USP28-214ENST00000545540 CCER2I3L3R5 266 aa21.02■□□□□ 0.96
USP28-214ENST00000545540 ZNF326Q5BKZ1 582 aaKnown RBP21.02■□□□□ 0.96
USP28-214ENST00000545540 FAM9BQ8IZU0 186 aa21.02■□□□□ 0.96
USP28-214ENST00000545540 MPHOSPH9Q99550 1183 aa21.02■□□□□ 0.96
USP28-214ENST00000545540 MAGI3Q5TCQ9 1506 aa21.01■□□□□ 0.95
USP28-214ENST00000545540 PTPN23Q9H3S7 1636 aa21■□□□□ 0.95
USP28-214ENST00000545540 CTTNBP2Q8WZ74 1663 aa21■□□□□ 0.95
USP28-214ENST00000545540 LRRIQ1Q96JM4 1722 aa20.99■□□□□ 0.95
USP28-214ENST00000545540 ZNF777Q9ULD5 760 aaPredicted RBP20.99■□□□□ 0.95
USP28-214ENST00000545540 CDK13Q14004 1512 aaKnown RBP20.98■□□□□ 0.95
USP28-214ENST00000545540 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.97■□□□□ 0.95
USP28-214ENST00000545540 FBLN2P98095 1184 aa20.97■□□□□ 0.95
USP28-214ENST00000545540 CUL7Q14999 1698 aa20.97■□□□□ 0.95
USP28-214ENST00000545540 GRIN2BQ13224 1484 aa20.97■□□□□ 0.95
USP28-214ENST00000545540 PDS5BQ9NTI5 1447 aa20.94■□□□□ 0.94
USP28-214ENST00000545540 EIF4G2P78344 907 aaKnown RBP eCLIP20.94■□□□□ 0.94
USP28-214ENST00000545540 KDM6BO15054 1643 aa20.93■□□□□ 0.94
USP28-214ENST00000545540 NBPF8Q3BBV2 869 aa20.93■□□□□ 0.94
USP28-214ENST00000545540 RBM19Q9Y4C8 960 aaKnown RBP20.93■□□□□ 0.94
USP28-214ENST00000545540 SLC4A1APQ9BWU0 796 aaKnown RBP20.91■□□□□ 0.94
USP28-214ENST00000545540 MYT1Q01538 1121 aa20.9■□□□□ 0.94
USP28-214ENST00000545540 DENND4BO75064 1496 aaPredicted RBP20.89■□□□□ 0.93
USP28-214ENST00000545540 SAMD9Q5K651 1589 aa20.86■□□□□ 0.93
USP28-214ENST00000545540 MRS2Q9HD23 443 aa20.86■□□□□ 0.93
USP28-214ENST00000545540 ABCA5Q8WWZ7 1642 aa20.85■□□□□ 0.93
USP28-214ENST00000545540 SUPT6HQ7KZ85 1726 aaKnown RBP20.85■□□□□ 0.93
USP28-214ENST00000545540 LAMC3Q9Y6N6 1575 aa20.85■□□□□ 0.93
USP28-214ENST00000545540 KDM5BQ9UGL1 1544 aa20.85■□□□□ 0.93
USP28-214ENST00000545540 EPRSP07814 1512 aaKnown RBP20.83■□□□□ 0.93
USP28-214ENST00000545540 UGGT2Q9NYU1 1516 aa20.83■□□□□ 0.93
USP28-214ENST00000545540 KIF21AQ7Z4S6 1674 aa20.83■□□□□ 0.93
USP28-214ENST00000545540 ANP32EQ9BTT0 268 aa20.83■□□□□ 0.92
USP28-214ENST00000545540 EHBP1L1Q8N3D4 1523 aa20.82■□□□□ 0.92
USP28-214ENST00000545540 ZNF608Q9ULD9 1512 aaPredicted RBP20.81■□□□□ 0.92
USP28-214ENST00000545540 THOC2Q8NI27 1593 aaKnown RBP20.81■□□□□ 0.92
USP28-214ENST00000545540 PRKRIP1Q9H875 184 aaPredicted RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms