RNA–Protein interactions for RNA: ENST00000541864.6

SLC12A4-204, Transcript of solute carrier family 12 member 4, humanhuman

TSL 2 BASIC

Gene SLC12A4, Length 3,627 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC12A4-204ENST00000541864 HIRIP3Q9BW71 556 aaPredicted RBP16.74■□□□□ 0.27
SLC12A4-204ENST00000541864 NESP48681 1621 aa16.73■□□□□ 0.27
SLC12A4-204ENST00000541864 DNAJC5BQ9UF47 199 aa16.69■□□□□ 0.26
SLC12A4-204ENST00000541864 RRBP1Q9P2E9 1410 aaKnown RBP16.66■□□□□ 0.26
SLC12A4-204ENST00000541864 FHOD3Q2V2M9 1422 aa16.65■□□□□ 0.26
SLC12A4-204ENST00000541864 CLSPNQ9HAW4 1339 aa16.65■□□□□ 0.26
SLC12A4-204ENST00000541864 TDRD9Q8NDG6 1382 aaKnown RBP16.64■□□□□ 0.25
SLC12A4-204ENST00000541864 BCANQ96GW7 911 aa16.64■□□□□ 0.25
SLC12A4-204ENST00000541864 RAB3GAP2Q9H2M9 1393 aa16.62■□□□□ 0.25
SLC12A4-204ENST00000541864 POLR3GLQ9BT43 218 aa16.62■□□□□ 0.25
SLC12A4-204ENST00000541864 PRKCSHP14314 528 aaPredicted RBP16.61■□□□□ 0.25
SLC12A4-204ENST00000541864 FHAD1B1AJZ9 1412 aa16.61■□□□□ 0.25
SLC12A4-204ENST00000541864 PRDM2Q13029 1718 aa16.6■□□□□ 0.25
SLC12A4-204ENST00000541864 POLA1P09884 1462 aaPredicted RBP16.6■□□□□ 0.25
SLC12A4-204ENST00000541864 TOPBP1Q92547 1522 aa16.6■□□□□ 0.25
SLC12A4-204ENST00000541864 PHLDB1Q86UU1 1377 aa16.59■□□□□ 0.25
SLC12A4-204ENST00000541864 SIN3AQ96ST3 1273 aa16.58■□□□□ 0.25
SLC12A4-204ENST00000541864 TRIM52Q96A61 297 aa16.57■□□□□ 0.24
SLC12A4-204ENST00000541864 LRRC9Q6ZRR7 1453 aa16.56■□□□□ 0.24
SLC12A4-204ENST00000541864 TIAM1Q13009 1591 aa16.56■□□□□ 0.24
SLC12A4-204ENST00000541864 DDX10Q13206 875 aaKnown RBP16.56■□□□□ 0.24
SLC12A4-204ENST00000541864 FBLN2P98095 1184 aa16.55■□□□□ 0.24
SLC12A4-204ENST00000541864 ERICH6Q7L0X2 663 aa16.55■□□□□ 0.24
SLC12A4-204ENST00000541864 DNMBPQ6XZF7 1577 aa16.55■□□□□ 0.24
SLC12A4-204ENST00000541864 CHIC2Q9UKJ5 165 aa16.54■□□□□ 0.24
SLC12A4-204ENST00000541864 SETD5Q9C0A6 1442 aa16.53■□□□□ 0.24
SLC12A4-204ENST00000541864 MTUS2Q5JR59 1369 aa16.52■□□□□ 0.24
SLC12A4-204ENST00000541864 ABCA10Q8WWZ4 1543 aa16.51■□□□□ 0.23
SLC12A4-204ENST00000541864 PCF11O94913 1555 aaKnown RBP16.48■□□□□ 0.23
SLC12A4-204ENST00000541864 PDS5BQ9NTI5 1447 aa16.47■□□□□ 0.23
SLC12A4-204ENST00000541864 URB2Q14146 1524 aaKnown RBP16.46■□□□□ 0.23
SLC12A4-204ENST00000541864 GAPVD1Q14C86 1478 aa16.44■□□□□ 0.22
SLC12A4-204ENST00000541864 ZNF326Q5BKZ1 582 aaKnown RBP16.43■□□□□ 0.22
SLC12A4-204ENST00000541864 FMN1Q68DA7 1419 aa16.43■□□□□ 0.22
SLC12A4-204ENST00000541864 MAP3K1Q13233 1512 aa16.42■□□□□ 0.22
SLC12A4-204ENST00000541864 CASKIN1Q8WXD9 1431 aa16.41■□□□□ 0.22
SLC12A4-204ENST00000541864 NEFLP07196 543 aa16.41■□□□□ 0.22
SLC12A4-204ENST00000541864 FYCO1Q9BQS8 1478 aa16.39■□□□□ 0.21
SLC12A4-204ENST00000541864 RRP7BPQ9NSQ0 103 aa16.39■□□□□ 0.21
SLC12A4-204ENST00000541864 LAMC3Q9Y6N6 1575 aa16.38■□□□□ 0.21
SLC12A4-204ENST00000541864 ZNF777Q9ULD5 760 aaPredicted RBP16.37■□□□□ 0.21
SLC12A4-204ENST00000541864 EFCAB5A4FU69 1503 aa16.36■□□□□ 0.21
SLC12A4-204ENST00000541864 CUL7Q14999 1698 aa16.36■□□□□ 0.21
SLC12A4-204ENST00000541864 KCNH8Q96L42 1107 aa16.35■□□□□ 0.21
SLC12A4-204ENST00000541864 MAPKBP1O60336 1514 aa16.35■□□□□ 0.21
SLC12A4-204ENST00000541864 TONSLQ96HA7 1378 aa16.34■□□□□ 0.21
SLC12A4-204ENST00000541864 FGD6Q6ZV73 1430 aa16.34■□□□□ 0.21
SLC12A4-204ENST00000541864 AQRO60306 1485 aaKnown RBP eCLIP16.34■□□□□ 0.212e-7■■■■■ 35
SLC12A4-204ENST00000541864 SENP3-EIF4A1A0A087X0R7 540 aa16.33■□□□□ 0.21
SLC12A4-204ENST00000541864 CFAP43Q8NDM7 1665 aa16.31■□□□□ 0.2
SLC12A4-204ENST00000541864 ANP32CO43423 234 aa16.31■□□□□ 0.2
SLC12A4-204ENST00000541864 CTTNBP2Q8WZ74 1663 aa16.3■□□□□ 0.2
SLC12A4-204ENST00000541864 PPP1R15AO75807 674 aaPredicted RBP16.29■□□□□ 0.2
SLC12A4-204ENST00000541864 WDR97A6NE52 1622 aa16.28■□□□□ 0.2
SLC12A4-204ENST00000541864 NCOA2Q15596 1464 aa16.27■□□□□ 0.19
SLC12A4-204ENST00000541864 BCL11AQ9H165 835 aa16.26■□□□□ 0.19
SLC12A4-204ENST00000541864 FKBP8Q14318 412 aa16.25■□□□□ 0.19
SLC12A4-204ENST00000541864 CCDC18Q5T9S5 1454 aa16.25■□□□□ 0.19
SLC12A4-204ENST00000541864 KIF21AQ7Z4S6 1674 aa16.25■□□□□ 0.19
SLC12A4-204ENST00000541864 SNAPC4Q5SXM2 1469 aa16.25■□□□□ 0.19
SLC12A4-204ENST00000541864 MYOM3Q5VTT5 1437 aa16.24■□□□□ 0.19
SLC12A4-204ENST00000541864 PTPRKQ15262 1439 aa16.23■□□□□ 0.19
SLC12A4-204ENST00000541864 TIMELESSQ9UNS1 1208 aa16.23■□□□□ 0.19
SLC12A4-204ENST00000541864 ABCA5Q8WWZ7 1642 aa16.22■□□□□ 0.19
SLC12A4-204ENST00000541864 IRX6P78412 446 aaPredicted RBP16.22■□□□□ 0.19
SLC12A4-204ENST00000541864 FOXD1Q16676 465 aa16.21■□□□□ 0.19
SLC12A4-204ENST00000541864 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.2■□□□□ 0.18
SLC12A4-204ENST00000541864 GRIN2BQ13224 1484 aa16.18■□□□□ 0.18
SLC12A4-204ENST00000541864 CHMP7Q8WUX9 453 aaPredicted RBP16.17■□□□□ 0.18
SLC12A4-204ENST00000541864 MYT1LQ9UL68 1186 aa16.17■□□□□ 0.18
SLC12A4-204ENST00000541864 SUPT16HQ9Y5B9 1047 aaKnown RBP16.16■□□□□ 0.18
SLC12A4-204ENST00000541864 HFM1A2PYH4 1435 aa16.16■□□□□ 0.18
SLC12A4-204ENST00000541864 UACAQ9BZF9 1416 aa16.15■□□□□ 0.18
SLC12A4-204ENST00000541864 HNRNPUQ00839 825 aaKnown RBP eCLIP16.15■□□□□ 0.18
SLC12A4-204ENST00000541864 NAIPQ13075 1403 aa16.15■□□□□ 0.18
SLC12A4-204ENST00000541864 SAMD9Q5K651 1589 aa16.14■□□□□ 0.17
SLC12A4-204ENST00000541864 CDK13Q14004 1512 aaKnown RBP16.14■□□□□ 0.17
SLC12A4-204ENST00000541864 MRC2Q9UBG0 1479 aa16.14■□□□□ 0.17
SLC12A4-204ENST00000541864 ZNF608Q9ULD9 1512 aaPredicted RBP16.14■□□□□ 0.17
SLC12A4-204ENST00000541864 FAM9BQ8IZU0 186 aa16.14■□□□□ 0.17
SLC12A4-204ENST00000541864 SUPT6HQ7KZ85 1726 aaKnown RBP16.13■□□□□ 0.17
SLC12A4-204ENST00000541864 CDK11AQ9UQ88 783 aaPredicted RBP16.13■□□□□ 0.17
SLC12A4-204ENST00000541864 EHBP1L1Q8N3D4 1523 aa16.13■□□□□ 0.17
SLC12A4-204ENST00000541864 TARBP1Q13395 1621 aaKnown RBP16.12■□□□□ 0.17
SLC12A4-204ENST00000541864 ZNF644Q9H582 1327 aaPredicted RBP16.12■□□□□ 0.17
SLC12A4-204ENST00000541864 IQGAP2Q13576 1575 aa16.11■□□□□ 0.17
SLC12A4-204ENST00000541864 ERCC6Q03468 1493 aa16.11■□□□□ 0.17
SLC12A4-204ENST00000541864 MPHOSPH9Q99550 1183 aa16.1■□□□□ 0.17
SLC12A4-204ENST00000541864 EPRSP07814 1512 aaKnown RBP16.1■□□□□ 0.17
SLC12A4-204ENST00000541864 PTPN23Q9H3S7 1636 aa16.1■□□□□ 0.17
SLC12A4-204ENST00000541864 MAGI3Q5TCQ9 1506 aa16.09■□□□□ 0.17
SLC12A4-204ENST00000541864 LRRIQ1Q96JM4 1722 aa16.07■□□□□ 0.16
SLC12A4-204ENST00000541864 SLC4A1APQ9BWU0 796 aaKnown RBP16.07■□□□□ 0.16
SLC12A4-204ENST00000541864 KDM2AQ9Y2K7 1162 aa16.07■□□□□ 0.16
SLC12A4-204ENST00000541864 UGGT2Q9NYU1 1516 aa16.06■□□□□ 0.16
SLC12A4-204ENST00000541864 HECW1Q76N89 1606 aa16.06■□□□□ 0.16
SLC12A4-204ENST00000541864 HSPA5P11021 654 aaKnown RBP16.06■□□□□ 0.16
SLC12A4-204ENST00000541864 CFDP1Q9UEE9 299 aaPredicted RBP16.06■□□□□ 0.16
SLC12A4-204ENST00000541864 PBRM1Q86U86 1689 aa16.05■□□□□ 0.16
SLC12A4-204ENST00000541864 SALL2Q9Y467 1007 aaPredicted RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms