RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 CLSPNQ9HAW4 1339 aa13.99□□□□□ -0.17
CTNNA1-243ENST00000540387 TARBP1Q13395 1621 aaKnown RBP13.95□□□□□ -0.18
CTNNA1-243ENST00000540387 IGF1RP08069 1367 aa13.94□□□□□ -0.18
CTNNA1-243ENST00000540387 IFT140Q96RY7 1462 aa13.94□□□□□ -0.18
CTNNA1-243ENST00000540387 AQRO60306 1485 aaKnown RBP eCLIP13.93□□□□□ -0.181e-7■■■■□ 24.9
CTNNA1-243ENST00000540387 ZNF608Q9ULD9 1512 aaPredicted RBP13.92□□□□□ -0.18
CTNNA1-243ENST00000540387 GAPVD1Q14C86 1478 aa13.9□□□□□ -0.18
CTNNA1-243ENST00000540387 WDR97A6NE52 1622 aa13.88□□□□□ -0.19
CTNNA1-243ENST00000540387 UBTFP17480 764 aaKnown RBP13.87□□□□□ -0.19
CTNNA1-243ENST00000540387 CARMIL1Q5VZK9 1371 aa13.86□□□□□ -0.19
CTNNA1-243ENST00000540387 PRXQ9BXM0 1461 aa13.86□□□□□ -0.19
CTNNA1-243ENST00000540387 RAPGEF2Q9Y4G8 1499 aa13.85□□□□□ -0.19
CTNNA1-243ENST00000540387 ABCA5Q8WWZ7 1642 aa13.85□□□□□ -0.19
CTNNA1-243ENST00000540387 GOLGA3Q08378 1498 aa13.82□□□□□ -0.2
CTNNA1-243ENST00000540387 GRIN2BQ13224 1484 aa13.81□□□□□ -0.2
CTNNA1-243ENST00000540387 ANO8Q9HCE9 1232 aaPredicted RBP13.81□□□□□ -0.2
CTNNA1-243ENST00000540387 ERICH3Q5RHP9 1530 aa13.8□□□□□ -0.2
CTNNA1-243ENST00000540387 KIF21BO75037 1637 aa13.8□□□□□ -0.2
CTNNA1-243ENST00000540387 EIF4G3O43432 1585 aaKnown RBP13.79□□□□□ -0.2
CTNNA1-243ENST00000540387 TNIKQ9UKE5 1360 aa13.77□□□□□ -0.21
CTNNA1-243ENST00000540387 RANGAP1P46060 587 aaPredicted RBP13.75□□□□□ -0.21
CTNNA1-243ENST00000540387 SNAPC4Q5SXM2 1469 aa13.75□□□□□ -0.21
CTNNA1-243ENST00000540387 FHAD1B1AJZ9 1412 aa13.74□□□□□ -0.21
CTNNA1-243ENST00000540387 RBM19Q9Y4C8 960 aaKnown RBP13.74□□□□□ -0.21
CTNNA1-243ENST00000540387 PBRM1Q86U86 1689 aa13.74□□□□□ -0.21
CTNNA1-243ENST00000540387 FBLN2P98095 1184 aa13.73□□□□□ -0.21
CTNNA1-243ENST00000540387 CUL7Q14999 1698 aa13.73□□□□□ -0.21
CTNNA1-243ENST00000540387 CHMP7Q8WUX9 453 aaPredicted RBP13.72□□□□□ -0.21
CTNNA1-243ENST00000540387 MAGI1Q96QZ7 1491 aaPredicted RBP13.69□□□□□ -0.22
CTNNA1-243ENST00000540387 ADAMTS12P58397 1594 aa13.69□□□□□ -0.22
CTNNA1-243ENST00000540387 MSH5O43196 834 aa13.69□□□□□ -0.22
CTNNA1-243ENST00000540387 CEP162Q5TB80 1403 aa13.68□□□□□ -0.22
CTNNA1-243ENST00000540387 SYNJ2O15056 1496 aa13.66□□□□□ -0.22
CTNNA1-243ENST00000540387 GRIN2AQ12879 1464 aa13.64□□□□□ -0.23
CTNNA1-243ENST00000540387 BCANQ96GW7 911 aa13.64□□□□□ -0.23
CTNNA1-243ENST00000540387 CLIP1P30622 1438 aa13.63□□□□□ -0.23
CTNNA1-243ENST00000540387 SALL2Q9Y467 1007 aaPredicted RBP13.6□□□□□ -0.23
CTNNA1-243ENST00000540387 DEKP35659 375 aaKnown RBP13.59□□□□□ -0.23
CTNNA1-243ENST00000540387 MYT1LQ9UL68 1186 aa13.59□□□□□ -0.23
CTNNA1-243ENST00000540387 UBE2Q2Q8WVN8 375 aa13.59□□□□□ -0.23
CTNNA1-243ENST00000540387 P3H3Q8IVL6 736 aa13.58□□□□□ -0.23
CTNNA1-243ENST00000540387 KIAA0586Q9BVV6 1533 aa13.55□□□□□ -0.24
CTNNA1-243ENST00000540387 NUP160Q12769 1436 aa13.55□□□□□ -0.24
CTNNA1-243ENST00000540387 ARHGAP35Q9NRY4 1499 aa13.54□□□□□ -0.24
CTNNA1-243ENST00000540387 CEP170Q5SW79 1584 aa13.54□□□□□ -0.24
CTNNA1-243ENST00000540387 FKBP8Q14318 412 aa13.53□□□□□ -0.24
CTNNA1-243ENST00000540387 JPH4Q96JJ6 628 aa13.52□□□□□ -0.24
CTNNA1-243ENST00000540387 CCDC136Q96JN2 1154 aa13.52□□□□□ -0.24
CTNNA1-243ENST00000540387 DAXXQ9UER7 740 aaPredicted RBP13.52□□□□□ -0.24
CTNNA1-243ENST00000540387 CTTNBP2Q8WZ74 1663 aa13.52□□□□□ -0.24
CTNNA1-243ENST00000540387 ARAP1Q96P48 1450 aa13.51□□□□□ -0.25
CTNNA1-243ENST00000540387 ERICH6BQ5W0A0 696 aa13.51□□□□□ -0.25
CTNNA1-243ENST00000540387 IQGAP2Q13576 1575 aa13.51□□□□□ -0.25
CTNNA1-243ENST00000540387 FANCIQ9NVI1 1328 aa13.51□□□□□ -0.25
CTNNA1-243ENST00000540387 CHD1O14646 1710 aa13.51□□□□□ -0.25
CTNNA1-243ENST00000540387 FHOD3Q2V2M9 1422 aa13.48□□□□□ -0.25
CTNNA1-243ENST00000540387 VPS8Q8N3P4 1428 aa13.46□□□□□ -0.25
CTNNA1-243ENST00000540387 OSCARQ8IYS5 282 aa13.46□□□□□ -0.26
CTNNA1-243ENST00000540387 UGGT2Q9NYU1 1516 aa13.45□□□□□ -0.26
CTNNA1-243ENST00000540387 EFCAB5A4FU69 1503 aa13.44□□□□□ -0.26
CTNNA1-243ENST00000540387 ITGAEP38570 1179 aa13.43□□□□□ -0.26
CTNNA1-243ENST00000540387 DISP1Q96F81 1524 aa13.43□□□□□ -0.26
CTNNA1-243ENST00000540387 SAMD9Q5K651 1589 aa13.42□□□□□ -0.26
CTNNA1-243ENST00000540387 ATP1B4Q9UN42 357 aaPredicted RBP13.41□□□□□ -0.26
CTNNA1-243ENST00000540387 PRG4Q92954 1404 aaPredicted RBP13.4□□□□□ -0.26
CTNNA1-243ENST00000540387 CARMIL2Q6F5E8 1435 aa13.39□□□□□ -0.27
CTNNA1-243ENST00000540387 CLASP1Q7Z460 1538 aa13.38□□□□□ -0.27
CTNNA1-243ENST00000540387 NEFLP07196 543 aa13.37□□□□□ -0.27
CTNNA1-243ENST00000540387 KIAA0556O60303 1618 aa13.37□□□□□ -0.27
CTNNA1-243ENST00000540387 FMN1Q68DA7 1419 aa13.37□□□□□ -0.27
CTNNA1-243ENST00000540387 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.36□□□□□ -0.27
CTNNA1-243ENST00000540387 KCNH8Q96L42 1107 aa13.35□□□□□ -0.27
CTNNA1-243ENST00000540387 ERCC6L2Q5T890 1561 aa13.33□□□□□ -0.28
CTNNA1-243ENST00000540387 SHROOM2Q13796 1616 aa13.33□□□□□ -0.28
CTNNA1-243ENST00000540387 EIF5BO60841 1220 aaKnown RBP13.33□□□□□ -0.28
CTNNA1-243ENST00000540387 CASKIN1Q8WXD9 1431 aa13.32□□□□□ -0.28
CTNNA1-243ENST00000540387 ARID3CA6NKF2 412 aa13.32□□□□□ -0.28
CTNNA1-243ENST00000540387 KANK4Q5T7N3 995 aaPredicted RBP13.32□□□□□ -0.28
CTNNA1-243ENST00000540387 PTPRGP23470 1445 aa13.31□□□□□ -0.28
CTNNA1-243ENST00000540387 IL27Q8NEV9 243 aa13.31□□□□□ -0.28
CTNNA1-243ENST00000540387 PCF11O94913 1555 aaKnown RBP13.3□□□□□ -0.28
CTNNA1-243ENST00000540387 PLB1Q6P1J6 1458 aa13.28□□□□□ -0.28
CTNNA1-243ENST00000540387 FYCO1Q9BQS8 1478 aa13.28□□□□□ -0.28
CTNNA1-243ENST00000540387 RTN4Q9NQC3 1192 aaKnown RBP13.27□□□□□ -0.28
CTNNA1-243ENST00000540387 NBR1Q14596 966 aa13.27□□□□□ -0.29
CTNNA1-243ENST00000540387 CDK11AQ9UQ88 783 aaPredicted RBP13.27□□□□□ -0.29
CTNNA1-243ENST00000540387 HNRNPUL2Q1KMD3 747 aaKnown RBP13.26□□□□□ -0.29
CTNNA1-243ENST00000540387 PKNOX2Q96KN3 472 aa13.25□□□□□ -0.29
CTNNA1-243ENST00000540387 NUP153P49790 1475 aaKnown RBP13.23□□□□□ -0.29
CTNNA1-243ENST00000540387 TIAM1Q13009 1591 aa13.22□□□□□ -0.29
CTNNA1-243ENST00000540387 EPRSP07814 1512 aaKnown RBP13.21□□□□□ -0.29
CTNNA1-243ENST00000540387 UACAQ9BZF9 1416 aa13.21□□□□□ -0.29
CTNNA1-243ENST00000540387 RAPGEF6Q8TEU7 1601 aa13.21□□□□□ -0.29
CTNNA1-243ENST00000540387 MAP3K1Q13233 1512 aa13.21□□□□□ -0.3
CTNNA1-243ENST00000540387 ABCA8O94911 1581 aa13.2□□□□□ -0.3
CTNNA1-243ENST00000540387 CDK13Q14004 1512 aaKnown RBP13.2□□□□□ -0.3
CTNNA1-243ENST00000540387 HECW1Q76N89 1606 aa13.19□□□□□ -0.3
CTNNA1-243ENST00000540387 NOP58Q9Y2X3 529 aaKnown RBP13.19□□□□□ -0.3
CTNNA1-243ENST00000540387 LRRC9Q6ZRR7 1453 aa13.19□□□□□ -0.3
CTNNA1-243ENST00000540387 LRRIQ1Q96JM4 1722 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms