RNA–Protein interactions for RNA: ENST00000539847.1

CCDC60-204, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CCDC60, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-204ENST00000539847 WDR97A6NE52 1622 aa12.68□□□□□ -0.38
CCDC60-204ENST00000539847 ARAP1Q96P48 1450 aa12.65□□□□□ -0.38
CCDC60-204ENST00000539847 SAMD1Q6SPF0 538 aaPredicted RBP12.64□□□□□ -0.39
CCDC60-204ENST00000539847 SOGA1O94964 1423 aa12.62□□□□□ -0.39
CCDC60-204ENST00000539847 CHD1O14646 1710 aa12.62□□□□□ -0.39
CCDC60-204ENST00000539847 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.62□□□□□ -0.39
CCDC60-204ENST00000539847 HNRNPUL2Q1KMD3 747 aaKnown RBP12.62□□□□□ -0.39
CCDC60-204ENST00000539847 MAGI1Q96QZ7 1491 aaPredicted RBP12.61□□□□□ -0.39
CCDC60-204ENST00000539847 FBLN2P98095 1184 aa12.61□□□□□ -0.39
CCDC60-204ENST00000539847 TDRD9Q8NDG6 1382 aaKnown RBP12.59□□□□□ -0.39
CCDC60-204ENST00000539847 HRCP23327 699 aa12.59□□□□□ -0.39
CCDC60-204ENST00000539847 RAD54L2Q9Y4B4 1467 aa12.59□□□□□ -0.39
CCDC60-204ENST00000539847 TRHP20396 242 aaPredicted RBP12.58□□□□□ -0.4
CCDC60-204ENST00000539847 CLASP1Q7Z460 1538 aa12.57□□□□□ -0.4
CCDC60-204ENST00000539847 GRIN2BQ13224 1484 aa12.57□□□□□ -0.4
CCDC60-204ENST00000539847 SNAPC4Q5SXM2 1469 aa12.57□□□□□ -0.4
CCDC60-204ENST00000539847 SYNJ1O43426 1573 aa12.56□□□□□ -0.4
CCDC60-204ENST00000539847 CHMP7Q8WUX9 453 aaPredicted RBP12.56□□□□□ -0.4
CCDC60-204ENST00000539847 FGD5Q6ZNL6 1462 aa12.56□□□□□ -0.4
CCDC60-204ENST00000539847 SYNJ2O15056 1496 aa12.55□□□□□ -0.4
CCDC60-204ENST00000539847 CUX1P39880 1505 aa12.52□□□□□ -0.4
CCDC60-204ENST00000539847 GAPVD1Q14C86 1478 aa12.48□□□□□ -0.41
CCDC60-204ENST00000539847 ABCA10Q8WWZ4 1543 aa12.47□□□□□ -0.41
CCDC60-204ENST00000539847 ZNF219Q9P2Y4 722 aaPredicted RBP12.46□□□□□ -0.41
CCDC60-204ENST00000539847 ABCA5Q8WWZ7 1642 aa12.41□□□□□ -0.42
CCDC60-204ENST00000539847 PBRM1Q86U86 1689 aa12.39□□□□□ -0.43
CCDC60-204ENST00000539847 NUP160Q12769 1436 aa12.39□□□□□ -0.43
CCDC60-204ENST00000539847 WRNQ14191 1432 aaPredicted RBP eCLIP12.39□□□□□ -0.43
CCDC60-204ENST00000539847 GRIN2AQ12879 1464 aa12.39□□□□□ -0.43
CCDC60-204ENST00000539847 SUPT5HO00267 1087 aaKnown RBP12.38□□□□□ -0.43
CCDC60-204ENST00000539847 FHAD1B1AJZ9 1412 aa12.35□□□□□ -0.43
CCDC60-204ENST00000539847 APLP2Q06481 763 aa12.33□□□□□ -0.44
CCDC60-204ENST00000539847 ADAMTS12P58397 1594 aa12.33□□□□□ -0.44
CCDC60-204ENST00000539847 ERICH3Q5RHP9 1530 aa12.32□□□□□ -0.44
CCDC60-204ENST00000539847 CEP170Q5SW79 1584 aa12.31□□□□□ -0.44
CCDC60-204ENST00000539847 SHROOM2Q13796 1616 aa12.31□□□□□ -0.44
CCDC60-204ENST00000539847 TOP2BQ02880 1626 aa12.29□□□□□ -0.44
CCDC60-204ENST00000539847 BIVM-ERCC5R4GMW8 1640 aa12.28□□□□□ -0.44
CCDC60-204ENST00000539847 ERCC6L2Q5T890 1561 aa12.27□□□□□ -0.44
CCDC60-204ENST00000539847 MKRN4PQ13434 485 aaPredicted RBP12.25□□□□□ -0.45
CCDC60-204ENST00000539847 PRG4Q92954 1404 aaPredicted RBP12.23□□□□□ -0.45
CCDC60-204ENST00000539847 PELP1Q8IZL8 1130 aaKnown RBP12.23□□□□□ -0.45
CCDC60-204ENST00000539847 JPH4Q96JJ6 628 aa12.23□□□□□ -0.45
CCDC60-204ENST00000539847 SPINK5Q9NQ38 1064 aaPredicted RBP12.23□□□□□ -0.45
CCDC60-204ENST00000539847 SPDYE4A6NLX3 237 aa12.2□□□□□ -0.46
CCDC60-204ENST00000539847 MAPKBP1O60336 1514 aa12.19□□□□□ -0.46
CCDC60-204ENST00000539847 ABCC10Q5T3U5 1492 aa12.19□□□□□ -0.46
CCDC60-204ENST00000539847 PCGF6Q9BYE7 350 aa12.18□□□□□ -0.46
CCDC60-204ENST00000539847 NPM1P06748 294 aaKnown RBP eCLIP12.16□□□□□ -0.46
CCDC60-204ENST00000539847 RUSC2Q8N2Y8 1516 aa12.16□□□□□ -0.46
CCDC60-204ENST00000539847 KIF13AQ9H1H9 1805 aa12.16□□□□□ -0.46
CCDC60-204ENST00000539847 ZEB1P37275 1124 aaPredicted RBP12.14□□□□□ -0.47
CCDC60-204ENST00000539847 KIAA0586Q9BVV6 1533 aa12.14□□□□□ -0.47
CCDC60-204ENST00000539847 FAM69CQ0P6D2 419 aa12.13□□□□□ -0.47
CCDC60-204ENST00000539847 POLA2Q14181 598 aa12.13□□□□□ -0.47
CCDC60-204ENST00000539847 RNF39Q9H2S5 420 aa12.13□□□□□ -0.47
CCDC60-204ENST00000539847 DIP2BQ9P265 1576 aa12.1□□□□□ -0.47
CCDC60-204ENST00000539847 IGF1RP08069 1367 aa12.1□□□□□ -0.47
CCDC60-204ENST00000539847 CAPN15O75808 1086 aa12.1□□□□□ -0.47
CCDC60-204ENST00000539847 TRIM26Q12899 539 aaPredicted RBP12.1□□□□□ -0.47
CCDC60-204ENST00000539847 KIF27Q86VH2 1401 aa12.1□□□□□ -0.47
CCDC60-204ENST00000539847 ADCY10Q96PN6 1610 aa12.08□□□□□ -0.48
CCDC60-204ENST00000539847 FBXO3Q9UK99 471 aa12.07□□□□□ -0.48
CCDC60-204ENST00000539847 CUL7Q14999 1698 aa12.06□□□□□ -0.48
CCDC60-204ENST00000539847 PROM2Q8N271 834 aa12.05□□□□□ -0.48
CCDC60-204ENST00000539847 PTPRGP23470 1445 aa12.04□□□□□ -0.48
CCDC60-204ENST00000539847 CARMIL2Q6F5E8 1435 aa12.03□□□□□ -0.48
CCDC60-204ENST00000539847 KDM6BO15054 1643 aa12.02□□□□□ -0.49
CCDC60-204ENST00000539847 TNIKQ9UKE5 1360 aa12.02□□□□□ -0.49
CCDC60-204ENST00000539847 PLB1Q6P1J6 1458 aa12.02□□□□□ -0.49
CCDC60-204ENST00000539847 ABCC2Q92887 1545 aa12.01□□□□□ -0.49
CCDC60-204ENST00000539847 CARMIL1Q5VZK9 1371 aa12.01□□□□□ -0.49
CCDC60-204ENST00000539847 UHRF1BP1LA0JNW5 1464 aa12.01□□□□□ -0.49
CCDC60-204ENST00000539847 KDM4FA0A1W2PPD8 638 aa12□□□□□ -0.49
CCDC60-204ENST00000539847 PLCB2Q00722 1185 aa11.99□□□□□ -0.49
CCDC60-204ENST00000539847 GLI2P10070 1586 aa11.99□□□□□ -0.49
CCDC60-204ENST00000539847 C1QBPQ07021 282 aaKnown RBP11.97□□□□□ -0.49
CCDC60-204ENST00000539847 PPARGC1BQ86YN6 1023 aaKnown RBP11.97□□□□□ -0.49
CCDC60-204ENST00000539847 ASXL2Q76L83 1435 aa11.96□□□□□ -0.49
CCDC60-204ENST00000539847 ABCB7O75027 752 aa11.96□□□□□ -0.49
CCDC60-204ENST00000539847 VASPP50552 380 aaPredicted RBP11.96□□□□□ -0.49
CCDC60-204ENST00000539847 UACAQ9BZF9 1416 aa11.95□□□□□ -0.5
CCDC60-204ENST00000539847 IQGAP2Q13576 1575 aa11.95□□□□□ -0.5
CCDC60-204ENST00000539847 KDM5BQ9UGL1 1544 aa11.93□□□□□ -0.5
CCDC60-204ENST00000539847 DISP1Q96F81 1524 aa11.91□□□□□ -0.5
CCDC60-204ENST00000539847 TEX14Q8IWB6 1497 aa11.91□□□□□ -0.5
CCDC60-204ENST00000539847 UGGT2Q9NYU1 1516 aa11.91□□□□□ -0.5
CCDC60-204ENST00000539847 EPRSP07814 1512 aaKnown RBP11.9□□□□□ -0.5
CCDC60-204ENST00000539847 TSPOAP1O95153 1857 aa11.89□□□□□ -0.51
CCDC60-204ENST00000539847 IFNLR1Q8IU57 520 aaPredicted RBP11.89□□□□□ -0.51
CCDC60-204ENST00000539847 PPRC1Q5VV67 1664 aaKnown RBP11.88□□□□□ -0.51
CCDC60-204ENST00000539847 RAPGEF2Q9Y4G8 1499 aa11.88□□□□□ -0.51
CCDC60-204ENST00000539847 LOC105371045A0A1W2PR82 267 aa11.87□□□□□ -0.51
CCDC60-204ENST00000539847 MAP3K4Q9Y6R4 1608 aa11.86□□□□□ -0.51
CCDC60-204ENST00000539847 ADGRL1O94910 1474 aa11.85□□□□□ -0.51
CCDC60-204ENST00000539847 COL17A1Q9UMD9 1497 aaPredicted RBP11.85□□□□□ -0.51
CCDC60-204ENST00000539847 ZBTB12Q9Y330 459 aaPredicted RBP11.85□□□□□ -0.51
CCDC60-204ENST00000539847 MYT1Q01538 1121 aa11.84□□□□□ -0.51
CCDC60-204ENST00000539847 WDR7Q9Y4E6 1490 aa11.83□□□□□ -0.52
CCDC60-204ENST00000539847 TTBK1Q5TCY1 1321 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms