RNA–Protein interactions for RNA: ENST00000539847.1

CCDC60-204, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CCDC60, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-204ENST00000539847 CHIC1Q5VXU3 224 aa20.01■□□□□ 0.79
CCDC60-204ENST00000539847 AEBP2Q6ZN18 517 aaPredicted RBP20■□□□□ 0.79
CCDC60-204ENST00000539847 PHF23Q9BUL5 403 aaPredicted RBP17.75■□□□□ 0.43
CCDC60-204ENST00000539847 NISCHQ9Y2I1 1504 aa17.34■□□□□ 0.37
CCDC60-204ENST00000539847 SENP3Q9H4L4 574 aaPredicted RBP16.76■□□□□ 0.27
CCDC60-204ENST00000539847 PLPPR3Q6T4P5 718 aa16.47■□□□□ 0.23
CCDC60-204ENST00000539847 ABCC9O60706 1549 aa15.71■□□□□ 0.11
CCDC60-204ENST00000539847 CCDC180Q9P1Z9 1646 aa15.64■□□□□ 0.09
CCDC60-204ENST00000539847 FOXD1Q16676 465 aa15.57■□□□□ 0.08
CCDC60-204ENST00000539847 ADRA2BP18089 450 aa15.55■□□□□ 0.08
CCDC60-204ENST00000539847 PPP6R1Q9UPN7 881 aa15.49■□□□□ 0.07
CCDC60-204ENST00000539847 KCNA4P22459 653 aa14.99□□□□□ -0.01
CCDC60-204ENST00000539847 RB1CC1Q8TDY2 1594 aa14.97□□□□□ -0.01
CCDC60-204ENST00000539847 DNAJC5BQ9UF47 199 aa14.89□□□□□ -0.03
CCDC60-204ENST00000539847 NACADO15069 1562 aa14.87□□□□□ -0.03
CCDC60-204ENST00000539847 PIAS4Q8N2W9 510 aaPredicted RBP14.79□□□□□ -0.04
CCDC60-204ENST00000539847 MYO15BQ96JP2 1530 aa14.7□□□□□ -0.06
CCDC60-204ENST00000539847 EHMT2Q96KQ7 1210 aa14.65□□□□□ -0.06
CCDC60-204ENST00000539847 PPP4R3CPQ6ZMV5 832 aa14.64□□□□□ -0.07
CCDC60-204ENST00000539847 DCAF8L2P0C7V8 631 aa14.58□□□□□ -0.08
CCDC60-204ENST00000539847 PABPN1Q86U42 306 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC60-204ENST00000539847 BICRAQ9NZM4 1560 aa14.49□□□□□ -0.09
CCDC60-204ENST00000539847 UNC13AQ9UPW8 1703 aa14.49□□□□□ -0.09
CCDC60-204ENST00000539847 SHROOM4Q9ULL8 1493 aa14.47□□□□□ -0.09
CCDC60-204ENST00000539847 DCAF1Q9Y4B6 1507 aa14.41□□□□□ -0.1
CCDC60-204ENST00000539847 ZCCHC6Q5VYS8 1495 aaKnown RBP14.35□□□□□ -0.11
CCDC60-204ENST00000539847 NCBP3Q53F19 620 aaKnown RBP14.34□□□□□ -0.11
CCDC60-204ENST00000539847 SLC4A1APQ9BWU0 796 aaKnown RBP14.34□□□□□ -0.11
CCDC60-204ENST00000539847 CECR2Q9BXF3 1484 aa14.24□□□□□ -0.13
CCDC60-204ENST00000539847 NPM3O75607 178 aaKnown RBP14.22□□□□□ -0.13
CCDC60-204ENST00000539847 CC2D2AQ9P2K1 1620 aa14.21□□□□□ -0.13
CCDC60-204ENST00000539847 CSRNP3Q8WYN3 585 aa14.2□□□□□ -0.14
CCDC60-204ENST00000539847 EIF4G1Q04637 1599 aaKnown RBP14.17□□□□□ -0.14
CCDC60-204ENST00000539847 SCRIBQ14160 1630 aa14.12□□□□□ -0.15
CCDC60-204ENST00000539847 CNKSR2Q8WXI2 1034 aa14.05□□□□□ -0.16
CCDC60-204ENST00000539847 MSH5O43196 834 aa14.03□□□□□ -0.16
CCDC60-204ENST00000539847 SCAF1Q9H7N4 1312 aaKnown RBP14.03□□□□□ -0.16
CCDC60-204ENST00000539847 MAPK8IP2Q13387 824 aaPredicted RBP13.92□□□□□ -0.18
CCDC60-204ENST00000539847 DNAJC5Q9H3Z4 198 aa13.9□□□□□ -0.18
CCDC60-204ENST00000539847 ZBTB22O15209 634 aa13.84□□□□□ -0.19
CCDC60-204ENST00000539847 CUX2O14529 1486 aa13.74□□□□□ -0.21
CCDC60-204ENST00000539847 NCAPD3P42695 1498 aa13.74□□□□□ -0.21
CCDC60-204ENST00000539847 ATAD2BQ9ULI0 1458 aa13.63□□□□□ -0.23
CCDC60-204ENST00000539847 RNF216Q9NWF9 866 aaPredicted RBP13.63□□□□□ -0.23
CCDC60-204ENST00000539847 ERCC6Q03468 1493 aa13.62□□□□□ -0.23
CCDC60-204ENST00000539847 HMGXB3Q12766 1538 aa13.61□□□□□ -0.23
CCDC60-204ENST00000539847 SMARCA2P51531 1590 aa13.61□□□□□ -0.23
CCDC60-204ENST00000539847 FOXD4L1Q9NU39 408 aa13.56□□□□□ -0.24
CCDC60-204ENST00000539847 SMARCA4P51532 1647 aa13.53□□□□□ -0.24
CCDC60-204ENST00000539847 DMRT2Q9Y5R5 561 aa13.5□□□□□ -0.25
CCDC60-204ENST00000539847 PEG3Q9GZU2 1588 aa13.49□□□□□ -0.25
CCDC60-204ENST00000539847 BAZ1AQ9NRL2 1556 aaPredicted RBP13.49□□□□□ -0.25
CCDC60-204ENST00000539847 BAZ1BQ9UIG0 1483 aaKnown RBP13.47□□□□□ -0.25
CCDC60-204ENST00000539847 HOXD11P31277 338 aaPredicted RBP13.44□□□□□ -0.26
CCDC60-204ENST00000539847 NESP48681 1621 aa13.43□□□□□ -0.26
CCDC60-204ENST00000539847 LAMC3Q9Y6N6 1575 aa13.41□□□□□ -0.26
CCDC60-204ENST00000539847 THOC2Q8NI27 1593 aaKnown RBP13.38□□□□□ -0.27
CCDC60-204ENST00000539847 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
CCDC60-204ENST00000539847 SLC4A2P04920 1241 aa13.31□□□□□ -0.28
CCDC60-204ENST00000539847 MROH2BQ7Z745 1585 aa13.3□□□□□ -0.28
CCDC60-204ENST00000539847 CADPSQ9ULU8 1353 aa13.3□□□□□ -0.28
CCDC60-204ENST00000539847 MRC2Q9UBG0 1479 aa13.23□□□□□ -0.29
CCDC60-204ENST00000539847 KIF21AQ7Z4S6 1674 aa13.23□□□□□ -0.29
CCDC60-204ENST00000539847 WDR62O43379 1518 aa13.21□□□□□ -0.29
CCDC60-204ENST00000539847 SLC24A1O60721 1099 aa13.2□□□□□ -0.3
CCDC60-204ENST00000539847 CEP164Q9UPV0 1460 aa13.14□□□□□ -0.31
CCDC60-204ENST00000539847 CFTRP13569 1480 aa13.11□□□□□ -0.31
CCDC60-204ENST00000539847 FANCD2Q9BXW9 1451 aa13.1□□□□□ -0.31
CCDC60-204ENST00000539847 TRIM41Q8WV44 630 aa13.08□□□□□ -0.32
CCDC60-204ENST00000539847 WIZO95785 1651 aa13.08□□□□□ -0.32
CCDC60-204ENST00000539847 POTEDQ86YR6 584 aa13.07□□□□□ -0.32
CCDC60-204ENST00000539847 MYCNP04198 464 aaPredicted RBP13.06□□□□□ -0.32
CCDC60-204ENST00000539847 OSCARQ8IYS5 282 aa13.06□□□□□ -0.32
CCDC60-204ENST00000539847 AMER1Q5JTC6 1135 aaPredicted RBP13.04□□□□□ -0.32
CCDC60-204ENST00000539847 RTN4Q9NQC3 1192 aaKnown RBP13.04□□□□□ -0.32
CCDC60-204ENST00000539847 RSF1Q96T23 1441 aaPredicted RBP13.02□□□□□ -0.33
CCDC60-204ENST00000539847 TOP2AP11388 1531 aaKnown RBP13□□□□□ -0.33
CCDC60-204ENST00000539847 ATXN8OSP0DMR3 200 aa12.99□□□□□ -0.33
CCDC60-204ENST00000539847 URB2Q14146 1524 aaKnown RBP12.98□□□□□ -0.33
CCDC60-204ENST00000539847 DCAF8L1A6NGE4 600 aa12.93□□□□□ -0.34
CCDC60-204ENST00000539847 IFT140Q96RY7 1462 aa12.91□□□□□ -0.34
CCDC60-204ENST00000539847 ABCC8Q09428 1581 aa12.88□□□□□ -0.35
CCDC60-204ENST00000539847 PRDM2Q13029 1718 aa12.86□□□□□ -0.35
CCDC60-204ENST00000539847 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.83□□□□□ -0.36
CCDC60-204ENST00000539847 CCDC88BA6NC98 1476 aa12.83□□□□□ -0.36
CCDC60-204ENST00000539847 TOPBP1Q92547 1522 aa12.83□□□□□ -0.36
CCDC60-204ENST00000539847 ZNF608Q9ULD9 1512 aaPredicted RBP12.83□□□□□ -0.36
CCDC60-204ENST00000539847 RIMBP3CA6NJZ7 1639 aa12.81□□□□□ -0.36
CCDC60-204ENST00000539847 RIMBP3BA6NNM3 1639 aa12.81□□□□□ -0.36
CCDC60-204ENST00000539847 RIMBP3Q9UFD9 1639 aa12.81□□□□□ -0.36
CCDC60-204ENST00000539847 ARHGEF11O15085 1522 aa12.81□□□□□ -0.36
CCDC60-204ENST00000539847 ATF5Q9Y2D1 282 aaPredicted RBP12.8□□□□□ -0.36
CCDC60-204ENST00000539847 FKBP8Q14318 412 aa12.79□□□□□ -0.36
CCDC60-204ENST00000539847 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.36
CCDC60-204ENST00000539847 EIF4G3O43432 1585 aaKnown RBP12.74□□□□□ -0.37
CCDC60-204ENST00000539847 TARBP1Q13395 1621 aaKnown RBP12.71□□□□□ -0.37
CCDC60-204ENST00000539847 U3KPZ7 1027 aaPredicted RBP12.71□□□□□ -0.37
CCDC60-204ENST00000539847 CYB5RLQ6IPT4 315 aa12.69□□□□□ -0.38
CCDC60-204ENST00000539847 AQRO60306 1485 aaKnown RBP eCLIP12.69□□□□□ -0.38
CCDC60-204ENST00000539847 POLA1P09884 1462 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms