RNA–Protein interactions for RNA: ENST00000538548.5

SFSWAP-207, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 2,636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-207ENST00000538548 CADPSQ9ULU8 1353 aa26.28■■□□□ 1.8
SFSWAP-207ENST00000538548 CCER2I3L3R5 266 aa26.28■■□□□ 1.8
SFSWAP-207ENST00000538548 PPP1R15AO75807 674 aaPredicted RBP26.28■■□□□ 1.8
SFSWAP-207ENST00000538548 WDR97A6NE52 1622 aa26.28■■□□□ 1.8
SFSWAP-207ENST00000538548 ITGAEP38570 1179 aa26.26■■□□□ 1.79
SFSWAP-207ENST00000538548 SETD5Q9C0A6 1442 aa26.22■■□□□ 1.79
SFSWAP-207ENST00000538548 ARHGAP35Q9NRY4 1499 aa26.21■■□□□ 1.79
SFSWAP-207ENST00000538548 CUX1P39880 1505 aa26.21■■□□□ 1.79
SFSWAP-207ENST00000538548 TIMELESSQ9UNS1 1208 aa26.19■■□□□ 1.78
SFSWAP-207ENST00000538548 TRIM52Q96A61 297 aa26.17■■□□□ 1.78
SFSWAP-207ENST00000538548 MSH5O43196 834 aa26.15■■□□□ 1.78
SFSWAP-207ENST00000538548 ANP32CO43423 234 aa26.15■■□□□ 1.78
SFSWAP-207ENST00000538548 MAP3K1Q13233 1512 aa26.14■■□□□ 1.78
SFSWAP-207ENST00000538548 KIF27Q86VH2 1401 aa26.13■■□□□ 1.77
SFSWAP-207ENST00000538548 FANCIQ9NVI1 1328 aa26.12■■□□□ 1.77
SFSWAP-207ENST00000538548 SIN3AQ96ST3 1273 aa26.11■■□□□ 1.77
SFSWAP-207ENST00000538548 TIAM1Q13009 1591 aa26.1■■□□□ 1.77
SFSWAP-207ENST00000538548 FANCD2Q9BXW9 1451 aa26.05■■□□□ 1.76
SFSWAP-207ENST00000538548 LRRC9Q6ZRR7 1453 aa26■■□□□ 1.75
SFSWAP-207ENST00000538548 CDK11AQ9UQ88 783 aaPredicted RBP25.98■■□□□ 1.75
SFSWAP-207ENST00000538548 PHLDB1Q86UU1 1377 aa25.97■■□□□ 1.75
SFSWAP-207ENST00000538548 HIRIP3Q9BW71 556 aaPredicted RBP25.96■■□□□ 1.75
SFSWAP-207ENST00000538548 ERICH6Q7L0X2 663 aa25.95■■□□□ 1.74
SFSWAP-207ENST00000538548 PRDM2Q13029 1718 aa25.92■■□□□ 1.74
SFSWAP-207ENST00000538548 MYT1LQ9UL68 1186 aa25.91■■□□□ 1.74
SFSWAP-207ENST00000538548 FGD5Q6ZNL6 1462 aa25.91■■□□□ 1.74
SFSWAP-207ENST00000538548 FAM50AQ14320 339 aaKnown RBP25.9■■□□□ 1.74
SFSWAP-207ENST00000538548 ERICH6BQ5W0A0 696 aa25.87■■□□□ 1.73
SFSWAP-207ENST00000538548 CFAP43Q8NDM7 1665 aa25.85■■□□□ 1.73
SFSWAP-207ENST00000538548 RAD54L2Q9Y4B4 1467 aa25.85■■□□□ 1.73
SFSWAP-207ENST00000538548 HNRNPUQ00839 825 aaKnown RBP eCLIP25.83■■□□□ 1.72
SFSWAP-207ENST00000538548 TONSLQ96HA7 1378 aa25.82■■□□□ 1.72
SFSWAP-207ENST00000538548 FHAD1B1AJZ9 1412 aa25.81■■□□□ 1.72
SFSWAP-207ENST00000538548 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.8■■□□□ 1.72
SFSWAP-207ENST00000538548 IRX6P78412 446 aaPredicted RBP25.76■■□□□ 1.71
SFSWAP-207ENST00000538548 TOPBP1Q92547 1522 aa25.76■■□□□ 1.71
SFSWAP-207ENST00000538548 IGF1RP08069 1367 aa25.75■■□□□ 1.71
SFSWAP-207ENST00000538548 PPP4R2Q9NY27 417 aa25.74■■□□□ 1.71
SFSWAP-207ENST00000538548 LAMC3Q9Y6N6 1575 aa25.74■■□□□ 1.71
SFSWAP-207ENST00000538548 URB2Q14146 1524 aaKnown RBP25.73■■□□□ 1.71
SFSWAP-207ENST00000538548 PCF11O94913 1555 aaKnown RBP25.72■■□□□ 1.71
SFSWAP-207ENST00000538548 POLA1P09884 1462 aaPredicted RBP25.71■■□□□ 1.71
SFSWAP-207ENST00000538548 PDS5BQ9NTI5 1447 aa25.7■■□□□ 1.7
SFSWAP-207ENST00000538548 KIF21AQ7Z4S6 1674 aa25.68■■□□□ 1.7
SFSWAP-207ENST00000538548 DNMBPQ6XZF7 1577 aa25.67■■□□□ 1.7
SFSWAP-207ENST00000538548 CARMIL1Q5VZK9 1371 aa25.66■■□□□ 1.7
SFSWAP-207ENST00000538548 UACAQ9BZF9 1416 aa25.65■■□□□ 1.7
SFSWAP-207ENST00000538548 CCDC18Q5T9S5 1454 aa25.65■■□□□ 1.7
SFSWAP-207ENST00000538548 TDRD9Q8NDG6 1382 aaKnown RBP25.65■■□□□ 1.7
SFSWAP-207ENST00000538548 DEKP35659 375 aaKnown RBP25.64■■□□□ 1.7
SFSWAP-207ENST00000538548 FYCO1Q9BQS8 1478 aa25.61■■□□□ 1.69
SFSWAP-207ENST00000538548 HFM1A2PYH4 1435 aa25.6■■□□□ 1.69
SFSWAP-207ENST00000538548 KDM5BQ9UGL1 1544 aa25.59■■□□□ 1.69
SFSWAP-207ENST00000538548 FGD6Q6ZV73 1430 aa25.57■■□□□ 1.68
SFSWAP-207ENST00000538548 WASHC2AQ641Q2 1341 aa25.55■■□□□ 1.68
SFSWAP-207ENST00000538548 PTPN23Q9H3S7 1636 aa25.55■■□□□ 1.68
SFSWAP-207ENST00000538548 CASKIN1Q8WXD9 1431 aa25.54■■□□□ 1.68
SFSWAP-207ENST00000538548 AQRO60306 1485 aaKnown RBP eCLIP25.54■■□□□ 1.684e-7■■■■□ 22.9
SFSWAP-207ENST00000538548 NCOA2Q15596 1464 aa25.53■■□□□ 1.68
SFSWAP-207ENST00000538548 ATP1B4Q9UN42 357 aaPredicted RBP25.52■■□□□ 1.68
SFSWAP-207ENST00000538548 NOP58Q9Y2X3 529 aaKnown RBP25.51■■□□□ 1.68
SFSWAP-207ENST00000538548 P3H3Q8IVL6 736 aa25.51■■□□□ 1.67
SFSWAP-207ENST00000538548 B4GALNT3Q6L9W6 998 aa25.5■■□□□ 1.67
SFSWAP-207ENST00000538548 EFCAB5A4FU69 1503 aa25.49■■□□□ 1.67
SFSWAP-207ENST00000538548 CNTLNQ9NXG0 1405 aa25.49■■□□□ 1.67
SFSWAP-207ENST00000538548 FHOD3Q2V2M9 1422 aa25.48■■□□□ 1.67
SFSWAP-207ENST00000538548 ZBED9Q6R2W3 1325 aa25.48■■□□□ 1.67
SFSWAP-207ENST00000538548 HSPA5P11021 654 aaKnown RBP25.48■■□□□ 1.67
SFSWAP-207ENST00000538548 ABCA10Q8WWZ4 1543 aa25.47■■□□□ 1.67
SFSWAP-207ENST00000538548 PTPRKQ15262 1439 aa25.47■■□□□ 1.67
SFSWAP-207ENST00000538548 NAIPQ13075 1403 aa25.46■■□□□ 1.67
SFSWAP-207ENST00000538548 CCDC184Q52MB2 194 aa25.43■■□□□ 1.66
SFSWAP-207ENST00000538548 EIF4G2P78344 907 aaKnown RBP eCLIP25.41■■□□□ 1.661e-6■■■□□ 17.3
SFSWAP-207ENST00000538548 FMN1Q68DA7 1419 aa25.4■■□□□ 1.66
SFSWAP-207ENST00000538548 ERCC6Q03468 1493 aa25.4■■□□□ 1.66
SFSWAP-207ENST00000538548 PRKRIP1Q9H875 184 aaPredicted RBP25.4■■□□□ 1.66
SFSWAP-207ENST00000538548 PAK3O75914 559 aaPredicted RBP25.36■■□□□ 1.65
SFSWAP-207ENST00000538548 FAM9BQ8IZU0 186 aa25.36■■□□□ 1.65
SFSWAP-207ENST00000538548 NBR1Q14596 966 aa25.35■■□□□ 1.65
SFSWAP-207ENST00000538548 MRS2Q9HD23 443 aa25.35■■□□□ 1.65
SFSWAP-207ENST00000538548 MTUS2Q5JR59 1369 aa25.34■■□□□ 1.65
SFSWAP-207ENST00000538548 MRC2Q9UBG0 1479 aa25.34■■□□□ 1.65
SFSWAP-207ENST00000538548 PRKCSHP14314 528 aaPredicted RBP25.34■■□□□ 1.65
SFSWAP-207ENST00000538548 GAPVD1Q14C86 1478 aa25.34■■□□□ 1.65
SFSWAP-207ENST00000538548 NCOA1Q15788 1441 aa25.33■■□□□ 1.65
SFSWAP-207ENST00000538548 CCDC7Q96M83 1385 aa25.32■■□□□ 1.64
SFSWAP-207ENST00000538548 MYOM3Q5VTT5 1437 aa25.31■■□□□ 1.64
SFSWAP-207ENST00000538548 SNAPC4Q5SXM2 1469 aa25.31■■□□□ 1.64
SFSWAP-207ENST00000538548 HECW1Q76N89 1606 aa25.29■■□□□ 1.64
SFSWAP-207ENST00000538548 ZNF608Q9ULD9 1512 aaPredicted RBP25.28■■□□□ 1.64
SFSWAP-207ENST00000538548 ANP32AP39687 249 aaKnown RBP25.28■■□□□ 1.64
SFSWAP-207ENST00000538548 IPO9Q96P70 1041 aaKnown RBP25.28■■□□□ 1.64
SFSWAP-207ENST00000538548 SMG6Q86US8 1419 aaKnown RBP25.26■■□□□ 1.63
SFSWAP-207ENST00000538548 CTTNBP2Q8WZ74 1663 aa25.25■■□□□ 1.63
SFSWAP-207ENST00000538548 DENND4BO75064 1496 aaPredicted RBP25.25■■□□□ 1.63
SFSWAP-207ENST00000538548 TARBP1Q13395 1621 aaKnown RBP25.25■■□□□ 1.63
SFSWAP-207ENST00000538548 C11orf95C9JLR9 678 aaPredicted RBP25.24■■□□□ 1.63
SFSWAP-207ENST00000538548 RTL5Q5HYW3 569 aaPredicted RBP25.23■■□□□ 1.63
SFSWAP-207ENST00000538548 GCC2Q8IWJ2 1684 aa25.22■■□□□ 1.63
SFSWAP-207ENST00000538548 ABCA5Q8WWZ7 1642 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms