RNA–Protein interactions for RNA: ENST00000538548.5

SFSWAP-207, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 2,636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-207ENST00000538548 NISCHQ9Y2I1 1504 aa36.1■■■■□ 3.37
SFSWAP-207ENST00000538548 HRCP23327 699 aa31.32■■■□□ 2.6
SFSWAP-207ENST00000538548 SHROOM4Q9ULL8 1493 aa31.3■■■□□ 2.6
SFSWAP-207ENST00000538548 SUPT5HO00267 1087 aaKnown RBP31.12■■■□□ 2.57
SFSWAP-207ENST00000538548 CCDC180Q9P1Z9 1646 aa30.93■■■□□ 2.54
SFSWAP-207ENST00000538548 MYO15BQ96JP2 1530 aa30.83■■■□□ 2.53
SFSWAP-207ENST00000538548 CHIC1Q5VXU3 224 aa30.71■■■□□ 2.51
SFSWAP-207ENST00000538548 PCGF6Q9BYE7 350 aa30.66■■■□□ 2.5
SFSWAP-207ENST00000538548 DCAF8L2P0C7V8 631 aa30.64■■■□□ 2.5
SFSWAP-207ENST00000538548 ZCCHC6Q5VYS8 1495 aaKnown RBP30.62■■■□□ 2.49
SFSWAP-207ENST00000538548 PPARGC1BQ86YN6 1023 aaKnown RBP30.46■■■□□ 2.47
SFSWAP-207ENST00000538548 DCAF1Q9Y4B6 1507 aa30.33■■■□□ 2.45
SFSWAP-207ENST00000538548 PELP1Q8IZL8 1130 aaKnown RBP30■■■□□ 2.39
SFSWAP-207ENST00000538548 TRIM26Q12899 539 aaPredicted RBP29.9■■■□□ 2.38
SFSWAP-207ENST00000538548 ABCC9O60706 1549 aa29.82■■■□□ 2.36
SFSWAP-207ENST00000538548 LOC105371045A0A1W2PR82 267 aa29.81■■■□□ 2.36
SFSWAP-207ENST00000538548 ZEB1P37275 1124 aaPredicted RBP29.68■■■□□ 2.34
SFSWAP-207ENST00000538548 SCAF1Q9H7N4 1312 aaKnown RBP29.4■■■□□ 2.3
SFSWAP-207ENST00000538548 SCRIBQ14160 1630 aa29.15■■■□□ 2.26
SFSWAP-207ENST00000538548 TRIM41Q8WV44 630 aa28.93■■■□□ 2.22
SFSWAP-207ENST00000538548 NACADO15069 1562 aa28.87■■■□□ 2.21
SFSWAP-207ENST00000538548 ACIN1Q9UKV3 1341 aaKnown RBP28.84■■■□□ 2.21
SFSWAP-207ENST00000538548 MYT1Q01538 1121 aa28.82■■■□□ 2.2
SFSWAP-207ENST00000538548 RSF1Q96T23 1441 aaPredicted RBP28.82■■■□□ 2.2
SFSWAP-207ENST00000538548 FAM9AQ8IZU1 332 aaPredicted RBP28.71■■■□□ 2.19
SFSWAP-207ENST00000538548 NEUROD1Q13562 356 aa28.69■■■□□ 2.18
SFSWAP-207ENST00000538548 RB1CC1Q8TDY2 1594 aa28.66■■■□□ 2.18
SFSWAP-207ENST00000538548 CENPBP07199 599 aaPredicted RBP28.56■■■□□ 2.16
SFSWAP-207ENST00000538548 GTF3C3Q9Y5Q9 886 aa28.51■■■□□ 2.15
SFSWAP-207ENST00000538548 CCER1Q8TC90 406 aaPredicted RBP28.49■■■□□ 2.15
SFSWAP-207ENST00000538548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.49■■■□□ 2.15
SFSWAP-207ENST00000538548 DIEXFQ68CQ4 756 aaKnown RBP28.45■■■□□ 2.15
SFSWAP-207ENST00000538548 PABPN1Q86U42 306 aaKnown RBP eCLIP28.45■■■□□ 2.142e-7■■□□□ 12.4
SFSWAP-207ENST00000538548 EHMT2Q96KQ7 1210 aa28.42■■■□□ 2.14
SFSWAP-207ENST00000538548 CECR2Q9BXF3 1484 aa28.38■■■□□ 2.13
SFSWAP-207ENST00000538548 UNC13AQ9UPW8 1703 aa28.24■■■□□ 2.11
SFSWAP-207ENST00000538548 MROH2BQ7Z745 1585 aa28.12■■■□□ 2.09
SFSWAP-207ENST00000538548 WRNQ14191 1432 aaPredicted RBP eCLIP28.09■■■□□ 2.09
SFSWAP-207ENST00000538548 ZNF316A6NFI3 1004 aaPredicted RBP28.01■■■□□ 2.07
SFSWAP-207ENST00000538548 BICRAQ9NZM4 1560 aa27.96■■■□□ 2.07
SFSWAP-207ENST00000538548 EIF4G1Q04637 1599 aaKnown RBP27.94■■■□□ 2.06
SFSWAP-207ENST00000538548 WIZO95785 1651 aa27.92■■■□□ 2.06
SFSWAP-207ENST00000538548 CEP162Q5TB80 1403 aa27.85■■■□□ 2.05
SFSWAP-207ENST00000538548 BAZ1AQ9NRL2 1556 aaPredicted RBP27.83■■■□□ 2.05
SFSWAP-207ENST00000538548 YTHDC1Q96MU7 727 aaKnown RBP27.8■■■□□ 2.04
SFSWAP-207ENST00000538548 TTBK1Q5TCY1 1321 aaPredicted RBP27.77■■■□□ 2.04
SFSWAP-207ENST00000538548 TNIKQ9UKE5 1360 aa27.74■■■□□ 2.03
SFSWAP-207ENST00000538548 MIER1Q8N108 512 aa27.7■■■□□ 2.02
SFSWAP-207ENST00000538548 SMARCA4P51532 1647 aa27.67■■■□□ 2.02
SFSWAP-207ENST00000538548 CCDC88BA6NC98 1476 aa27.66■■■□□ 2.02
SFSWAP-207ENST00000538548 ABCC8Q09428 1581 aa27.61■■■□□ 2.01
SFSWAP-207ENST00000538548 EEA1Q15075 1411 aa27.57■■■□□ 2
SFSWAP-207ENST00000538548 SOGA1O94964 1423 aa27.53■■■□□ 2
SFSWAP-207ENST00000538548 TOP2AP11388 1531 aaKnown RBP27.48■■□□□ 1.99
SFSWAP-207ENST00000538548 CLSPNQ9HAW4 1339 aa27.47■■□□□ 1.99
SFSWAP-207ENST00000538548 CSRNP3Q8WYN3 585 aa27.46■■□□□ 1.99
SFSWAP-207ENST00000538548 UBTFP17480 764 aaKnown RBP27.43■■□□□ 1.98
SFSWAP-207ENST00000538548 GOLGA3Q08378 1498 aa27.42■■□□□ 1.98
SFSWAP-207ENST00000538548 SMARCA2P51531 1590 aa27.36■■□□□ 1.97
SFSWAP-207ENST00000538548 HNRNPUL2Q1KMD3 747 aaKnown RBP27.35■■□□□ 1.97
SFSWAP-207ENST00000538548 RUSC2Q8N2Y8 1516 aa27.33■■□□□ 1.97
SFSWAP-207ENST00000538548 SUPT16HQ9Y5B9 1047 aaKnown RBP27.26■■□□□ 1.95
SFSWAP-207ENST00000538548 ATAD2BQ9ULI0 1458 aa27.23■■□□□ 1.95
SFSWAP-207ENST00000538548 CEP164Q9UPV0 1460 aa27.17■■□□□ 1.94
SFSWAP-207ENST00000538548 KIF21BO75037 1637 aa27.15■■□□□ 1.94
SFSWAP-207ENST00000538548 VPS8Q8N3P4 1428 aa27.15■■□□□ 1.94
SFSWAP-207ENST00000538548 CLIP1P30622 1438 aa27.14■■□□□ 1.94
SFSWAP-207ENST00000538548 BAZ1BQ9UIG0 1483 aaKnown RBP27.12■■□□□ 1.93
SFSWAP-207ENST00000538548 TSHZ2Q9NRE2 1034 aa27.06■■□□□ 1.92
SFSWAP-207ENST00000538548 ANP32EQ9BTT0 268 aa27.05■■□□□ 1.92
SFSWAP-207ENST00000538548 PEG3Q9GZU2 1588 aa27.05■■□□□ 1.92
SFSWAP-207ENST00000538548 APLP2Q06481 763 aa27.04■■□□□ 1.92
SFSWAP-207ENST00000538548 DHX57Q6P158 1386 aaKnown RBP26.99■■□□□ 1.91
SFSWAP-207ENST00000538548 SYNJ1O43426 1573 aa26.88■■□□□ 1.89
SFSWAP-207ENST00000538548 RAPGEF2Q9Y4G8 1499 aa26.82■■□□□ 1.88
SFSWAP-207ENST00000538548 NCAPD3P42695 1498 aa26.78■■□□□ 1.88
SFSWAP-207ENST00000538548 BCL11AQ9H165 835 aa26.75■■□□□ 1.87
SFSWAP-207ENST00000538548 CC2D2AQ9P2K1 1620 aa26.71■■□□□ 1.87
SFSWAP-207ENST00000538548 CUX2O14529 1486 aa26.68■■□□□ 1.86
SFSWAP-207ENST00000538548 RRBP1Q9P2E9 1410 aaKnown RBP26.66■■□□□ 1.86
SFSWAP-207ENST00000538548 HMGXB3Q12766 1538 aa26.64■■□□□ 1.86
SFSWAP-207ENST00000538548 DNAJC5BQ9UF47 199 aa26.63■■□□□ 1.85
SFSWAP-207ENST00000538548 RANGAP1P46060 587 aaPredicted RBP26.61■■□□□ 1.85
SFSWAP-207ENST00000538548 ARAP1Q96P48 1450 aa26.59■■□□□ 1.85
SFSWAP-207ENST00000538548 KCNH8Q96L42 1107 aa26.57■■□□□ 1.84
SFSWAP-207ENST00000538548 ERICH3Q5RHP9 1530 aa26.57■■□□□ 1.84
SFSWAP-207ENST00000538548 KANK4Q5T7N3 995 aaPredicted RBP26.55■■□□□ 1.84
SFSWAP-207ENST00000538548 BCANQ96GW7 911 aa26.54■■□□□ 1.84
SFSWAP-207ENST00000538548 FKBP8Q14318 412 aa26.53■■□□□ 1.84
SFSWAP-207ENST00000538548 TOP2BQ02880 1626 aa26.48■■□□□ 1.83
SFSWAP-207ENST00000538548 CCNB3Q8WWL7 1395 aa26.48■■□□□ 1.83
SFSWAP-207ENST00000538548 PRXQ9BXM0 1461 aa26.47■■□□□ 1.83
SFSWAP-207ENST00000538548 RBM19Q9Y4C8 960 aaKnown RBP26.46■■□□□ 1.83
SFSWAP-207ENST00000538548 MAPKBP1O60336 1514 aa26.42■■□□□ 1.82
SFSWAP-207ENST00000538548 NEFLP07196 543 aa26.41■■□□□ 1.82
SFSWAP-207ENST00000538548 BIVM-ERCC5R4GMW8 1640 aa26.36■■□□□ 1.81
SFSWAP-207ENST00000538548 RAB3GAP2Q9H2M9 1393 aa26.36■■□□□ 1.81
SFSWAP-207ENST00000538548 CFTRP13569 1480 aa26.35■■□□□ 1.81
SFSWAP-207ENST00000538548 DDX10Q13206 875 aaKnown RBP26.33■■□□□ 1.8
SFSWAP-207ENST00000538548 NESP48681 1621 aa26.29■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms