RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 KIAA0586Q9BVV6 1533 aa5.54□□□□□ -1.52
MCF2-208ENST00000519895 SHROOM2Q13796 1616 aa5.54□□□□□ -1.52
MCF2-208ENST00000519895 CFAP43Q8NDM7 1665 aa5.53□□□□□ -1.52
MCF2-208ENST00000519895 TSPOAP1O95153 1857 aa5.53□□□□□ -1.52
MCF2-208ENST00000519895 MAGI1Q96QZ7 1491 aaPredicted RBP5.53□□□□□ -1.52
MCF2-208ENST00000519895 DCAF8L2P0C7V8 631 aa5.52□□□□□ -1.53
MCF2-208ENST00000519895 PRDM2Q13029 1718 aa5.52□□□□□ -1.53
MCF2-208ENST00000519895 ABCC8Q09428 1581 aa5.52□□□□□ -1.53
MCF2-208ENST00000519895 LRP5O75197 1615 aa5.51□□□□□ -1.53
MCF2-208ENST00000519895 TARBP1Q13395 1621 aaKnown RBP5.51□□□□□ -1.53
MCF2-208ENST00000519895 TEX14Q8IWB6 1497 aa5.5□□□□□ -1.53
MCF2-208ENST00000519895 YEATS2Q9ULM3 1422 aa5.48□□□□□ -1.53
MCF2-208ENST00000519895 STRCQ7RTU9 1775 aa5.48□□□□□ -1.53
MCF2-208ENST00000519895 BCORL1Q5H9F3 1711 aa5.47□□□□□ -1.53
MCF2-208ENST00000519895 POTEHQ6S545 545 aa5.46□□□□□ -1.54
MCF2-208ENST00000519895 PREX1Q8TCU6 1659 aa5.45□□□□□ -1.54
MCF2-208ENST00000519895 MAP3K4Q9Y6R4 1608 aa5.45□□□□□ -1.54
MCF2-208ENST00000519895 CEP170Q5SW79 1584 aa5.45□□□□□ -1.54
MCF2-208ENST00000519895 CFTRP13569 1480 aa5.45□□□□□ -1.54
MCF2-208ENST00000519895 KIF21BO75037 1637 aa5.44□□□□□ -1.54
MCF2-208ENST00000519895 PLPPR3Q6T4P5 718 aa5.43□□□□□ -1.54
MCF2-208ENST00000519895 COL17A1Q9UMD9 1497 aaPredicted RBP5.42□□□□□ -1.54
MCF2-208ENST00000519895 UPF1Q92900 1129 aaKnown RBP eCLIP5.4□□□□□ -1.55
MCF2-208ENST00000519895 MADDQ8WXG6 1647 aa5.4□□□□□ -1.55
MCF2-208ENST00000519895 EPRSP07814 1512 aaKnown RBP5.39□□□□□ -1.55
MCF2-208ENST00000519895 ADCY10Q96PN6 1610 aa5.39□□□□□ -1.55
MCF2-208ENST00000519895 NPM1P06748 294 aaKnown RBP eCLIP5.39□□□□□ -1.55
MCF2-208ENST00000519895 SETD1AO15047 1707 aaKnown RBP5.39□□□□□ -1.55
MCF2-208ENST00000519895 C1QBPQ07021 282 aaKnown RBP5.38□□□□□ -1.55
MCF2-208ENST00000519895 TOPBP1Q92547 1522 aa5.38□□□□□ -1.55
MCF2-208ENST00000519895 AQRO60306 1485 aaKnown RBP eCLIP5.37□□□□□ -1.55
MCF2-208ENST00000519895 CHMP7Q8WUX9 453 aaPredicted RBP5.37□□□□□ -1.55
MCF2-208ENST00000519895 DNMBPQ6XZF7 1577 aa5.37□□□□□ -1.55
MCF2-208ENST00000519895 PLB1Q6P1J6 1458 aa5.37□□□□□ -1.55
MCF2-208ENST00000519895 RGS17Q9UGC6 210 aaPredicted RBP5.36□□□□□ -1.55
MCF2-208ENST00000519895 PPP6R1Q9UPN7 881 aa5.36□□□□□ -1.55
MCF2-208ENST00000519895 CDK12Q9NYV4 1490 aaPredicted RBP5.36□□□□□ -1.55
MCF2-208ENST00000519895 RIMS1Q86UR5 1692 aaKnown RBP5.35□□□□□ -1.55
MCF2-208ENST00000519895 RNF39Q9H2S5 420 aa5.35□□□□□ -1.55
MCF2-208ENST00000519895 TTC37Q6PGP7 1564 aa5.35□□□□□ -1.55
MCF2-208ENST00000519895 SCAF1Q9H7N4 1312 aaKnown RBP5.34□□□□□ -1.55
MCF2-208ENST00000519895 ADRA2BP18089 450 aa5.34□□□□□ -1.55
MCF2-208ENST00000519895 FBLN2P98095 1184 aa5.34□□□□□ -1.55
MCF2-208ENST00000519895 TOP2AP11388 1531 aaKnown RBP5.34□□□□□ -1.55
MCF2-208ENST00000519895 RBM33Q96EV2 1170 aaKnown RBP5.34□□□□□ -1.55
MCF2-208ENST00000519895 NHSL1Q5SYE7 1610 aa5.34□□□□□ -1.56
MCF2-208ENST00000519895 GRIN2BQ13224 1484 aa5.33□□□□□ -1.56
MCF2-208ENST00000519895 NUP160Q12769 1436 aa5.33□□□□□ -1.56
MCF2-208ENST00000519895 HSPA1LP34931 641 aa5.33□□□□□ -1.56
MCF2-208ENST00000519895 RAPGEF6Q8TEU7 1601 aa5.33□□□□□ -1.56
MCF2-208ENST00000519895 UBAP1LF5GYI3 381 aa5.32□□□□□ -1.56
MCF2-208ENST00000519895 CUX1P39880 1505 aa5.32□□□□□ -1.56
MCF2-208ENST00000519895 MROH2BQ7Z745 1585 aa5.31□□□□□ -1.56
MCF2-208ENST00000519895 MAGI3Q5TCQ9 1506 aa5.3□□□□□ -1.56
MCF2-208ENST00000519895 ARAP3Q8WWN8 1544 aa5.3□□□□□ -1.56
MCF2-208ENST00000519895 PBRM1Q86U86 1689 aa5.29□□□□□ -1.56
MCF2-208ENST00000519895 FER1L4A9Z1Z3 1794 aa5.28□□□□□ -1.56
MCF2-208ENST00000519895 HSPA2P54652 639 aa5.28□□□□□ -1.56
MCF2-208ENST00000519895 KIAA0556O60303 1618 aa5.28□□□□□ -1.56
MCF2-208ENST00000519895 CPS1P31327 1500 aa5.28□□□□□ -1.56
MCF2-208ENST00000519895 PTPRKQ15262 1439 aa5.28□□□□□ -1.56
MCF2-208ENST00000519895 SENP3-EIF4A1A0A087X0R7 540 aa5.28□□□□□ -1.56
MCF2-208ENST00000519895 ZRANB1Q9UGI0 708 aa5.27□□□□□ -1.57
MCF2-208ENST00000519895 SETBP1Q9Y6X0 1596 aa5.26□□□□□ -1.57
MCF2-208ENST00000519895 PHLDB1Q86UU1 1377 aa5.26□□□□□ -1.57
MCF2-208ENST00000519895 PRELPP51888 382 aa5.26□□□□□ -1.57
MCF2-208ENST00000519895 SETD1BQ9UPS6 1966 aaKnown RBP5.26□□□□□ -1.57
MCF2-208ENST00000519895 POTEAQ6S8J7 498 aa5.25□□□□□ -1.57
MCF2-208ENST00000519895 TOM1O60784 492 aa5.25□□□□□ -1.57
MCF2-208ENST00000519895 YY1P25490 414 aa5.25□□□□□ -1.57
MCF2-208ENST00000519895 WIZO95785 1651 aa5.24□□□□□ -1.57
MCF2-208ENST00000519895 GRIN2AQ12879 1464 aa5.23□□□□□ -1.57
MCF2-208ENST00000519895 NCOA1Q15788 1441 aa5.23□□□□□ -1.57
MCF2-208ENST00000519895 ABCC2Q92887 1545 aa5.22□□□□□ -1.57
MCF2-208ENST00000519895 UHRF1BP1LA0JNW5 1464 aa5.22□□□□□ -1.57
MCF2-208ENST00000519895 POLA1P09884 1462 aaPredicted RBP5.22□□□□□ -1.57
MCF2-208ENST00000519895 POGZQ7Z3K3 1410 aa5.22□□□□□ -1.57
MCF2-208ENST00000519895 C1QTNF8P60827 252 aa5.21□□□□□ -1.58
MCF2-208ENST00000519895 ALKQ9UM73 1620 aa5.21□□□□□ -1.58
MCF2-208ENST00000519895 UHRF1BP1Q6BDS2 1440 aa5.21□□□□□ -1.58
MCF2-208ENST00000519895 ASXL2Q76L83 1435 aa5.2□□□□□ -1.58
MCF2-208ENST00000519895 PRG4Q92954 1404 aaPredicted RBP5.19□□□□□ -1.58
MCF2-208ENST00000519895 ARHGEF40Q8TER5 1519 aa5.19□□□□□ -1.58
MCF2-208ENST00000519895 EHMT2Q96KQ7 1210 aa5.18□□□□□ -1.58
MCF2-208ENST00000519895 LRRC7Q96NW7 1537 aa5.17□□□□□ -1.58
MCF2-208ENST00000519895 FANCAO15360 1455 aa5.17□□□□□ -1.58
MCF2-208ENST00000519895 CCDC88BA6NC98 1476 aa5.16□□□□□ -1.58
MCF2-208ENST00000519895 PLA2R1Q13018 1463 aa5.16□□□□□ -1.58
MCF2-208ENST00000519895 IGSF5Q9NSI5 407 aa5.16□□□□□ -1.58
MCF2-208ENST00000519895 RNF17Q9BXT8 1623 aaKnown RBP5.16□□□□□ -1.58
MCF2-208ENST00000519895 ADAMTS12P58397 1594 aa5.16□□□□□ -1.58
MCF2-208ENST00000519895 ARHGEF12Q9NZN5 1544 aa5.15□□□□□ -1.58
MCF2-208ENST00000519895 CCDC125Q86Z20 511 aa5.15□□□□□ -1.59
MCF2-208ENST00000519895 ABCA5Q8WWZ7 1642 aa5.15□□□□□ -1.59
MCF2-208ENST00000519895 CUL7Q14999 1698 aa5.15□□□□□ -1.59
MCF2-208ENST00000519895 SOGA1O94964 1423 aa5.13□□□□□ -1.59
MCF2-208ENST00000519895 SYNMO15061 1565 aa5.13□□□□□ -1.59
MCF2-208ENST00000519895 KDM5CP41229 1560 aa5.13□□□□□ -1.59
MCF2-208ENST00000519895 BIVM-ERCC5R4GMW8 1640 aa5.11□□□□□ -1.59
MCF2-208ENST00000519895 KDM5BQ9UGL1 1544 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms