RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 THOC2Q8NI27 1593 aaKnown RBP14.91□□□□□ -0.02
USP53-207ENST00000510852 WDR62O43379 1518 aa14.91□□□□□ -0.02
USP53-207ENST00000510852 FGD5Q6ZNL6 1462 aa14.91□□□□□ -0.02
USP53-207ENST00000510852 FBLN2P98095 1184 aa14.9□□□□□ -0.02
USP53-207ENST00000510852 POLA1P09884 1462 aaPredicted RBP14.88□□□□□ -0.03
USP53-207ENST00000510852 FAM9AQ8IZU1 332 aaPredicted RBP14.88□□□□□ -0.03
USP53-207ENST00000510852 CHMP4AQ9BY43 222 aa14.86□□□□□ -0.03
USP53-207ENST00000510852 FKBP8Q14318 412 aa14.85□□□□□ -0.03
USP53-207ENST00000510852 SOGA1O94964 1423 aa14.84□□□□□ -0.03
USP53-207ENST00000510852 RAD54L2Q9Y4B4 1467 aa14.83□□□□□ -0.03
USP53-207ENST00000510852 UBE2Q2Q8WVN8 375 aa14.82□□□□□ -0.04
USP53-207ENST00000510852 CUX2O14529 1486 aa14.81□□□□□ -0.04
USP53-207ENST00000510852 RUSC2Q8N2Y8 1516 aa14.78□□□□□ -0.04
USP53-207ENST00000510852 ABCA10Q8WWZ4 1543 aa14.77□□□□□ -0.04
USP53-207ENST00000510852 IFT140Q96RY7 1462 aa14.77□□□□□ -0.05
USP53-207ENST00000510852 ADRA2BP18089 450 aa14.76□□□□□ -0.05
USP53-207ENST00000510852 TARBP1Q13395 1621 aaKnown RBP14.76□□□□□ -0.05
USP53-207ENST00000510852 SAMD1Q6SPF0 538 aaPredicted RBP14.75□□□□□ -0.05
USP53-207ENST00000510852 KIF27Q86VH2 1401 aa14.75□□□□□ -0.05
USP53-207ENST00000510852 EEA1Q15075 1411 aa14.73□□□□□ -0.05
USP53-207ENST00000510852 TDRD9Q8NDG6 1382 aaKnown RBP14.72□□□□□ -0.05
USP53-207ENST00000510852 PPP6R1Q9UPN7 881 aa14.72□□□□□ -0.05
USP53-207ENST00000510852 WDR97A6NE52 1622 aa14.71□□□□□ -0.05
USP53-207ENST00000510852 CNKSR2Q8WXI2 1034 aa14.69□□□□□ -0.06
USP53-207ENST00000510852 ZNF608Q9ULD9 1512 aaPredicted RBP14.69□□□□□ -0.06
USP53-207ENST00000510852 AQRO60306 1485 aaKnown RBP eCLIP14.68□□□□□ -0.06
USP53-207ENST00000510852 CDK11BP21127 795 aaKnown RBP14.67□□□□□ -0.06
USP53-207ENST00000510852 CDK11AQ9UQ88 783 aaPredicted RBP14.67□□□□□ -0.06
USP53-207ENST00000510852 GAPVD1Q14C86 1478 aa14.67□□□□□ -0.06
USP53-207ENST00000510852 ABCA5Q8WWZ7 1642 aa14.66□□□□□ -0.06
USP53-207ENST00000510852 IGF1RP08069 1367 aa14.66□□□□□ -0.06
USP53-207ENST00000510852 PDE4CQ08493 712 aa14.63□□□□□ -0.07
USP53-207ENST00000510852 DHX37Q8IY37 1157 aaKnown RBP14.62□□□□□ -0.07
USP53-207ENST00000510852 IGSF3O75054 1194 aa14.62□□□□□ -0.07
USP53-207ENST00000510852 EIF4G3O43432 1585 aaKnown RBP14.61□□□□□ -0.07
USP53-207ENST00000510852 ERICH3Q5RHP9 1530 aa14.59□□□□□ -0.07
USP53-207ENST00000510852 GRIN2BQ13224 1484 aa14.59□□□□□ -0.07
USP53-207ENST00000510852 PRXQ9BXM0 1461 aa14.58□□□□□ -0.08
USP53-207ENST00000510852 BRD2P25440 801 aaKnown RBP14.57□□□□□ -0.08
USP53-207ENST00000510852 CARMIL1Q5VZK9 1371 aa14.57□□□□□ -0.08
USP53-207ENST00000510852 PBRM1Q86U86 1689 aa14.56□□□□□ -0.08
USP53-207ENST00000510852 KIF21BO75037 1637 aa14.54□□□□□ -0.08
USP53-207ENST00000510852 RAPGEF2Q9Y4G8 1499 aa14.53□□□□□ -0.08
USP53-207ENST00000510852 SNAPC4Q5SXM2 1469 aa14.53□□□□□ -0.08
USP53-207ENST00000510852 CUL7Q14999 1698 aa14.52□□□□□ -0.08
USP53-207ENST00000510852 NPM3O75607 178 aaKnown RBP14.52□□□□□ -0.09
USP53-207ENST00000510852 GOLGA3Q08378 1498 aa14.52□□□□□ -0.09
USP53-207ENST00000510852 FHAD1B1AJZ9 1412 aa14.51□□□□□ -0.09
USP53-207ENST00000510852 MAGI1Q96QZ7 1491 aaPredicted RBP14.5□□□□□ -0.09
USP53-207ENST00000510852 ADAMTS12P58397 1594 aa14.49□□□□□ -0.09
USP53-207ENST00000510852 TAF7LQ5H9L4 462 aa14.47□□□□□ -0.09
USP53-207ENST00000510852 SYNJ2O15056 1496 aa14.45□□□□□ -0.1
USP53-207ENST00000510852 CHMP7Q8WUX9 453 aaPredicted RBP14.44□□□□□ -0.1
USP53-207ENST00000510852 HSP90B1P14625 803 aaKnown RBP14.43□□□□□ -0.1
USP53-207ENST00000510852 TNIKQ9UKE5 1360 aa14.43□□□□□ -0.1
USP53-207ENST00000510852 NEFLP07196 543 aa14.42□□□□□ -0.1
USP53-207ENST00000510852 GRIN2AQ12879 1464 aa14.41□□□□□ -0.1
USP53-207ENST00000510852 CCDC9Q9Y3X0 531 aaKnown RBP14.4□□□□□ -0.1
USP53-207ENST00000510852 HMGB1P09429 215 aaKnown RBP14.39□□□□□ -0.11
USP53-207ENST00000510852 NBR1Q14596 966 aa14.33□□□□□ -0.12
USP53-207ENST00000510852 PKNOX2Q96KN3 472 aa14.33□□□□□ -0.12
USP53-207ENST00000510852 NUP160Q12769 1436 aa14.32□□□□□ -0.12
USP53-207ENST00000510852 CEP162Q5TB80 1403 aa14.32□□□□□ -0.12
USP53-207ENST00000510852 CHD1O14646 1710 aa14.32□□□□□ -0.12
USP53-207ENST00000510852 CEP170Q5SW79 1584 aa14.32□□□□□ -0.12
USP53-207ENST00000510852 CTTNBP2Q8WZ74 1663 aa14.3□□□□□ -0.12
USP53-207ENST00000510852 KIAA0586Q9BVV6 1533 aa14.3□□□□□ -0.12
USP53-207ENST00000510852 CFAP44Q96MT7 982 aa14.29□□□□□ -0.12
USP53-207ENST00000510852 CLIP1P30622 1438 aa14.28□□□□□ -0.12
USP53-207ENST00000510852 IQGAP2Q13576 1575 aa14.27□□□□□ -0.13
USP53-207ENST00000510852 BCL11BQ9C0K0 894 aaPredicted RBP14.26□□□□□ -0.13
USP53-207ENST00000510852 PUS7Q96PZ0 661 aaKnown RBP14.25□□□□□ -0.13
USP53-207ENST00000510852 PAXIP1Q6ZW49 1069 aaPredicted RBP14.23□□□□□ -0.13
USP53-207ENST00000510852 OSCARQ8IYS5 282 aa14.22□□□□□ -0.13
USP53-207ENST00000510852 JPH4Q96JJ6 628 aa14.22□□□□□ -0.13
USP53-207ENST00000510852 ARHGAP35Q9NRY4 1499 aa14.22□□□□□ -0.13
USP53-207ENST00000510852 UGGT2Q9NYU1 1516 aa14.21□□□□□ -0.14
USP53-207ENST00000510852 TSHZ2Q9NRE2 1034 aa14.2□□□□□ -0.14
USP53-207ENST00000510852 CLASP1Q7Z460 1538 aa14.2□□□□□ -0.14
USP53-207ENST00000510852 P3H3Q8IVL6 736 aa14.2□□□□□ -0.14
USP53-207ENST00000510852 EFCAB5A4FU69 1503 aa14.19□□□□□ -0.14
USP53-207ENST00000510852 ARAP1Q96P48 1450 aa14.18□□□□□ -0.14
USP53-207ENST00000510852 NECTIN2Q92692 538 aa14.17□□□□□ -0.14
USP53-207ENST00000510852 SAMD9Q5K651 1589 aa14.17□□□□□ -0.14
USP53-207ENST00000510852 DISP1Q96F81 1524 aa14.16□□□□□ -0.14
USP53-207ENST00000510852 FHOD3Q2V2M9 1422 aa14.16□□□□□ -0.14
USP53-207ENST00000510852 ARID3AQ99856 593 aa14.15□□□□□ -0.14
USP53-207ENST00000510852 POLR3GLQ9BT43 218 aa14.15□□□□□ -0.14
USP53-207ENST00000510852 PRG4Q92954 1404 aaPredicted RBP14.14□□□□□ -0.15
USP53-207ENST00000510852 SHROOM2Q13796 1616 aa14.14□□□□□ -0.15
USP53-207ENST00000510852 TRHP20396 242 aaPredicted RBP14.13□□□□□ -0.15
USP53-207ENST00000510852 CARMIL2Q6F5E8 1435 aa14.13□□□□□ -0.15
USP53-207ENST00000510852 FGD1P98174 961 aa14.13□□□□□ -0.15
USP53-207ENST00000510852 KIAA0556O60303 1618 aa14.13□□□□□ -0.15
USP53-207ENST00000510852 ZBTB7CA1YPR0 619 aa14.12□□□□□ -0.15
USP53-207ENST00000510852 VPS8Q8N3P4 1428 aa14.11□□□□□ -0.15
USP53-207ENST00000510852 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.08□□□□□ -0.16
USP53-207ENST00000510852 ERCC6L2Q5T890 1561 aa14.08□□□□□ -0.16
USP53-207ENST00000510852 FMN1Q68DA7 1419 aa14.07□□□□□ -0.16
USP53-207ENST00000510852 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms