RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 NISCHQ9Y2I1 1504 aa20.8■□□□□ 0.92
USP53-207ENST00000510852 SLC24A1O60721 1099 aa19.61■□□□□ 0.73
USP53-207ENST00000510852 CCDC180Q9P1Z9 1646 aa18.23■□□□□ 0.51
USP53-207ENST00000510852 EHMT2Q96KQ7 1210 aa17.94■□□□□ 0.46
USP53-207ENST00000510852 DAXXQ9UER7 740 aaPredicted RBP17.88■□□□□ 0.45
USP53-207ENST00000510852 CHIC1Q5VXU3 224 aa17.87■□□□□ 0.45
USP53-207ENST00000510852 PLPPR3Q6T4P5 718 aa17.63■□□□□ 0.41
USP53-207ENST00000510852 RTN4Q9NQC3 1192 aaKnown RBP17.52■□□□□ 0.4
USP53-207ENST00000510852 ABCC9O60706 1549 aa17.52■□□□□ 0.39
USP53-207ENST00000510852 NCBP3Q53F19 620 aaKnown RBP17.46■□□□□ 0.39
USP53-207ENST00000510852 ZCCHC6Q5VYS8 1495 aaKnown RBP17.41■□□□□ 0.38
USP53-207ENST00000510852 TTBK1Q5TCY1 1321 aaPredicted RBP17.37■□□□□ 0.37
USP53-207ENST00000510852 MYT1Q01538 1121 aa17.35■□□□□ 0.37
USP53-207ENST00000510852 DCAF8L2P0C7V8 631 aa17.28■□□□□ 0.36
USP53-207ENST00000510852 APLP2Q06481 763 aa17.21■□□□□ 0.35
USP53-207ENST00000510852 DCAF1Q9Y4B6 1507 aa17.2■□□□□ 0.34
USP53-207ENST00000510852 PRKCSHP14314 528 aaPredicted RBP17.17■□□□□ 0.34
USP53-207ENST00000510852 PELP1Q8IZL8 1130 aaKnown RBP17.13■□□□□ 0.33
USP53-207ENST00000510852 MYO15BQ96JP2 1530 aa17.1■□□□□ 0.33
USP53-207ENST00000510852 NACADO15069 1562 aa17.07■□□□□ 0.32
USP53-207ENST00000510852 AMER1Q5JTC6 1135 aaPredicted RBP17.04■□□□□ 0.32
USP53-207ENST00000510852 RB1CC1Q8TDY2 1594 aa16.98■□□□□ 0.31
USP53-207ENST00000510852 ERICH6Q7L0X2 663 aa16.97■□□□□ 0.31
USP53-207ENST00000510852 KCNA4P22459 653 aa16.81■□□□□ 0.28
USP53-207ENST00000510852 ARXQ96QS3 562 aa16.79■□□□□ 0.28
USP53-207ENST00000510852 SHROOM4Q9ULL8 1493 aa16.77■□□□□ 0.28
USP53-207ENST00000510852 SCRIBQ14160 1630 aa16.74■□□□□ 0.27
USP53-207ENST00000510852 CSRNP3Q8WYN3 585 aa16.66■□□□□ 0.26
USP53-207ENST00000510852 TIMELESSQ9UNS1 1208 aa16.64■□□□□ 0.25
USP53-207ENST00000510852 UNC13AQ9UPW8 1703 aa16.58■□□□□ 0.24
USP53-207ENST00000510852 AEBP2Q6ZN18 517 aaPredicted RBP16.5■□□□□ 0.23
USP53-207ENST00000510852 PABPN1Q86U42 306 aaKnown RBP eCLIP16.48■□□□□ 0.23
USP53-207ENST00000510852 BICRAQ9NZM4 1560 aa16.47■□□□□ 0.23
USP53-207ENST00000510852 TULP1O00294 542 aaPredicted RBP16.36■□□□□ 0.21
USP53-207ENST00000510852 RANGAP1P46060 587 aaPredicted RBP16.34■□□□□ 0.21
USP53-207ENST00000510852 TAOK2Q9UL54 1235 aa16.3■□□□□ 0.2
USP53-207ENST00000510852 PHF23Q9BUL5 403 aaPredicted RBP16.24■□□□□ 0.19
USP53-207ENST00000510852 HOMEZQ8IX15 550 aa16.23■□□□□ 0.19
USP53-207ENST00000510852 CECR2Q9BXF3 1484 aa16.18■□□□□ 0.18
USP53-207ENST00000510852 KLHL34Q8N239 644 aa16.15■□□□□ 0.18
USP53-207ENST00000510852 EIF5BO60841 1220 aaKnown RBP16.15■□□□□ 0.18
USP53-207ENST00000510852 BAZ1AQ9NRL2 1556 aaPredicted RBP16.07■□□□□ 0.16
USP53-207ENST00000510852 MROH2BQ7Z745 1585 aa16.05■□□□□ 0.16
USP53-207ENST00000510852 RSF1Q96T23 1441 aaPredicted RBP16.04■□□□□ 0.16
USP53-207ENST00000510852 SMARCA4P51532 1647 aa16.03■□□□□ 0.16
USP53-207ENST00000510852 BCANQ96GW7 911 aa16.02■□□□□ 0.16
USP53-207ENST00000510852 TPRNQ4KMQ1 711 aa16.02■□□□□ 0.15
USP53-207ENST00000510852 SUPT5HO00267 1087 aaKnown RBP16.01■□□□□ 0.15
USP53-207ENST00000510852 EIF4G1Q04637 1599 aaKnown RBP16■□□□□ 0.15
USP53-207ENST00000510852 PODXL2Q9NZ53 605 aa15.97■□□□□ 0.15
USP53-207ENST00000510852 WIZO95785 1651 aa15.88■□□□□ 0.13
USP53-207ENST00000510852 ATAD2BQ9ULI0 1458 aa15.86■□□□□ 0.13
USP53-207ENST00000510852 PEG3Q9GZU2 1588 aa15.85■□□□□ 0.13
USP53-207ENST00000510852 CC2D2AQ9P2K1 1620 aa15.83■□□□□ 0.13
USP53-207ENST00000510852 SMARCA2P51531 1590 aa15.83■□□□□ 0.12
USP53-207ENST00000510852 GTF3C3Q9Y5Q9 886 aa15.8■□□□□ 0.12
USP53-207ENST00000510852 NCAPD3P42695 1498 aa15.78■□□□□ 0.12
USP53-207ENST00000510852 BAZ1BQ9UIG0 1483 aaKnown RBP15.75■□□□□ 0.11
USP53-207ENST00000510852 TOP2AP11388 1531 aaKnown RBP15.73■□□□□ 0.11
USP53-207ENST00000510852 DNAJC5BQ9UF47 199 aa15.72■□□□□ 0.11
USP53-207ENST00000510852 PLCB2Q00722 1185 aa15.72■□□□□ 0.11
USP53-207ENST00000510852 HMGXB3Q12766 1538 aa15.71■□□□□ 0.11
USP53-207ENST00000510852 PLEKHG5O94827 1062 aa15.64■□□□□ 0.09
USP53-207ENST00000510852 SLC4A1APQ9BWU0 796 aaKnown RBP15.64■□□□□ 0.09
USP53-207ENST00000510852 NPM2Q86SE8 214 aaKnown RBP15.62■□□□□ 0.09
USP53-207ENST00000510852 CCDC88BA6NC98 1476 aa15.58■□□□□ 0.08
USP53-207ENST00000510852 HAP1P54257 671 aaPredicted RBP15.54■□□□□ 0.08
USP53-207ENST00000510852 TMEM132AQ24JP5 1023 aa15.44■□□□□ 0.06
USP53-207ENST00000510852 C14orf37Q86TY3 774 aa15.44■□□□□ 0.06
USP53-207ENST00000510852 CADPSQ9ULU8 1353 aa15.36■□□□□ 0.05
USP53-207ENST00000510852 FBXO3Q9UK99 471 aa15.35■□□□□ 0.05
USP53-207ENST00000510852 CFTRP13569 1480 aa15.34■□□□□ 0.05
USP53-207ENST00000510852 NESP48681 1621 aa15.29■□□□□ 0.04
USP53-207ENST00000510852 TRIM26Q12899 539 aaPredicted RBP15.27■□□□□ 0.04
USP53-207ENST00000510852 LAMC3Q9Y6N6 1575 aa15.26■□□□□ 0.03
USP53-207ENST00000510852 BCL11AQ9H165 835 aa15.24■□□□□ 0.03
USP53-207ENST00000510852 LOC105371045A0A1W2PR82 267 aa15.19■□□□□ 0.02
USP53-207ENST00000510852 PRDM2Q13029 1718 aa15.18■□□□□ 0.02
USP53-207ENST00000510852 PDS5BQ9NTI5 1447 aa15.18■□□□□ 0.02
USP53-207ENST00000510852 FANCD2Q9BXW9 1451 aa15.17■□□□□ 0.02
USP53-207ENST00000510852 VSIG10Q8N0Z9 540 aa15.16■□□□□ 0.02
USP53-207ENST00000510852 ABCC8Q09428 1581 aa15.14■□□□□ 0.01
USP53-207ENST00000510852 ZBTB22O15209 634 aa15.13■□□□□ 0.01
USP53-207ENST00000510852 WRNQ14191 1432 aaPredicted RBP eCLIP15.1■□□□□ 0.01
USP53-207ENST00000510852 CEP164Q9UPV0 1460 aa15.1■□□□□ 0.01
USP53-207ENST00000510852 TRIM41Q8WV44 630 aa15.08■□□□□ 0.01
USP53-207ENST00000510852 HRCP23327 699 aa15.08■□□□□ 0
USP53-207ENST00000510852 KIF21AQ7Z4S6 1674 aa15.07■□□□□ 0
USP53-207ENST00000510852 KDM2AQ9Y2K7 1162 aa15.06■□□□□ 0
USP53-207ENST00000510852 ERCC6Q03468 1493 aa15.05■□□□□ 0
USP53-207ENST00000510852 UBTFP17480 764 aaKnown RBP15.03■□□□□ -0
USP53-207ENST00000510852 CUX1P39880 1505 aa15.03■□□□□ -0
USP53-207ENST00000510852 SYNJ1O43426 1573 aa15.03■□□□□ -0
USP53-207ENST00000510852 URB2Q14146 1524 aaKnown RBP14.99□□□□□ -0.01
USP53-207ENST00000510852 TOP2BQ02880 1626 aa14.99□□□□□ -0.01
USP53-207ENST00000510852 MRC2Q9UBG0 1479 aa14.99□□□□□ -0.01
USP53-207ENST00000510852 PDIA4P13667 645 aaKnown RBP14.98□□□□□ -0.01
USP53-207ENST00000510852 DNMBPQ6XZF7 1577 aa14.97□□□□□ -0.01
USP53-207ENST00000510852 TOPBP1Q92547 1522 aa14.97□□□□□ -0.01
USP53-207ENST00000510852 BIVM-ERCC5R4GMW8 1640 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms