RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 CADPSQ9ULU8 1353 aa24.21■■□□□ 1.47
SQSTM1-211ENST00000506690 CCER2I3L3R5 266 aa24.2■■□□□ 1.46
SQSTM1-211ENST00000506690 PRDM2Q13029 1718 aa24.18■■□□□ 1.46
SQSTM1-211ENST00000506690 ARHGAP35Q9NRY4 1499 aa24.17■■□□□ 1.46
SQSTM1-211ENST00000506690 ITGAEP38570 1179 aa24.16■■□□□ 1.46
SQSTM1-211ENST00000506690 SETD5Q9C0A6 1442 aa24.15■■□□□ 1.46
SQSTM1-211ENST00000506690 MSH5O43196 834 aa24.14■■□□□ 1.45
SQSTM1-211ENST00000506690 TIMELESSQ9UNS1 1208 aa24.11■■□□□ 1.45
SQSTM1-211ENST00000506690 MAP3K1Q13233 1512 aa24.1■■□□□ 1.45
SQSTM1-211ENST00000506690 TRIM52Q96A61 297 aa24.1■■□□□ 1.45
SQSTM1-211ENST00000506690 CUX1P39880 1505 aa24.08■■□□□ 1.45
SQSTM1-211ENST00000506690 TIAM1Q13009 1591 aa24.07■■□□□ 1.44
SQSTM1-211ENST00000506690 FANCIQ9NVI1 1328 aa24.07■■□□□ 1.44
SQSTM1-211ENST00000506690 SIN3AQ96ST3 1273 aa24.06■■□□□ 1.44
SQSTM1-211ENST00000506690 KIF27Q86VH2 1401 aa24.06■■□□□ 1.44
SQSTM1-211ENST00000506690 ANP32CO43423 234 aa24.05■■□□□ 1.44
SQSTM1-211ENST00000506690 LRRC9Q6ZRR7 1453 aa23.96■■□□□ 1.43
SQSTM1-211ENST00000506690 DNAJC5BQ9UF47 199 aa23.95■■□□□ 1.43
SQSTM1-211ENST00000506690 PHLDB1Q86UU1 1377 aa23.94■■□□□ 1.42
SQSTM1-211ENST00000506690 FANCD2Q9BXW9 1451 aa23.94■■□□□ 1.42
SQSTM1-211ENST00000506690 HIRIP3Q9BW71 556 aaPredicted RBP23.93■■□□□ 1.42
SQSTM1-211ENST00000506690 NESP48681 1621 aa23.93■■□□□ 1.42
SQSTM1-211ENST00000506690 LAMC3Q9Y6N6 1575 aa23.92■■□□□ 1.42
SQSTM1-211ENST00000506690 CDK11AQ9UQ88 783 aaPredicted RBP23.89■■□□□ 1.42
SQSTM1-211ENST00000506690 CFAP43Q8NDM7 1665 aa23.85■■□□□ 1.41
SQSTM1-211ENST00000506690 FAM50AQ14320 339 aaKnown RBP23.83■■□□□ 1.41
SQSTM1-211ENST00000506690 ERICH6Q7L0X2 663 aa23.82■■□□□ 1.4
SQSTM1-211ENST00000506690 MYT1LQ9UL68 1186 aa23.82■■□□□ 1.4
SQSTM1-211ENST00000506690 ERICH6BQ5W0A0 696 aa23.81■■□□□ 1.4
SQSTM1-211ENST00000506690 FGD5Q6ZNL6 1462 aa23.78■■□□□ 1.4
SQSTM1-211ENST00000506690 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.77■■□□□ 1.4
SQSTM1-211ENST00000506690 HNRNPUQ00839 825 aaKnown RBP eCLIP23.76■■□□□ 1.39
SQSTM1-211ENST00000506690 PDS5BQ9NTI5 1447 aa23.76■■□□□ 1.39
SQSTM1-211ENST00000506690 FHAD1B1AJZ9 1412 aa23.75■■□□□ 1.39
SQSTM1-211ENST00000506690 TONSLQ96HA7 1378 aa23.75■■□□□ 1.39
SQSTM1-211ENST00000506690 IGF1RP08069 1367 aa23.74■■□□□ 1.39
SQSTM1-211ENST00000506690 DNMBPQ6XZF7 1577 aa23.74■■□□□ 1.39
SQSTM1-211ENST00000506690 IRX6P78412 446 aaPredicted RBP23.73■■□□□ 1.39
SQSTM1-211ENST00000506690 PCF11O94913 1555 aaKnown RBP23.72■■□□□ 1.39
SQSTM1-211ENST00000506690 TOPBP1Q92547 1522 aa23.7■■□□□ 1.38
SQSTM1-211ENST00000506690 PPP4R2Q9NY27 417 aa23.7■■□□□ 1.38
SQSTM1-211ENST00000506690 KDM5BQ9UGL1 1544 aa23.64■■□□□ 1.38
SQSTM1-211ENST00000506690 CCDC18Q5T9S5 1454 aa23.63■■□□□ 1.37
SQSTM1-211ENST00000506690 CARMIL1Q5VZK9 1371 aa23.63■■□□□ 1.37
SQSTM1-211ENST00000506690 UACAQ9BZF9 1416 aa23.63■■□□□ 1.37
SQSTM1-211ENST00000506690 DEKP35659 375 aaKnown RBP23.62■■□□□ 1.37
SQSTM1-211ENST00000506690 URB2Q14146 1524 aaKnown RBP23.62■■□□□ 1.37
SQSTM1-211ENST00000506690 KIF21AQ7Z4S6 1674 aa23.61■■□□□ 1.37
SQSTM1-211ENST00000506690 POLA1P09884 1462 aaPredicted RBP23.61■■□□□ 1.37
SQSTM1-211ENST00000506690 RAD54L2Q9Y4B4 1467 aa23.6■■□□□ 1.37
SQSTM1-211ENST00000506690 FYCO1Q9BQS8 1478 aa23.59■■□□□ 1.37
SQSTM1-211ENST00000506690 HFM1A2PYH4 1435 aa23.58■■□□□ 1.37
SQSTM1-211ENST00000506690 PTPN23Q9H3S7 1636 aa23.56■■□□□ 1.36
SQSTM1-211ENST00000506690 FGD6Q6ZV73 1430 aa23.56■■□□□ 1.36
SQSTM1-211ENST00000506690 WASHC2AQ641Q2 1341 aa23.56■■□□□ 1.36
SQSTM1-211ENST00000506690 NCOA2Q15596 1464 aa23.54■■□□□ 1.36
SQSTM1-211ENST00000506690 ABCA10Q8WWZ4 1543 aa23.54■■□□□ 1.36
SQSTM1-211ENST00000506690 AQRO60306 1485 aaKnown RBP eCLIP23.53■■□□□ 1.36
SQSTM1-211ENST00000506690 CASKIN1Q8WXD9 1431 aa23.53■■□□□ 1.36
SQSTM1-211ENST00000506690 PTPRKQ15262 1439 aa23.51■■□□□ 1.35
SQSTM1-211ENST00000506690 B4GALNT3Q6L9W6 998 aa23.49■■□□□ 1.35
SQSTM1-211ENST00000506690 NOP58Q9Y2X3 529 aaKnown RBP23.49■■□□□ 1.35
SQSTM1-211ENST00000506690 FHOD3Q2V2M9 1422 aa23.48■■□□□ 1.35
SQSTM1-211ENST00000506690 CNTLNQ9NXG0 1405 aa23.48■■□□□ 1.35
SQSTM1-211ENST00000506690 EFCAB5A4FU69 1503 aa23.48■■□□□ 1.35
SQSTM1-211ENST00000506690 HSPA5P11021 654 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-211ENST00000506690 P3H3Q8IVL6 736 aa23.47■■□□□ 1.35
SQSTM1-211ENST00000506690 NAIPQ13075 1403 aa23.47■■□□□ 1.35
SQSTM1-211ENST00000506690 CCDC184Q52MB2 194 aa23.47■■□□□ 1.35
SQSTM1-211ENST00000506690 ATP1B4Q9UN42 357 aaPredicted RBP23.47■■□□□ 1.35
SQSTM1-211ENST00000506690 ZBED9Q6R2W3 1325 aa23.47■■□□□ 1.35
SQSTM1-211ENST00000506690 MRC2Q9UBG0 1479 aa23.42■■□□□ 1.34
SQSTM1-211ENST00000506690 PRKRIP1Q9H875 184 aaPredicted RBP23.4■■□□□ 1.34
SQSTM1-211ENST00000506690 PAK3O75914 559 aaPredicted RBP23.39■■□□□ 1.34
SQSTM1-211ENST00000506690 FMN1Q68DA7 1419 aa23.39■■□□□ 1.33
SQSTM1-211ENST00000506690 EIF4G2P78344 907 aaKnown RBP eCLIP23.38■■□□□ 1.33
SQSTM1-211ENST00000506690 TDRD9Q8NDG6 1382 aaKnown RBP23.37■■□□□ 1.33
SQSTM1-211ENST00000506690 PRKCSHP14314 528 aaPredicted RBP23.37■■□□□ 1.33
SQSTM1-211ENST00000506690 NCOA1Q15788 1441 aa23.35■■□□□ 1.33
SQSTM1-211ENST00000506690 SNAPC4Q5SXM2 1469 aa23.35■■□□□ 1.33
SQSTM1-211ENST00000506690 FAM9BQ8IZU0 186 aa23.35■■□□□ 1.33
SQSTM1-211ENST00000506690 NBR1Q14596 966 aa23.34■■□□□ 1.33
SQSTM1-211ENST00000506690 MRS2Q9HD23 443 aa23.33■■□□□ 1.33
SQSTM1-211ENST00000506690 DENND4BO75064 1496 aaPredicted RBP23.32■■□□□ 1.32
SQSTM1-211ENST00000506690 CCDC7Q96M83 1385 aa23.32■■□□□ 1.32
SQSTM1-211ENST00000506690 HECW1Q76N89 1606 aa23.32■■□□□ 1.32
SQSTM1-211ENST00000506690 MYOM3Q5VTT5 1437 aa23.31■■□□□ 1.32
SQSTM1-211ENST00000506690 MTUS2Q5JR59 1369 aa23.31■■□□□ 1.32
SQSTM1-211ENST00000506690 TARBP1Q13395 1621 aaKnown RBP23.31■■□□□ 1.32
SQSTM1-211ENST00000506690 ABCA5Q8WWZ7 1642 aa23.31■■□□□ 1.32
SQSTM1-211ENST00000506690 C11orf95C9JLR9 678 aaPredicted RBP23.3■■□□□ 1.32
SQSTM1-211ENST00000506690 CTTNBP2Q8WZ74 1663 aa23.3■■□□□ 1.32
SQSTM1-211ENST00000506690 CUL7Q14999 1698 aa23.29■■□□□ 1.32
SQSTM1-211ENST00000506690 ERCC6Q03468 1493 aa23.28■■□□□ 1.32
SQSTM1-211ENST00000506690 GAPVD1Q14C86 1478 aa23.28■■□□□ 1.32
SQSTM1-211ENST00000506690 WDR62O43379 1518 aa23.28■■□□□ 1.32
SQSTM1-211ENST00000506690 SMG6Q86US8 1419 aaKnown RBP23.28■■□□□ 1.32
SQSTM1-211ENST00000506690 IPO9Q96P70 1041 aaKnown RBP23.28■■□□□ 1.32
SQSTM1-211ENST00000506690 LRRIQ1Q96JM4 1722 aa23.27■■□□□ 1.32
SQSTM1-211ENST00000506690 GCC2Q8IWJ2 1684 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms