RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 NISCHQ9Y2I1 1504 aa33.31■■■□□ 2.92
SQSTM1-211ENST00000506690 CCDC180Q9P1Z9 1646 aa28.88■■■□□ 2.21
SQSTM1-211ENST00000506690 HRCP23327 699 aa28.88■■■□□ 2.21
SQSTM1-211ENST00000506690 SHROOM4Q9ULL8 1493 aa28.84■■■□□ 2.21
SQSTM1-211ENST00000506690 SUPT5HO00267 1087 aaKnown RBP28.65■■■□□ 2.18
SQSTM1-211ENST00000506690 MYO15BQ96JP2 1530 aa28.47■■■□□ 2.15
SQSTM1-211ENST00000506690 CHIC1Q5VXU3 224 aa28.31■■■□□ 2.12
SQSTM1-211ENST00000506690 PCGF6Q9BYE7 350 aa28.25■■■□□ 2.11
SQSTM1-211ENST00000506690 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
SQSTM1-211ENST00000506690 PPARGC1BQ86YN6 1023 aaKnown RBP28.11■■■□□ 2.09
SQSTM1-211ENST00000506690 DCAF1Q9Y4B6 1507 aa27.96■■■□□ 2.07
SQSTM1-211ENST00000506690 DCAF8L2P0C7V8 631 aa27.79■■■□□ 2.04
SQSTM1-211ENST00000506690 PELP1Q8IZL8 1130 aaKnown RBP27.6■■■□□ 2.01
SQSTM1-211ENST00000506690 TRIM26Q12899 539 aaPredicted RBP27.54■■■□□ 2
SQSTM1-211ENST00000506690 LOC105371045A0A1W2PR82 267 aa27.5■■□□□ 1.99
SQSTM1-211ENST00000506690 ZEB1P37275 1124 aaPredicted RBP27.3■■□□□ 1.96
SQSTM1-211ENST00000506690 ABCC9O60706 1549 aa27.17■■□□□ 1.94
SQSTM1-211ENST00000506690 SCAF1Q9H7N4 1312 aaKnown RBP27.13■■□□□ 1.93
SQSTM1-211ENST00000506690 NACADO15069 1562 aa26.87■■□□□ 1.89
SQSTM1-211ENST00000506690 SCRIBQ14160 1630 aa26.67■■□□□ 1.86
SQSTM1-211ENST00000506690 TRIM41Q8WV44 630 aa26.63■■□□□ 1.85
SQSTM1-211ENST00000506690 RB1CC1Q8TDY2 1594 aa26.59■■□□□ 1.85
SQSTM1-211ENST00000506690 ACIN1Q9UKV3 1341 aaKnown RBP26.58■■□□□ 1.85
SQSTM1-211ENST00000506690 RSF1Q96T23 1441 aaPredicted RBP26.57■■□□□ 1.84
SQSTM1-211ENST00000506690 MYT1Q01538 1121 aa26.49■■□□□ 1.83
SQSTM1-211ENST00000506690 NEUROD1Q13562 356 aa26.46■■□□□ 1.83
SQSTM1-211ENST00000506690 FAM9AQ8IZU1 332 aaPredicted RBP26.44■■□□□ 1.82
SQSTM1-211ENST00000506690 GTF3C3Q9Y5Q9 886 aa26.28■■□□□ 1.8
SQSTM1-211ENST00000506690 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.25■■□□□ 1.79
SQSTM1-211ENST00000506690 CENPBP07199 599 aaPredicted RBP26.25■■□□□ 1.79
SQSTM1-211ENST00000506690 CCER1Q8TC90 406 aaPredicted RBP26.22■■□□□ 1.79
SQSTM1-211ENST00000506690 DIEXFQ68CQ4 756 aaKnown RBP26.2■■□□□ 1.79
SQSTM1-211ENST00000506690 EHMT2Q96KQ7 1210 aa26.17■■□□□ 1.78
SQSTM1-211ENST00000506690 UNC13AQ9UPW8 1703 aa26.06■■□□□ 1.76
SQSTM1-211ENST00000506690 CECR2Q9BXF3 1484 aa25.97■■□□□ 1.75
SQSTM1-211ENST00000506690 WRNQ14191 1432 aaPredicted RBP eCLIP25.9■■□□□ 1.74
SQSTM1-211ENST00000506690 MROH2BQ7Z745 1585 aa25.84■■□□□ 1.73
SQSTM1-211ENST00000506690 EIF4G1Q04637 1599 aaKnown RBP25.82■■□□□ 1.72
SQSTM1-211ENST00000506690 ZNF316A6NFI3 1004 aaPredicted RBP25.79■■□□□ 1.72
SQSTM1-211ENST00000506690 BICRAQ9NZM4 1560 aa25.79■■□□□ 1.72
SQSTM1-211ENST00000506690 WIZO95785 1651 aa25.76■■□□□ 1.71
SQSTM1-211ENST00000506690 PABPN1Q86U42 306 aaKnown RBP eCLIP25.71■■□□□ 1.71
SQSTM1-211ENST00000506690 BAZ1AQ9NRL2 1556 aaPredicted RBP25.68■■□□□ 1.7
SQSTM1-211ENST00000506690 CEP162Q5TB80 1403 aa25.66■■□□□ 1.7
SQSTM1-211ENST00000506690 YTHDC1Q96MU7 727 aaKnown RBP25.59■■□□□ 1.69
SQSTM1-211ENST00000506690 TNIKQ9UKE5 1360 aa25.56■■□□□ 1.68
SQSTM1-211ENST00000506690 TTBK1Q5TCY1 1321 aaPredicted RBP25.56■■□□□ 1.68
SQSTM1-211ENST00000506690 MIER1Q8N108 512 aa25.54■■□□□ 1.68
SQSTM1-211ENST00000506690 SMARCA4P51532 1647 aa25.53■■□□□ 1.68
SQSTM1-211ENST00000506690 CCDC88BA6NC98 1476 aa25.51■■□□□ 1.68
SQSTM1-211ENST00000506690 ABCC8Q09428 1581 aa25.47■■□□□ 1.67
SQSTM1-211ENST00000506690 SOGA1O94964 1423 aa25.39■■□□□ 1.65
SQSTM1-211ENST00000506690 EEA1Q15075 1411 aa25.38■■□□□ 1.65
SQSTM1-211ENST00000506690 TOP2AP11388 1531 aaKnown RBP25.34■■□□□ 1.65
SQSTM1-211ENST00000506690 CSRNP3Q8WYN3 585 aa25.29■■□□□ 1.64
SQSTM1-211ENST00000506690 CLSPNQ9HAW4 1339 aa25.26■■□□□ 1.63
SQSTM1-211ENST00000506690 GOLGA3Q08378 1498 aa25.26■■□□□ 1.63
SQSTM1-211ENST00000506690 SMARCA2P51531 1590 aa25.25■■□□□ 1.63
SQSTM1-211ENST00000506690 RUSC2Q8N2Y8 1516 aa25.23■■□□□ 1.63
SQSTM1-211ENST00000506690 UBTFP17480 764 aaKnown RBP25.23■■□□□ 1.63
SQSTM1-211ENST00000506690 PEG3Q9GZU2 1588 aa25.2■■□□□ 1.62
SQSTM1-211ENST00000506690 HNRNPUL2Q1KMD3 747 aaKnown RBP25.17■■□□□ 1.62
SQSTM1-211ENST00000506690 SUPT16HQ9Y5B9 1047 aaKnown RBP25.12■■□□□ 1.61
SQSTM1-211ENST00000506690 ATAD2BQ9ULI0 1458 aa25.07■■□□□ 1.6
SQSTM1-211ENST00000506690 KIF21BO75037 1637 aa25.04■■□□□ 1.6
SQSTM1-211ENST00000506690 CEP164Q9UPV0 1460 aa25.02■■□□□ 1.6
SQSTM1-211ENST00000506690 VPS8Q8N3P4 1428 aa25.01■■□□□ 1.59
SQSTM1-211ENST00000506690 CLIP1P30622 1438 aa24.99■■□□□ 1.59
SQSTM1-211ENST00000506690 TSHZ2Q9NRE2 1034 aa24.96■■□□□ 1.59
SQSTM1-211ENST00000506690 BAZ1BQ9UIG0 1483 aaKnown RBP24.94■■□□□ 1.58
SQSTM1-211ENST00000506690 ANP32EQ9BTT0 268 aa24.93■■□□□ 1.58
SQSTM1-211ENST00000506690 DHX57Q6P158 1386 aaKnown RBP24.88■■□□□ 1.57
SQSTM1-211ENST00000506690 APLP2Q06481 763 aa24.84■■□□□ 1.57
SQSTM1-211ENST00000506690 NCAPD3P42695 1498 aa24.82■■□□□ 1.56
SQSTM1-211ENST00000506690 SYNJ1O43426 1573 aa24.8■■□□□ 1.56
SQSTM1-211ENST00000506690 HMGXB3Q12766 1538 aa24.78■■□□□ 1.56
SQSTM1-211ENST00000506690 RAPGEF2Q9Y4G8 1499 aa24.73■■□□□ 1.55
SQSTM1-211ENST00000506690 BCL11AQ9H165 835 aa24.66■■□□□ 1.54
SQSTM1-211ENST00000506690 CUX2O14529 1486 aa24.61■■□□□ 1.53
SQSTM1-211ENST00000506690 CC2D2AQ9P2K1 1620 aa24.58■■□□□ 1.53
SQSTM1-211ENST00000506690 RRBP1Q9P2E9 1410 aaKnown RBP24.58■■□□□ 1.53
SQSTM1-211ENST00000506690 KCNH8Q96L42 1107 aa24.53■■□□□ 1.52
SQSTM1-211ENST00000506690 ARAP1Q96P48 1450 aa24.52■■□□□ 1.52
SQSTM1-211ENST00000506690 KANK4Q5T7N3 995 aaPredicted RBP24.49■■□□□ 1.51
SQSTM1-211ENST00000506690 RANGAP1P46060 587 aaPredicted RBP24.49■■□□□ 1.51
SQSTM1-211ENST00000506690 ERICH3Q5RHP9 1530 aa24.48■■□□□ 1.51
SQSTM1-211ENST00000506690 FKBP8Q14318 412 aa24.44■■□□□ 1.5
SQSTM1-211ENST00000506690 BCANQ96GW7 911 aa24.44■■□□□ 1.5
SQSTM1-211ENST00000506690 TOP2BQ02880 1626 aa24.42■■□□□ 1.5
SQSTM1-211ENST00000506690 PRXQ9BXM0 1461 aa24.41■■□□□ 1.5
SQSTM1-211ENST00000506690 CCNB3Q8WWL7 1395 aa24.39■■□□□ 1.49
SQSTM1-211ENST00000506690 RBM19Q9Y4C8 960 aaKnown RBP24.38■■□□□ 1.49
SQSTM1-211ENST00000506690 MAPKBP1O60336 1514 aa24.38■■□□□ 1.49
SQSTM1-211ENST00000506690 CFTRP13569 1480 aa24.33■■□□□ 1.49
SQSTM1-211ENST00000506690 BIVM-ERCC5R4GMW8 1640 aa24.33■■□□□ 1.48
SQSTM1-211ENST00000506690 RAB3GAP2Q9H2M9 1393 aa24.29■■□□□ 1.48
SQSTM1-211ENST00000506690 NEFLP07196 543 aa24.26■■□□□ 1.47
SQSTM1-211ENST00000506690 WDR97A6NE52 1622 aa24.24■■□□□ 1.47
SQSTM1-211ENST00000506690 DDX10Q13206 875 aaKnown RBP24.24■■□□□ 1.47
SQSTM1-211ENST00000506690 PPP1R15AO75807 674 aaPredicted RBP24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms