RNA–Protein interactions for RNA: ENST00000505551.5

LETM1-203, Transcript of leucine zipper and EF-hand containing transmembrane protein 1, humanhuman

TSL 1 (best)

Gene LETM1, Length 2,710 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETM1-203ENST00000505551 KIF21BO75037 1637 aa18.89■□□□□ 0.61
LETM1-203ENST00000505551 CUX2O14529 1486 aa18.87■□□□□ 0.61
LETM1-203ENST00000505551 FANCD2Q9BXW9 1451 aa18.87■□□□□ 0.61
LETM1-203ENST00000505551 DHX57Q6P158 1386 aaKnown RBP18.84■□□□□ 0.61
LETM1-203ENST00000505551 KCNH8Q96L42 1107 aa18.82■□□□□ 0.6
LETM1-203ENST00000505551 FGD5Q6ZNL6 1462 aa18.82■□□□□ 0.6
LETM1-203ENST00000505551 PRXQ9BXM0 1461 aa18.81■□□□□ 0.6
LETM1-203ENST00000505551 NEFLP07196 543 aa18.8■□□□□ 0.6
LETM1-203ENST00000505551 IGF1RP08069 1367 aa18.79■□□□□ 0.6
LETM1-203ENST00000505551 RAD54L2Q9Y4B4 1467 aa18.78■□□□□ 0.6
LETM1-203ENST00000505551 PKNOX2Q96KN3 472 aa18.75■□□□□ 0.59
LETM1-203ENST00000505551 DEKP35659 375 aaKnown RBP18.75■□□□□ 0.59
LETM1-203ENST00000505551 NCBP3Q53F19 620 aaKnown RBP18.75■□□□□ 0.59
LETM1-203ENST00000505551 VPS8Q8N3P4 1428 aa18.75■□□□□ 0.59
LETM1-203ENST00000505551 P3H3Q8IVL6 736 aa18.74■□□□□ 0.59
LETM1-203ENST00000505551 ITGAEP38570 1179 aa18.73■□□□□ 0.59
LETM1-203ENST00000505551 KLHL34Q8N239 644 aa18.73■□□□□ 0.59
LETM1-203ENST00000505551 CARMIL1Q5VZK9 1371 aa18.71■□□□□ 0.59
LETM1-203ENST00000505551 PRDM2Q13029 1718 aa18.7■□□□□ 0.58
LETM1-203ENST00000505551 KANK4Q5T7N3 995 aaPredicted RBP18.69■□□□□ 0.58
LETM1-203ENST00000505551 SALL2Q9Y467 1007 aaPredicted RBP18.69■□□□□ 0.58
LETM1-203ENST00000505551 AEBP2Q6ZN18 517 aaPredicted RBP18.68■□□□□ 0.58
LETM1-203ENST00000505551 CCDC136Q96JN2 1154 aa18.68■□□□□ 0.58
LETM1-203ENST00000505551 ERICH3Q5RHP9 1530 aa18.67■□□□□ 0.58
LETM1-203ENST00000505551 ATP1B4Q9UN42 357 aaPredicted RBP18.66■□□□□ 0.58
LETM1-203ENST00000505551 TOPBP1Q92547 1522 aa18.66■□□□□ 0.58
LETM1-203ENST00000505551 ARAP1Q96P48 1450 aa18.65■□□□□ 0.58
LETM1-203ENST00000505551 TDRD9Q8NDG6 1382 aaKnown RBP18.65■□□□□ 0.58
LETM1-203ENST00000505551 POLA1P09884 1462 aaPredicted RBP18.65■□□□□ 0.58
LETM1-203ENST00000505551 ERICH6BQ5W0A0 696 aa18.64■□□□□ 0.57
LETM1-203ENST00000505551 URB2Q14146 1524 aaKnown RBP18.6■□□□□ 0.57
LETM1-203ENST00000505551 CDK11AQ9UQ88 783 aaPredicted RBP18.59■□□□□ 0.57
LETM1-203ENST00000505551 DNMBPQ6XZF7 1577 aa18.59■□□□□ 0.57
LETM1-203ENST00000505551 PDS5BQ9NTI5 1447 aa18.57■□□□□ 0.56
LETM1-203ENST00000505551 ARHGAP35Q9NRY4 1499 aa18.57■□□□□ 0.56
LETM1-203ENST00000505551 LAMC3Q9Y6N6 1575 aa18.54■□□□□ 0.56
LETM1-203ENST00000505551 CCER2I3L3R5 266 aa18.54■□□□□ 0.56
LETM1-203ENST00000505551 PLPPR3Q6T4P5 718 aa18.53■□□□□ 0.56
LETM1-203ENST00000505551 ABCA10Q8WWZ4 1543 aa18.5■□□□□ 0.55
LETM1-203ENST00000505551 TRIM52Q96A61 297 aa18.49■□□□□ 0.55
LETM1-203ENST00000505551 PPP1R15AO75807 674 aaPredicted RBP18.47■□□□□ 0.55
LETM1-203ENST00000505551 DDX10Q13206 875 aaKnown RBP18.46■□□□□ 0.55
LETM1-203ENST00000505551 KIF21AQ7Z4S6 1674 aa18.46■□□□□ 0.55
LETM1-203ENST00000505551 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.45■□□□□ 0.54
LETM1-203ENST00000505551 RRBP1Q9P2E9 1410 aaKnown RBP18.43■□□□□ 0.54
LETM1-203ENST00000505551 FHOD3Q2V2M9 1422 aa18.42■□□□□ 0.54
LETM1-203ENST00000505551 MAPKBP1O60336 1514 aa18.42■□□□□ 0.54
LETM1-203ENST00000505551 NOP58Q9Y2X3 529 aaKnown RBP18.41■□□□□ 0.54
LETM1-203ENST00000505551 GAPVD1Q14C86 1478 aa18.41■□□□□ 0.54
LETM1-203ENST00000505551 TIMELESSQ9UNS1 1208 aa18.4■□□□□ 0.54
LETM1-203ENST00000505551 AQRO60306 1485 aaKnown RBP eCLIP18.39■□□□□ 0.541e-6■■■■□ 23.5
LETM1-203ENST00000505551 RTN4Q9NQC3 1192 aaKnown RBP18.39■□□□□ 0.53
LETM1-203ENST00000505551 WDR97A6NE52 1622 aa18.38■□□□□ 0.53
LETM1-203ENST00000505551 NBR1Q14596 966 aa18.36■□□□□ 0.53
LETM1-203ENST00000505551 ANP32CO43423 234 aa18.35■□□□□ 0.53
LETM1-203ENST00000505551 PDIA4P13667 645 aaKnown RBP18.35■□□□□ 0.53
LETM1-203ENST00000505551 ARID3CA6NKF2 412 aa18.33■□□□□ 0.53
LETM1-203ENST00000505551 ARXQ96QS3 562 aa18.33■□□□□ 0.53
LETM1-203ENST00000505551 PPP4R2Q9NY27 417 aa18.33■□□□□ 0.52
LETM1-203ENST00000505551 FAM50AQ14320 339 aaKnown RBP18.32■□□□□ 0.52
LETM1-203ENST00000505551 IL27Q8NEV9 243 aa18.32■□□□□ 0.52
LETM1-203ENST00000505551 PAK3O75914 559 aaPredicted RBP18.31■□□□□ 0.52
LETM1-203ENST00000505551 PDE4CQ08493 712 aa18.31■□□□□ 0.52
LETM1-203ENST00000505551 IRX6P78412 446 aaPredicted RBP18.3■□□□□ 0.52
LETM1-203ENST00000505551 CCNB3Q8WWL7 1395 aa18.27■□□□□ 0.52
LETM1-203ENST00000505551 ERCC6Q03468 1493 aa18.26■□□□□ 0.51
LETM1-203ENST00000505551 MRC2Q9UBG0 1479 aa18.26■□□□□ 0.51
LETM1-203ENST00000505551 ZNF608Q9ULD9 1512 aaPredicted RBP18.26■□□□□ 0.51
LETM1-203ENST00000505551 FBLN2P98095 1184 aa18.25■□□□□ 0.51
LETM1-203ENST00000505551 RAB3GAP2Q9H2M9 1393 aa18.25■□□□□ 0.51
LETM1-203ENST00000505551 ABCA5Q8WWZ7 1642 aa18.25■□□□□ 0.51
LETM1-203ENST00000505551 FHAD1B1AJZ9 1412 aa18.24■□□□□ 0.51
LETM1-203ENST00000505551 CUL7Q14999 1698 aa18.24■□□□□ 0.51
LETM1-203ENST00000505551 TARBP1Q13395 1621 aaKnown RBP18.23■□□□□ 0.51
LETM1-203ENST00000505551 PHLDB1Q86UU1 1377 aa18.23■□□□□ 0.51
LETM1-203ENST00000505551 RTL5Q5HYW3 569 aaPredicted RBP18.23■□□□□ 0.51
LETM1-203ENST00000505551 PCF11O94913 1555 aaKnown RBP18.22■□□□□ 0.51
LETM1-203ENST00000505551 TIAM1Q13009 1591 aa18.21■□□□□ 0.51
LETM1-203ENST00000505551 LRRC9Q6ZRR7 1453 aa18.21■□□□□ 0.51
LETM1-203ENST00000505551 HNRNPUQ00839 825 aaKnown RBP eCLIP18.2■□□□□ 0.5
LETM1-203ENST00000505551 WASHC2AQ641Q2 1341 aa18.17■□□□□ 0.5
LETM1-203ENST00000505551 IPO9Q96P70 1041 aaKnown RBP18.15■□□□□ 0.5
LETM1-203ENST00000505551 CTTNBP2Q8WZ74 1663 aa18.14■□□□□ 0.49
LETM1-203ENST00000505551 CASKIN1Q8WXD9 1431 aa18.13■□□□□ 0.49
LETM1-203ENST00000505551 B4GALNT3Q6L9W6 998 aa18.13■□□□□ 0.49
LETM1-203ENST00000505551 C11orf95C9JLR9 678 aaPredicted RBP18.12■□□□□ 0.49
LETM1-203ENST00000505551 BCL11BQ9C0K0 894 aaPredicted RBP18.12■□□□□ 0.49
LETM1-203ENST00000505551 FMN1Q68DA7 1419 aa18.12■□□□□ 0.49
LETM1-203ENST00000505551 SETD5Q9C0A6 1442 aa18.12■□□□□ 0.49
LETM1-203ENST00000505551 MTUS2Q5JR59 1369 aa18.12■□□□□ 0.49
LETM1-203ENST00000505551 SIN3AQ96ST3 1273 aa18.11■□□□□ 0.49
LETM1-203ENST00000505551 GRIN2BQ13224 1484 aa18.11■□□□□ 0.49
LETM1-203ENST00000505551 EFCAB5A4FU69 1503 aa18.1■□□□□ 0.49
LETM1-203ENST00000505551 CHMP7Q8WUX9 453 aaPredicted RBP18.1■□□□□ 0.49
LETM1-203ENST00000505551 HIRIP3Q9BW71 556 aaPredicted RBP18.1■□□□□ 0.49
LETM1-203ENST00000505551 ANP32AP39687 249 aaKnown RBP18.1■□□□□ 0.49
LETM1-203ENST00000505551 IFT140Q96RY7 1462 aa18.08■□□□□ 0.49
LETM1-203ENST00000505551 FYCO1Q9BQS8 1478 aa18.08■□□□□ 0.49
LETM1-203ENST00000505551 ZBTB47Q9UFB7 747 aaPredicted RBP18.07■□□□□ 0.48
LETM1-203ENST00000505551 PBRM1Q86U86 1689 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms