RNA–Protein interactions for RNA: ENST00000505551.5

LETM1-203, Transcript of leucine zipper and EF-hand containing transmembrane protein 1, humanhuman

TSL 1 (best)

Gene LETM1, Length 2,710 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETM1-203ENST00000505551 NISCHQ9Y2I1 1504 aa26.26■■□□□ 1.8
LETM1-203ENST00000505551 HRCP23327 699 aa22.55■■□□□ 1.2
LETM1-203ENST00000505551 SHROOM4Q9ULL8 1493 aa22.48■■□□□ 1.19
LETM1-203ENST00000505551 DCAF8L2P0C7V8 631 aa22.41■■□□□ 1.18
LETM1-203ENST00000505551 PELP1Q8IZL8 1130 aaKnown RBP22.41■■□□□ 1.18
LETM1-203ENST00000505551 CCDC180Q9P1Z9 1646 aa22.32■■□□□ 1.16
LETM1-203ENST00000505551 MYT1Q01538 1121 aa22.13■■□□□ 1.13
LETM1-203ENST00000505551 ZCCHC6Q5VYS8 1495 aaKnown RBP22.08■■□□□ 1.13
LETM1-203ENST00000505551 PPARGC1BQ86YN6 1023 aaKnown RBP21.9■■□□□ 1.1
LETM1-203ENST00000505551 SUPT5HO00267 1087 aaKnown RBP21.86■■□□□ 1.09
LETM1-203ENST00000505551 PCGF6Q9BYE7 350 aa21.76■■□□□ 1.07
LETM1-203ENST00000505551 MYO15BQ96JP2 1530 aa21.66■■□□□ 1.06
LETM1-203ENST00000505551 PRKCSHP14314 528 aaPredicted RBP21.54■■□□□ 1.04
LETM1-203ENST00000505551 SCAF1Q9H7N4 1312 aaKnown RBP21.47■■□□□ 1.03
LETM1-203ENST00000505551 ABCC9O60706 1549 aa21.45■■□□□ 1.02
LETM1-203ENST00000505551 DCAF1Q9Y4B6 1507 aa21.41■■□□□ 1.02
LETM1-203ENST00000505551 TTBK1Q5TCY1 1321 aaPredicted RBP21.4■■□□□ 1.02
LETM1-203ENST00000505551 SLC24A1O60721 1099 aa21.37■■□□□ 1.01
LETM1-203ENST00000505551 CHIC1Q5VXU3 224 aa21.37■■□□□ 1.01
LETM1-203ENST00000505551 SCRIBQ14160 1630 aa21.15■□□□□ 0.98
LETM1-203ENST00000505551 ZEB1P37275 1124 aaPredicted RBP21.11■□□□□ 0.97
LETM1-203ENST00000505551 TRIM26Q12899 539 aaPredicted RBP21.1■□□□□ 0.97
LETM1-203ENST00000505551 APLP2Q06481 763 aa20.88■□□□□ 0.93
LETM1-203ENST00000505551 ACIN1Q9UKV3 1341 aaKnown RBP20.87■□□□□ 0.93
LETM1-203ENST00000505551 NACADO15069 1562 aa20.85■□□□□ 0.93
LETM1-203ENST00000505551 ERICH6Q7L0X2 663 aa20.79■□□□□ 0.92
LETM1-203ENST00000505551 LOC105371045A0A1W2PR82 267 aa20.78■□□□□ 0.92
LETM1-203ENST00000505551 NEUROD1Q13562 356 aa20.74■□□□□ 0.91
LETM1-203ENST00000505551 RSF1Q96T23 1441 aaPredicted RBP20.71■□□□□ 0.91
LETM1-203ENST00000505551 CECR2Q9BXF3 1484 aa20.66■□□□□ 0.9
LETM1-203ENST00000505551 RB1CC1Q8TDY2 1594 aa20.64■□□□□ 0.89
LETM1-203ENST00000505551 GTF3C3Q9Y5Q9 886 aa20.63■□□□□ 0.89
LETM1-203ENST00000505551 BCL11AQ9H165 835 aa20.6■□□□□ 0.89
LETM1-203ENST00000505551 PABPN1Q86U42 306 aaKnown RBP eCLIP20.58■□□□□ 0.89
LETM1-203ENST00000505551 CENPBP07199 599 aaPredicted RBP20.53■□□□□ 0.88
LETM1-203ENST00000505551 MROH2BQ7Z745 1585 aa20.48■□□□□ 0.87
LETM1-203ENST00000505551 FAM9AQ8IZU1 332 aaPredicted RBP20.38■□□□□ 0.85
LETM1-203ENST00000505551 WIZO95785 1651 aa20.33■□□□□ 0.84
LETM1-203ENST00000505551 TRIM41Q8WV44 630 aa20.29■□□□□ 0.84
LETM1-203ENST00000505551 DIEXFQ68CQ4 756 aaKnown RBP20.27■□□□□ 0.84
LETM1-203ENST00000505551 EHMT2Q96KQ7 1210 aa20.27■□□□□ 0.84
LETM1-203ENST00000505551 UNC13AQ9UPW8 1703 aa20.27■□□□□ 0.84
LETM1-203ENST00000505551 DAXXQ9UER7 740 aaPredicted RBP20.2■□□□□ 0.82
LETM1-203ENST00000505551 BAZ1AQ9NRL2 1556 aaPredicted RBP20.17■□□□□ 0.82
LETM1-203ENST00000505551 BICRAQ9NZM4 1560 aa20.11■□□□□ 0.81
LETM1-203ENST00000505551 SMARCA4P51532 1647 aa20.06■□□□□ 0.8
LETM1-203ENST00000505551 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.04■□□□□ 0.8
LETM1-203ENST00000505551 CCER1Q8TC90 406 aaPredicted RBP20.04■□□□□ 0.8
LETM1-203ENST00000505551 CCDC88BA6NC98 1476 aa19.94■□□□□ 0.78
LETM1-203ENST00000505551 TOP2AP11388 1531 aaKnown RBP19.9■□□□□ 0.78
LETM1-203ENST00000505551 ANP32EQ9BTT0 268 aa19.87■□□□□ 0.77
LETM1-203ENST00000505551 ZNF316A6NFI3 1004 aaPredicted RBP19.84■□□□□ 0.77
LETM1-203ENST00000505551 YTHDC1Q96MU7 727 aaKnown RBP19.84■□□□□ 0.77
LETM1-203ENST00000505551 SMARCA2P51531 1590 aa19.81■□□□□ 0.76
LETM1-203ENST00000505551 ABCC8Q09428 1581 aa19.8■□□□□ 0.76
LETM1-203ENST00000505551 EIF5BO60841 1220 aaKnown RBP19.78■□□□□ 0.76
LETM1-203ENST00000505551 CLSPNQ9HAW4 1339 aa19.74■□□□□ 0.75
LETM1-203ENST00000505551 ATAD2BQ9ULI0 1458 aa19.72■□□□□ 0.75
LETM1-203ENST00000505551 MIER1Q8N108 512 aa19.71■□□□□ 0.75
LETM1-203ENST00000505551 EIF4G1Q04637 1599 aaKnown RBP19.67■□□□□ 0.74
LETM1-203ENST00000505551 BAZ1BQ9UIG0 1483 aaKnown RBP19.67■□□□□ 0.74
LETM1-203ENST00000505551 TSHZ2Q9NRE2 1034 aa19.65■□□□□ 0.74
LETM1-203ENST00000505551 CSRNP3Q8WYN3 585 aa19.62■□□□□ 0.73
LETM1-203ENST00000505551 SUPT16HQ9Y5B9 1047 aaKnown RBP19.62■□□□□ 0.73
LETM1-203ENST00000505551 PLEKHG5O94827 1062 aa19.6■□□□□ 0.73
LETM1-203ENST00000505551 PEG3Q9GZU2 1588 aa19.57■□□□□ 0.72
LETM1-203ENST00000505551 SOGA1O94964 1423 aa19.57■□□□□ 0.72
LETM1-203ENST00000505551 WRNQ14191 1432 aaPredicted RBP eCLIP19.52■□□□□ 0.71
LETM1-203ENST00000505551 RUSC2Q8N2Y8 1516 aa19.51■□□□□ 0.71
LETM1-203ENST00000505551 UBTFP17480 764 aaKnown RBP19.45■□□□□ 0.7
LETM1-203ENST00000505551 RANGAP1P46060 587 aaPredicted RBP19.38■□□□□ 0.69
LETM1-203ENST00000505551 NCAPD3P42695 1498 aa19.36■□□□□ 0.69
LETM1-203ENST00000505551 SYNJ1O43426 1573 aa19.34■□□□□ 0.69
LETM1-203ENST00000505551 HMGXB3Q12766 1538 aa19.23■□□□□ 0.67
LETM1-203ENST00000505551 CEP162Q5TB80 1403 aa19.22■□□□□ 0.67
LETM1-203ENST00000505551 CC2D2AQ9P2K1 1620 aa19.16■□□□□ 0.66
LETM1-203ENST00000505551 EEA1Q15075 1411 aa19.16■□□□□ 0.66
LETM1-203ENST00000505551 TNIKQ9UKE5 1360 aa19.16■□□□□ 0.66
LETM1-203ENST00000505551 ANO8Q9HCE9 1232 aaPredicted RBP19.15■□□□□ 0.66
LETM1-203ENST00000505551 DNAJC5BQ9UF47 199 aa19.13■□□□□ 0.65
LETM1-203ENST00000505551 RBM19Q9Y4C8 960 aaKnown RBP19.12■□□□□ 0.65
LETM1-203ENST00000505551 CFTRP13569 1480 aa19.11■□□□□ 0.65
LETM1-203ENST00000505551 GOLGA3Q08378 1498 aa19.11■□□□□ 0.65
LETM1-203ENST00000505551 UBE2Q2Q8WVN8 375 aa19.07■□□□□ 0.64
LETM1-203ENST00000505551 CUX1P39880 1505 aa19.07■□□□□ 0.64
LETM1-203ENST00000505551 RAPGEF2Q9Y4G8 1499 aa19.07■□□□□ 0.64
LETM1-203ENST00000505551 TOP2BQ02880 1626 aa19.06■□□□□ 0.64
LETM1-203ENST00000505551 CADPSQ9ULU8 1353 aa19.06■□□□□ 0.64
LETM1-203ENST00000505551 PODXL2Q9NZ53 605 aa19.05■□□□□ 0.64
LETM1-203ENST00000505551 CEP164Q9UPV0 1460 aa19.03■□□□□ 0.64
LETM1-203ENST00000505551 MSH5O43196 834 aa19■□□□□ 0.63
LETM1-203ENST00000505551 BCANQ96GW7 911 aa18.99■□□□□ 0.63
LETM1-203ENST00000505551 HNRNPUL2Q1KMD3 747 aaKnown RBP18.99■□□□□ 0.63
LETM1-203ENST00000505551 NESP48681 1621 aa18.97■□□□□ 0.63
LETM1-203ENST00000505551 CLIP1P30622 1438 aa18.96■□□□□ 0.63
LETM1-203ENST00000505551 FKBP8Q14318 412 aa18.95■□□□□ 0.62
LETM1-203ENST00000505551 BIVM-ERCC5R4GMW8 1640 aa18.93■□□□□ 0.62
LETM1-203ENST00000505551 MYT1LQ9UL68 1186 aa18.91■□□□□ 0.62
LETM1-203ENST00000505551 FANCIQ9NVI1 1328 aa18.9■□□□□ 0.62
LETM1-203ENST00000505551 KIF27Q86VH2 1401 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 300.7 ms