RNA–Protein interactions for RNA: ENST00000504003.1

ARHGEF28-206, Transcript of Rho guanine nucleotide exchange factor 28, humanhuman

TSL 4

Gene ARHGEF28, Length 539 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF28-206ENST00000504003 SPDYE6P0CI01 402 aa15.42■□□□□ 0.06
ARHGEF28-206ENST00000504003 SPDYE2Q495Y8 402 aa15.42■□□□□ 0.06
ARHGEF28-206ENST00000504003 MRC2Q9UBG0 1479 aa15.37■□□□□ 0.05
ARHGEF28-206ENST00000504003 DNMBPQ6XZF7 1577 aa15.36■□□□□ 0.05
ARHGEF28-206ENST00000504003 TOP2BQ02880 1626 aa15.36■□□□□ 0.05
ARHGEF28-206ENST00000504003 PITPNM1O00562 1244 aa15.36■□□□□ 0.05
ARHGEF28-206ENST00000504003 BIVM-ERCC5R4GMW8 1640 aa15.35■□□□□ 0.05
ARHGEF28-206ENST00000504003 CUX1P39880 1505 aa15.33■□□□□ 0.04
ARHGEF28-206ENST00000504003 SYNJ1O43426 1573 aa15.32■□□□□ 0.04
ARHGEF28-206ENST00000504003 PIP4P2Q8N4L2 257 aa15.32■□□□□ 0.04
ARHGEF28-206ENST00000504003 TOPBP1Q92547 1522 aa15.32■□□□□ 0.04
ARHGEF28-206ENST00000504003 URB2Q14146 1524 aaKnown RBP15.29■□□□□ 0.04
ARHGEF28-206ENST00000504003 WDR62O43379 1518 aa15.28■□□□□ 0.04
ARHGEF28-206ENST00000504003 THOC2Q8NI27 1593 aaKnown RBP15.27■□□□□ 0.03
ARHGEF28-206ENST00000504003 MKRN4PQ13434 485 aaPredicted RBP15.25■□□□□ 0.03
ARHGEF28-206ENST00000504003 FGD5Q6ZNL6 1462 aa15.24■□□□□ 0.03
ARHGEF28-206ENST00000504003 FXR2P51116 673 aaKnown RBP eCLIP15.23■□□□□ 0.031e-6■□□□□ 10.1
ARHGEF28-206ENST00000504003 ZNF692Q9BU19 519 aaPredicted RBP15.22■□□□□ 0.03
ARHGEF28-206ENST00000504003 POLA1P09884 1462 aaPredicted RBP15.2■□□□□ 0.02
ARHGEF28-206ENST00000504003 SOGA1O94964 1423 aa15.19■□□□□ 0.02
ARHGEF28-206ENST00000504003 SPDYE1Q8NFV5 336 aaPredicted RBP15.18■□□□□ 0.02
ARHGEF28-206ENST00000504003 CSRNP3Q8WYN3 585 aa15.17■□□□□ 0.02
ARHGEF28-206ENST00000504003 EEA1Q15075 1411 aa15.17■□□□□ 0.02
ARHGEF28-206ENST00000504003 IFT140Q96RY7 1462 aa15.15■□□□□ 0.02
ARHGEF28-206ENST00000504003 SP7Q8TDD2 431 aaPredicted RBP15.15■□□□□ 0.02
ARHGEF28-206ENST00000504003 SSUH2Q9Y2M2 353 aa15.15■□□□□ 0.02
ARHGEF28-206ENST00000504003 CUX2O14529 1486 aa15.14■□□□□ 0.01
ARHGEF28-206ENST00000504003 KIF27Q86VH2 1401 aa15.13■□□□□ 0.01
ARHGEF28-206ENST00000504003 CLEC11AQ9Y240 323 aa15.13■□□□□ 0.01
ARHGEF28-206ENST00000504003 ABCA10Q8WWZ4 1543 aa15.12■□□□□ 0.01
ARHGEF28-206ENST00000504003 WDR97A6NE52 1622 aa15.11■□□□□ 0.01
ARHGEF28-206ENST00000504003 HAX1O00165 279 aa15.11■□□□□ 0.01
ARHGEF28-206ENST00000504003 RAD54L2Q9Y4B4 1467 aa15.11■□□□□ 0.01
ARHGEF28-206ENST00000504003 TARBP1Q13395 1621 aaKnown RBP15.1■□□□□ 0.01
ARHGEF28-206ENST00000504003 FAM9AQ8IZU1 332 aaPredicted RBP15.05■□□□□ -0
ARHGEF28-206ENST00000504003 GAPVD1Q14C86 1478 aa15.03■□□□□ -0
ARHGEF28-206ENST00000504003 EHMT2Q96KQ7 1210 aa15.02■□□□□ -0
ARHGEF28-206ENST00000504003 TDRD9Q8NDG6 1382 aaKnown RBP15.01□□□□□ -0.01
ARHGEF28-206ENST00000504003 ABCA5Q8WWZ7 1642 aa15.01□□□□□ -0.01
ARHGEF28-206ENST00000504003 ERICH3Q5RHP9 1530 aa14.99□□□□□ -0.01
ARHGEF28-206ENST00000504003 PRKAR2AP13861 404 aaKnown RBP14.99□□□□□ -0.01
ARHGEF28-206ENST00000504003 RUSC2Q8N2Y8 1516 aa14.98□□□□□ -0.01
ARHGEF28-206ENST00000504003 EIF4G3O43432 1585 aaKnown RBP14.98□□□□□ -0.01
ARHGEF28-206ENST00000504003 PBRM1Q86U86 1689 aa14.97□□□□□ -0.01
ARHGEF28-206ENST00000504003 GRIN2BQ13224 1484 aa14.97□□□□□ -0.01
ARHGEF28-206ENST00000504003 CUL7Q14999 1698 aa14.97□□□□□ -0.01
ARHGEF28-206ENST00000504003 AQRO60306 1485 aaKnown RBP eCLIP14.96□□□□□ -0.01
ARHGEF28-206ENST00000504003 ZNF608Q9ULD9 1512 aaPredicted RBP14.96□□□□□ -0.02
ARHGEF28-206ENST00000504003 IGF1RP08069 1367 aa14.94□□□□□ -0.02
ARHGEF28-206ENST00000504003 KIF21BO75037 1637 aa14.92□□□□□ -0.02
ARHGEF28-206ENST00000504003 CARMIL1Q5VZK9 1371 aa14.9□□□□□ -0.02
ARHGEF28-206ENST00000504003 MAGI1Q96QZ7 1491 aaPredicted RBP14.89□□□□□ -0.03
ARHGEF28-206ENST00000504003 GOLGA3Q08378 1498 aa14.89□□□□□ -0.03
ARHGEF28-206ENST00000504003 PRR29P0C7W0 189 aa14.88□□□□□ -0.03
ARHGEF28-206ENST00000504003 RAPGEF2Q9Y4G8 1499 aa14.88□□□□□ -0.03
ARHGEF28-206ENST00000504003 FHAD1B1AJZ9 1412 aa14.87□□□□□ -0.03
ARHGEF28-206ENST00000504003 PRXQ9BXM0 1461 aa14.87□□□□□ -0.03
ARHGEF28-206ENST00000504003 SNAPC4Q5SXM2 1469 aa14.85□□□□□ -0.03
ARHGEF28-206ENST00000504003 UBTFP17480 764 aaKnown RBP14.85□□□□□ -0.03
ARHGEF28-206ENST00000504003 ADAMTS12P58397 1594 aa14.84□□□□□ -0.03
ARHGEF28-206ENST00000504003 CHMP7Q8WUX9 453 aaPredicted RBP14.83□□□□□ -0.04
ARHGEF28-206ENST00000504003 SYNJ2O15056 1496 aa14.82□□□□□ -0.04
ARHGEF28-206ENST00000504003 LOC105371045A0A1W2PR82 267 aa14.78□□□□□ -0.04
ARHGEF28-206ENST00000504003 EVX2Q03828 476 aa14.76□□□□□ -0.05
ARHGEF28-206ENST00000504003 CHADLQ6NUI6 762 aa14.76□□□□□ -0.05
ARHGEF28-206ENST00000504003 GRIN2AQ12879 1464 aa14.76□□□□□ -0.05
ARHGEF28-206ENST00000504003 TNIKQ9UKE5 1360 aa14.75□□□□□ -0.05
ARHGEF28-206ENST00000504003 C19orf67A6NJJ6 358 aa14.74□□□□□ -0.05
ARHGEF28-206ENST00000504003 CTTNBP2Q8WZ74 1663 aa14.74□□□□□ -0.05
ARHGEF28-206ENST00000504003 CHD1O14646 1710 aa14.72□□□□□ -0.05
ARHGEF28-206ENST00000504003 KIAA0586Q9BVV6 1533 aa14.66□□□□□ -0.06
ARHGEF28-206ENST00000504003 IQGAP2Q13576 1575 aa14.65□□□□□ -0.06
ARHGEF28-206ENST00000504003 NUP160Q12769 1436 aa14.65□□□□□ -0.06
ARHGEF28-206ENST00000504003 STAG3Q9UJ98 1225 aa14.64□□□□□ -0.07
ARHGEF28-206ENST00000504003 SPDYE4A6NLX3 237 aa14.62□□□□□ -0.07
ARHGEF28-206ENST00000504003 CEP170Q5SW79 1584 aa14.62□□□□□ -0.07
ARHGEF28-206ENST00000504003 CEP162Q5TB80 1403 aa14.62□□□□□ -0.07
ARHGEF28-206ENST00000504003 CLIP1P30622 1438 aa14.6□□□□□ -0.07
ARHGEF28-206ENST00000504003 RANGAP1P46060 587 aaPredicted RBP14.6□□□□□ -0.07
ARHGEF28-206ENST00000504003 EFCAB5A4FU69 1503 aa14.59□□□□□ -0.07
ARHGEF28-206ENST00000504003 FARP1Q9Y4F1 1045 aaPredicted RBP14.58□□□□□ -0.08
ARHGEF28-206ENST00000504003 CARMIL2Q6F5E8 1435 aa14.57□□□□□ -0.08
ARHGEF28-206ENST00000504003 UGGT2Q9NYU1 1516 aa14.56□□□□□ -0.08
ARHGEF28-206ENST00000504003 JPH4Q96JJ6 628 aa14.55□□□□□ -0.08
ARHGEF28-206ENST00000504003 CD44P16070 742 aaKnown RBP14.53□□□□□ -0.08
ARHGEF28-206ENST00000504003 CLASP1Q7Z460 1538 aa14.52□□□□□ -0.08
ARHGEF28-206ENST00000504003 GABBR2O75899 941 aa14.52□□□□□ -0.09
ARHGEF28-206ENST00000504003 SAMD9Q5K651 1589 aa14.51□□□□□ -0.09
ARHGEF28-206ENST00000504003 ARHGAP35Q9NRY4 1499 aa14.5□□□□□ -0.09
ARHGEF28-206ENST00000504003 SHROOM2Q13796 1616 aa14.49□□□□□ -0.09
ARHGEF28-206ENST00000504003 FMN1Q68DA7 1419 aa14.48□□□□□ -0.09
ARHGEF28-206ENST00000504003 PRG4Q92954 1404 aaPredicted RBP14.48□□□□□ -0.09
ARHGEF28-206ENST00000504003 KIAA0556O60303 1618 aa14.48□□□□□ -0.09
ARHGEF28-206ENST00000504003 P3H3Q8IVL6 736 aa14.47□□□□□ -0.09
ARHGEF28-206ENST00000504003 CLCN6P51797 869 aa14.44□□□□□ -0.1
ARHGEF28-206ENST00000504003 DISP1Q96F81 1524 aa14.44□□□□□ -0.1
ARHGEF28-206ENST00000504003 FHOD3Q2V2M9 1422 aa14.43□□□□□ -0.1
ARHGEF28-206ENST00000504003 VPS8Q8N3P4 1428 aa14.43□□□□□ -0.1
ARHGEF28-206ENST00000504003 ARAP1Q96P48 1450 aa14.43□□□□□ -0.1
ARHGEF28-206ENST00000504003 CREBZFQ9NS37 354 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms