RNA–Protein interactions for RNA: ENST00000497739.1

PTPN3-206, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 3

Gene PTPN3, Length 781 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-206ENST00000497739 FGD5Q6ZNL6 1462 aa17.14■□□□□ 0.33
PTPN3-206ENST00000497739 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.14■□□□□ 0.33
PTPN3-206ENST00000497739 FOXD4L1Q9NU39 408 aa17.14■□□□□ 0.33
PTPN3-206ENST00000497739 MAGI1Q96QZ7 1491 aaPredicted RBP17.12■□□□□ 0.33
PTPN3-206ENST00000497739 CUX1P39880 1505 aa17.11■□□□□ 0.33
PTPN3-206ENST00000497739 SYNJ1O43426 1573 aa17.09■□□□□ 0.33
PTPN3-206ENST00000497739 SYNJ2O15056 1496 aa17.07■□□□□ 0.32
PTPN3-206ENST00000497739 GRIN2BQ13224 1484 aa17.07■□□□□ 0.32
PTPN3-206ENST00000497739 CHMP7Q8WUX9 453 aaPredicted RBP17.03■□□□□ 0.32
PTPN3-206ENST00000497739 GAPVD1Q14C86 1478 aa17■□□□□ 0.31
PTPN3-206ENST00000497739 U3KPZ7 1027 aaPredicted RBP16.99■□□□□ 0.31
PTPN3-206ENST00000497739 SUPT5HO00267 1087 aaKnown RBP16.97■□□□□ 0.31
PTPN3-206ENST00000497739 RNF39Q9H2S5 420 aa16.96■□□□□ 0.31
PTPN3-206ENST00000497739 ABCA5Q8WWZ7 1642 aa16.96■□□□□ 0.3
PTPN3-206ENST00000497739 PBRM1Q86U86 1689 aa16.95■□□□□ 0.3
PTPN3-206ENST00000497739 ABCA10Q8WWZ4 1543 aa16.94■□□□□ 0.3
PTPN3-206ENST00000497739 ERCC6L2Q5T890 1561 aa16.93■□□□□ 0.3
PTPN3-206ENST00000497739 GRIN2AQ12879 1464 aa16.88■□□□□ 0.29
PTPN3-206ENST00000497739 NUP160Q12769 1436 aa16.87■□□□□ 0.29
PTPN3-206ENST00000497739 MYCNP04198 464 aaPredicted RBP16.87■□□□□ 0.29
PTPN3-206ENST00000497739 CEP170Q5SW79 1584 aa16.85■□□□□ 0.29
PTPN3-206ENST00000497739 ADAMTS12P58397 1594 aa16.85■□□□□ 0.29
PTPN3-206ENST00000497739 SHROOM2Q13796 1616 aa16.82■□□□□ 0.28
PTPN3-206ENST00000497739 WRNQ14191 1432 aaPredicted RBP eCLIP16.77■□□□□ 0.27
PTPN3-206ENST00000497739 FHAD1B1AJZ9 1412 aa16.75■□□□□ 0.27
PTPN3-206ENST00000497739 TOP2BQ02880 1626 aa16.72■□□□□ 0.27
PTPN3-206ENST00000497739 ERICH3Q5RHP9 1530 aa16.71■□□□□ 0.27
PTPN3-206ENST00000497739 BIVM-ERCC5R4GMW8 1640 aa16.71■□□□□ 0.27
PTPN3-206ENST00000497739 C1QBPQ07021 282 aaKnown RBP16.71■□□□□ 0.27
PTPN3-206ENST00000497739 KIF13AQ9H1H9 1805 aa16.7■□□□□ 0.26
PTPN3-206ENST00000497739 PRG4Q92954 1404 aaPredicted RBP16.67■□□□□ 0.26
PTPN3-206ENST00000497739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.65■□□□□ 0.26
PTPN3-206ENST00000497739 HNRNPUL2Q1KMD3 747 aaKnown RBP16.65■□□□□ 0.26
PTPN3-206ENST00000497739 RUSC2Q8N2Y8 1516 aa16.63■□□□□ 0.25
PTPN3-206ENST00000497739 ABCC10Q5T3U5 1492 aa16.61■□□□□ 0.25
PTPN3-206ENST00000497739 SAMD1Q6SPF0 538 aaPredicted RBP16.61■□□□□ 0.25
PTPN3-206ENST00000497739 MAPKBP1O60336 1514 aa16.6■□□□□ 0.25
PTPN3-206ENST00000497739 JPH4Q96JJ6 628 aa16.58■□□□□ 0.24
PTPN3-206ENST00000497739 DIP2BQ9P265 1576 aa16.58■□□□□ 0.24
PTPN3-206ENST00000497739 ATXN8OSP0DMR3 200 aa16.57■□□□□ 0.24
PTPN3-206ENST00000497739 ADCY10Q96PN6 1610 aa16.56■□□□□ 0.24
PTPN3-206ENST00000497739 FAM69CQ0P6D2 419 aa16.53■□□□□ 0.24
PTPN3-206ENST00000497739 ATF5Q9Y2D1 282 aaPredicted RBP16.53■□□□□ 0.24
PTPN3-206ENST00000497739 SPINK5Q9NQ38 1064 aaPredicted RBP16.49■□□□□ 0.23
PTPN3-206ENST00000497739 KDM4FA0A1W2PPD8 638 aa16.48■□□□□ 0.23
PTPN3-206ENST00000497739 KIAA0586Q9BVV6 1533 aa16.46■□□□□ 0.23
PTPN3-206ENST00000497739 KDM6BO15054 1643 aa16.45■□□□□ 0.22
PTPN3-206ENST00000497739 APLP2Q06481 763 aa16.43■□□□□ 0.22
PTPN3-206ENST00000497739 IGF1RP08069 1367 aa16.42■□□□□ 0.22
PTPN3-206ENST00000497739 NPM1P06748 294 aaKnown RBP eCLIP16.4■□□□□ 0.22
PTPN3-206ENST00000497739 CACNB1Q02641 598 aaPredicted RBP16.4■□□□□ 0.22
PTPN3-206ENST00000497739 CUL7Q14999 1698 aa16.37■□□□□ 0.21
PTPN3-206ENST00000497739 ABCC2Q92887 1545 aa16.35■□□□□ 0.21
PTPN3-206ENST00000497739 PPRC1Q5VV67 1664 aaKnown RBP16.34■□□□□ 0.21
PTPN3-206ENST00000497739 CAPN15O75808 1086 aa16.33■□□□□ 0.2
PTPN3-206ENST00000497739 PTPRGP23470 1445 aa16.33■□□□□ 0.2
PTPN3-206ENST00000497739 KIF27Q86VH2 1401 aa16.33■□□□□ 0.2
PTPN3-206ENST00000497739 TSPOAP1O95153 1857 aa16.32■□□□□ 0.2
PTPN3-206ENST00000497739 GLI2P10070 1586 aa16.32■□□□□ 0.2
PTPN3-206ENST00000497739 ASXL2Q76L83 1435 aa16.31■□□□□ 0.2
PTPN3-206ENST00000497739 UHRF1BP1LA0JNW5 1464 aa16.29■□□□□ 0.2
PTPN3-206ENST00000497739 TNIKQ9UKE5 1360 aa16.29■□□□□ 0.2
PTPN3-206ENST00000497739 COL17A1Q9UMD9 1497 aaPredicted RBP16.29■□□□□ 0.2
PTPN3-206ENST00000497739 PLB1Q6P1J6 1458 aa16.28■□□□□ 0.2
PTPN3-206ENST00000497739 ILDR1Q86SU0 546 aaPredicted RBP16.27■□□□□ 0.2
PTPN3-206ENST00000497739 ADGRL1O94910 1474 aa16.27■□□□□ 0.19
PTPN3-206ENST00000497739 DISP1Q96F81 1524 aa16.26■□□□□ 0.19
PTPN3-206ENST00000497739 ZNF219Q9P2Y4 722 aaPredicted RBP16.26■□□□□ 0.19
PTPN3-206ENST00000497739 CARMIL1Q5VZK9 1371 aa16.26■□□□□ 0.19
PTPN3-206ENST00000497739 IQGAP2Q13576 1575 aa16.25■□□□□ 0.19
PTPN3-206ENST00000497739 CARMIL2Q6F5E8 1435 aa16.24■□□□□ 0.19
PTPN3-206ENST00000497739 EPRSP07814 1512 aaKnown RBP16.23■□□□□ 0.19
PTPN3-206ENST00000497739 UACAQ9BZF9 1416 aa16.22■□□□□ 0.19
PTPN3-206ENST00000497739 KDM5BQ9UGL1 1544 aa16.22■□□□□ 0.19
PTPN3-206ENST00000497739 MAP3K4Q9Y6R4 1608 aa16.22■□□□□ 0.19
PTPN3-206ENST00000497739 TTBK1Q5TCY1 1321 aaPredicted RBP16.18■□□□□ 0.18
PTPN3-206ENST00000497739 UGGT2Q9NYU1 1516 aa16.17■□□□□ 0.18
PTPN3-206ENST00000497739 HECW2Q9P2P5 1572 aa16.16■□□□□ 0.18
PTPN3-206ENST00000497739 DSG3P32926 999 aa16.15■□□□□ 0.18
PTPN3-206ENST00000497739 ZCCHC11Q5TAX3 1644 aaKnown RBP16.15■□□□□ 0.18
PTPN3-206ENST00000497739 TEX14Q8IWB6 1497 aa16.14■□□□□ 0.17
PTPN3-206ENST00000497739 KIAA0556O60303 1618 aa16.13■□□□□ 0.17
PTPN3-206ENST00000497739 WDR7Q9Y4E6 1490 aa16.1■□□□□ 0.17
PTPN3-206ENST00000497739 RAPGEF2Q9Y4G8 1499 aa16.08■□□□□ 0.16
PTPN3-206ENST00000497739 POLA2Q14181 598 aa16.06■□□□□ 0.16
PTPN3-206ENST00000497739 MAGI3Q5TCQ9 1506 aa16.05■□□□□ 0.16
PTPN3-206ENST00000497739 ABCB7O75027 752 aa16.05■□□□□ 0.16
PTPN3-206ENST00000497739 ABCA8O94911 1581 aa16.01■□□□□ 0.15
PTPN3-206ENST00000497739 CD109Q6YHK3 1445 aa15.99■□□□□ 0.15
PTPN3-206ENST00000497739 CFAP43Q8NDM7 1665 aa15.99■□□□□ 0.15
PTPN3-206ENST00000497739 ARAP3Q8WWN8 1544 aa15.94■□□□□ 0.14
PTPN3-206ENST00000497739 KIF21BO75037 1637 aa15.94■□□□□ 0.14
PTPN3-206ENST00000497739 CTTNBP2Q8WZ74 1663 aa15.93■□□□□ 0.14
PTPN3-206ENST00000497739 GOLGA3Q08378 1498 aa15.93■□□□□ 0.14
PTPN3-206ENST00000497739 PRXQ9BXM0 1461 aa15.91■□□□□ 0.14
PTPN3-206ENST00000497739 KCNH8Q96L42 1107 aa15.88■□□□□ 0.13
PTPN3-206ENST00000497739 ADAMTSL3P82987 1691 aa15.87■□□□□ 0.13
PTPN3-206ENST00000497739 PTPRMP28827 1452 aa15.86■□□□□ 0.13
PTPN3-206ENST00000497739 ABCA9Q8IUA7 1624 aa15.86■□□□□ 0.13
PTPN3-206ENST00000497739 ATP10BO94823 1461 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms