RNA–Protein interactions for RNA: ENST00000497739.1

PTPN3-206, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 3

Gene PTPN3, Length 781 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-206ENST00000497739 AEBP2Q6ZN18 517 aaPredicted RBP27.34■■□□□ 1.97
PTPN3-206ENST00000497739 CHIC1Q5VXU3 224 aa26.67■■□□□ 1.86
PTPN3-206ENST00000497739 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
PTPN3-206ENST00000497739 PHF23Q9BUL5 403 aaPredicted RBP23.54■■□□□ 1.36
PTPN3-206ENST00000497739 SENP3Q9H4L4 574 aaPredicted RBP23.06■■□□□ 1.28
PTPN3-206ENST00000497739 PLPPR3Q6T4P5 718 aa21.61■■□□□ 1.05
PTPN3-206ENST00000497739 ABCC9O60706 1549 aa21.57■■□□□ 1.04
PTPN3-206ENST00000497739 FOXD1Q16676 465 aa21.49■■□□□ 1.03
PTPN3-206ENST00000497739 CCDC180Q9P1Z9 1646 aa21.28■■□□□ 1
PTPN3-206ENST00000497739 PPP6R1Q9UPN7 881 aa20.75■□□□□ 0.91
PTPN3-206ENST00000497739 ADRA2BP18089 450 aa20.68■□□□□ 0.9
PTPN3-206ENST00000497739 DNAJC5BQ9UF47 199 aa20.57■□□□□ 0.88
PTPN3-206ENST00000497739 RB1CC1Q8TDY2 1594 aa20.38■□□□□ 0.85
PTPN3-206ENST00000497739 NACADO15069 1562 aa20.19■□□□□ 0.82
PTPN3-206ENST00000497739 PIAS4Q8N2W9 510 aaPredicted RBP20.16■□□□□ 0.82
PTPN3-206ENST00000497739 PABPN1Q86U42 306 aaKnown RBP eCLIP20■□□□□ 0.79
PTPN3-206ENST00000497739 UNC13AQ9UPW8 1703 aa19.91■□□□□ 0.78
PTPN3-206ENST00000497739 BICRAQ9NZM4 1560 aa19.9■□□□□ 0.78
PTPN3-206ENST00000497739 MYO15BQ96JP2 1530 aa19.87■□□□□ 0.77
PTPN3-206ENST00000497739 DCAF8L2P0C7V8 631 aa19.82■□□□□ 0.76
PTPN3-206ENST00000497739 MSH5O43196 834 aa19.7■□□□□ 0.74
PTPN3-206ENST00000497739 SHROOM4Q9ULL8 1493 aa19.58■□□□□ 0.72
PTPN3-206ENST00000497739 ZCCHC6Q5VYS8 1495 aaKnown RBP19.53■□□□□ 0.72
PTPN3-206ENST00000497739 DCAF1Q9Y4B6 1507 aa19.5■□□□□ 0.71
PTPN3-206ENST00000497739 CECR2Q9BXF3 1484 aa19.48■□□□□ 0.71
PTPN3-206ENST00000497739 CC2D2AQ9P2K1 1620 aa19.47■□□□□ 0.71
PTPN3-206ENST00000497739 EIF4G1Q04637 1599 aaKnown RBP19.39■□□□□ 0.69
PTPN3-206ENST00000497739 SCRIBQ14160 1630 aa19.36■□□□□ 0.69
PTPN3-206ENST00000497739 PPP4R3CPQ6ZMV5 832 aa19.08■□□□□ 0.64
PTPN3-206ENST00000497739 DNAJC5Q9H3Z4 198 aa19.06■□□□□ 0.64
PTPN3-206ENST00000497739 SCAF1Q9H7N4 1312 aaKnown RBP18.8■□□□□ 0.6
PTPN3-206ENST00000497739 MAPK8IP2Q13387 824 aaPredicted RBP18.78■□□□□ 0.6
PTPN3-206ENST00000497739 CUX2O14529 1486 aa18.74■□□□□ 0.59
PTPN3-206ENST00000497739 KCNA4P22459 653 aa18.69■□□□□ 0.58
PTPN3-206ENST00000497739 NCAPD3P42695 1498 aa18.68■□□□□ 0.58
PTPN3-206ENST00000497739 ERCC6Q03468 1493 aa18.59■□□□□ 0.57
PTPN3-206ENST00000497739 ATAD2BQ9ULI0 1458 aa18.58■□□□□ 0.56
PTPN3-206ENST00000497739 CNKSR2Q8WXI2 1034 aa18.53■□□□□ 0.56
PTPN3-206ENST00000497739 HMGXB3Q12766 1538 aa18.52■□□□□ 0.56
PTPN3-206ENST00000497739 NCBP3Q53F19 620 aaKnown RBP18.5■□□□□ 0.55
PTPN3-206ENST00000497739 NESP48681 1621 aa18.48■□□□□ 0.55
PTPN3-206ENST00000497739 DMRT2Q9Y5R5 561 aa18.46■□□□□ 0.55
PTPN3-206ENST00000497739 SMARCA2P51531 1590 aa18.46■□□□□ 0.55
PTPN3-206ENST00000497739 SMARCA4P51532 1647 aa18.45■□□□□ 0.54
PTPN3-206ENST00000497739 THOC2Q8NI27 1593 aaKnown RBP18.38■□□□□ 0.53
PTPN3-206ENST00000497739 PEG3Q9GZU2 1588 aa18.34■□□□□ 0.53
PTPN3-206ENST00000497739 BAZ1BQ9UIG0 1483 aaKnown RBP18.33■□□□□ 0.53
PTPN3-206ENST00000497739 NPM3O75607 178 aaKnown RBP18.33■□□□□ 0.52
PTPN3-206ENST00000497739 BAZ1AQ9NRL2 1556 aaPredicted RBP18.3■□□□□ 0.52
PTPN3-206ENST00000497739 LAMC3Q9Y6N6 1575 aa18.25■□□□□ 0.51
PTPN3-206ENST00000497739 MROH2BQ7Z745 1585 aa18.18■□□□□ 0.5
PTPN3-206ENST00000497739 KIF21AQ7Z4S6 1674 aa18.18■□□□□ 0.5
PTPN3-206ENST00000497739 RNF216Q9NWF9 866 aaPredicted RBP18.17■□□□□ 0.5
PTPN3-206ENST00000497739 HOXD11P31277 338 aaPredicted RBP18.14■□□□□ 0.49
PTPN3-206ENST00000497739 PDS5BQ9NTI5 1447 aa18.14■□□□□ 0.49
PTPN3-206ENST00000497739 CADPSQ9ULU8 1353 aa18.05■□□□□ 0.48
PTPN3-206ENST00000497739 WDR62O43379 1518 aa18.05■□□□□ 0.48
PTPN3-206ENST00000497739 MRC2Q9UBG0 1479 aa18.05■□□□□ 0.48
PTPN3-206ENST00000497739 TRIM41Q8WV44 630 aa18■□□□□ 0.47
PTPN3-206ENST00000497739 POTEDQ86YR6 584 aa17.96■□□□□ 0.47
PTPN3-206ENST00000497739 WIZO95785 1651 aa17.9■□□□□ 0.46
PTPN3-206ENST00000497739 CEP164Q9UPV0 1460 aa17.88■□□□□ 0.45
PTPN3-206ENST00000497739 FANCD2Q9BXW9 1451 aa17.86■□□□□ 0.45
PTPN3-206ENST00000497739 CFTRP13569 1480 aa17.83■□□□□ 0.45
PTPN3-206ENST00000497739 URB2Q14146 1524 aaKnown RBP17.77■□□□□ 0.44
PTPN3-206ENST00000497739 OSCARQ8IYS5 282 aa17.74■□□□□ 0.43
PTPN3-206ENST00000497739 SLC4A1APQ9BWU0 796 aaKnown RBP17.74■□□□□ 0.43
PTPN3-206ENST00000497739 RSF1Q96T23 1441 aaPredicted RBP17.7■□□□□ 0.42
PTPN3-206ENST00000497739 TOP2AP11388 1531 aaKnown RBP17.68■□□□□ 0.42
PTPN3-206ENST00000497739 RIMBP3CA6NJZ7 1639 aa17.61■□□□□ 0.41
PTPN3-206ENST00000497739 RIMBP3BA6NNM3 1639 aa17.61■□□□□ 0.41
PTPN3-206ENST00000497739 RIMBP3Q9UFD9 1639 aa17.61■□□□□ 0.41
PTPN3-206ENST00000497739 ZNF608Q9ULD9 1512 aaPredicted RBP17.6■□□□□ 0.41
PTPN3-206ENST00000497739 ARHGEF11O15085 1522 aa17.56■□□□□ 0.4
PTPN3-206ENST00000497739 IFT140Q96RY7 1462 aa17.55■□□□□ 0.4
PTPN3-206ENST00000497739 PRDM2Q13029 1718 aa17.52■□□□□ 0.4
PTPN3-206ENST00000497739 DCAF8L1A6NGE4 600 aa17.51■□□□□ 0.39
PTPN3-206ENST00000497739 TOPBP1Q92547 1522 aa17.49■□□□□ 0.39
PTPN3-206ENST00000497739 CCDC88BA6NC98 1476 aa17.48■□□□□ 0.39
PTPN3-206ENST00000497739 EIF4G3O43432 1585 aaKnown RBP17.47■□□□□ 0.39
PTPN3-206ENST00000497739 DNMBPQ6XZF7 1577 aa17.4■□□□□ 0.38
PTPN3-206ENST00000497739 ARAP1Q96P48 1450 aa17.39■□□□□ 0.37
PTPN3-206ENST00000497739 TARBP1Q13395 1621 aaKnown RBP17.39■□□□□ 0.37
PTPN3-206ENST00000497739 ABCC8Q09428 1581 aa17.36■□□□□ 0.37
PTPN3-206ENST00000497739 SLC4A2P04920 1241 aa17.36■□□□□ 0.37
PTPN3-206ENST00000497739 AQRO60306 1485 aaKnown RBP eCLIP17.36■□□□□ 0.37
PTPN3-206ENST00000497739 CHD1O14646 1710 aa17.34■□□□□ 0.37
PTPN3-206ENST00000497739 CYB5RLQ6IPT4 315 aa17.33■□□□□ 0.36
PTPN3-206ENST00000497739 POLA1P09884 1462 aaPredicted RBP17.31■□□□□ 0.36
PTPN3-206ENST00000497739 ZBTB22O15209 634 aa17.25■□□□□ 0.35
PTPN3-206ENST00000497739 CLASP1Q7Z460 1538 aa17.23■□□□□ 0.35
PTPN3-206ENST00000497739 EHMT2Q96KQ7 1210 aa17.23■□□□□ 0.35
PTPN3-206ENST00000497739 RAD54L2Q9Y4B4 1467 aa17.23■□□□□ 0.35
PTPN3-206ENST00000497739 TDRD9Q8NDG6 1382 aaKnown RBP17.19■□□□□ 0.34
PTPN3-206ENST00000497739 TRHP20396 242 aaPredicted RBP17.18■□□□□ 0.34
PTPN3-206ENST00000497739 SNAPC4Q5SXM2 1469 aa17.18■□□□□ 0.34
PTPN3-206ENST00000497739 FBLN2P98095 1184 aa17.17■□□□□ 0.34
PTPN3-206ENST00000497739 SOGA1O94964 1423 aa17.16■□□□□ 0.34
PTPN3-206ENST00000497739 CSRNP3Q8WYN3 585 aa17.16■□□□□ 0.34
PTPN3-206ENST00000497739 WDR97A6NE52 1622 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms