RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 DNMBPQ6XZF7 1577 aa10.42□□□□□ -0.74
NPHP3-208ENST00000490993 ARID3CA6NKF2 412 aa10.42□□□□□ -0.74
NPHP3-208ENST00000490993 ARHGAP35Q9NRY4 1499 aa10.42□□□□□ -0.74
NPHP3-208ENST00000490993 LAMC3Q9Y6N6 1575 aa10.41□□□□□ -0.74
NPHP3-208ENST00000490993 TONSLQ96HA7 1378 aa10.4□□□□□ -0.74
NPHP3-208ENST00000490993 GAPVD1Q14C86 1478 aa10.4□□□□□ -0.75
NPHP3-208ENST00000490993 RAD54L2Q9Y4B4 1467 aa10.4□□□□□ -0.75
NPHP3-208ENST00000490993 NEFLP07196 543 aa10.4□□□□□ -0.75
NPHP3-208ENST00000490993 TOPBP1Q92547 1522 aa10.4□□□□□ -0.75
NPHP3-208ENST00000490993 MYT1LQ9UL68 1186 aa10.37□□□□□ -0.75
NPHP3-208ENST00000490993 FHOD3Q2V2M9 1422 aa10.36□□□□□ -0.75
NPHP3-208ENST00000490993 SETD5Q9C0A6 1442 aa10.36□□□□□ -0.75
NPHP3-208ENST00000490993 ZNF777Q9ULD5 760 aaPredicted RBP10.36□□□□□ -0.75
NPHP3-208ENST00000490993 POLA1P09884 1462 aaPredicted RBP10.36□□□□□ -0.75
NPHP3-208ENST00000490993 NESP48681 1621 aa10.35□□□□□ -0.75
NPHP3-208ENST00000490993 ABCA10Q8WWZ4 1543 aa10.35□□□□□ -0.75
NPHP3-208ENST00000490993 ARAP1Q96P48 1450 aa10.35□□□□□ -0.75
NPHP3-208ENST00000490993 TIMELESSQ9UNS1 1208 aa10.35□□□□□ -0.75
NPHP3-208ENST00000490993 ANP32CO43423 234 aa10.34□□□□□ -0.75
NPHP3-208ENST00000490993 EFCAB5A4FU69 1503 aa10.34□□□□□ -0.75
NPHP3-208ENST00000490993 PLEKHD1A6NEE1 506 aa10.34□□□□□ -0.75
NPHP3-208ENST00000490993 CARMIL2Q6F5E8 1435 aa10.33□□□□□ -0.76
NPHP3-208ENST00000490993 MRC2Q9UBG0 1479 aa10.32□□□□□ -0.76
NPHP3-208ENST00000490993 CHIC2Q9UKJ5 165 aa10.32□□□□□ -0.76
NPHP3-208ENST00000490993 CUL7Q14999 1698 aa10.3□□□□□ -0.76
NPHP3-208ENST00000490993 CASKIN1Q8WXD9 1431 aa10.3□□□□□ -0.76
NPHP3-208ENST00000490993 TSPY4P0CV99 314 aa10.3□□□□□ -0.76
NPHP3-208ENST00000490993 TSPY10P0CW01 314 aa10.3□□□□□ -0.76
NPHP3-208ENST00000490993 FYCO1Q9BQS8 1478 aa10.29□□□□□ -0.76
NPHP3-208ENST00000490993 GRIN2BQ13224 1484 aa10.29□□□□□ -0.76
NPHP3-208ENST00000490993 CFDP1Q9UEE9 299 aaPredicted RBP10.28□□□□□ -0.76
NPHP3-208ENST00000490993 RAB3GAP2Q9H2M9 1393 aa10.28□□□□□ -0.76
NPHP3-208ENST00000490993 LRRC9Q6ZRR7 1453 aa10.28□□□□□ -0.76
NPHP3-208ENST00000490993 IFT140Q96RY7 1462 aa10.28□□□□□ -0.76
NPHP3-208ENST00000490993 PRDM2Q13029 1718 aa10.28□□□□□ -0.76
NPHP3-208ENST00000490993 RRP7BPQ9NSQ0 103 aa10.28□□□□□ -0.76
NPHP3-208ENST00000490993 RRBP1Q9P2E9 1410 aaKnown RBP10.27□□□□□ -0.76
NPHP3-208ENST00000490993 POLR3GLQ9BT43 218 aa10.27□□□□□ -0.77
NPHP3-208ENST00000490993 CCDC18Q5T9S5 1454 aa10.27□□□□□ -0.77
NPHP3-208ENST00000490993 MAP3K1Q13233 1512 aa10.25□□□□□ -0.77
NPHP3-208ENST00000490993 DHX57Q6P158 1386 aaKnown RBP10.24□□□□□ -0.77
NPHP3-208ENST00000490993 GTF3C3Q9Y5Q9 886 aa10.24□□□□□ -0.77
NPHP3-208ENST00000490993 TIAM1Q13009 1591 aa10.23□□□□□ -0.77
NPHP3-208ENST00000490993 AQRO60306 1485 aaKnown RBP eCLIP10.23□□□□□ -0.77
NPHP3-208ENST00000490993 URB2Q14146 1524 aaKnown RBP10.22□□□□□ -0.77
NPHP3-208ENST00000490993 SLC4A1APQ9BWU0 796 aaKnown RBP10.22□□□□□ -0.77
NPHP3-208ENST00000490993 ZNF326Q5BKZ1 582 aaKnown RBP10.22□□□□□ -0.77
NPHP3-208ENST00000490993 MIER1Q8N108 512 aa10.22□□□□□ -0.77
NPHP3-208ENST00000490993 NPM1P06748 294 aaKnown RBP eCLIP10.21□□□□□ -0.78
NPHP3-208ENST00000490993 DDX10Q13206 875 aaKnown RBP10.2□□□□□ -0.78
NPHP3-208ENST00000490993 FGD6Q6ZV73 1430 aa10.19□□□□□ -0.78
NPHP3-208ENST00000490993 PHLDB1Q86UU1 1377 aa10.19□□□□□ -0.78
NPHP3-208ENST00000490993 JPH4Q96JJ6 628 aa10.19□□□□□ -0.78
NPHP3-208ENST00000490993 SIN3AQ96ST3 1273 aa10.19□□□□□ -0.78
NPHP3-208ENST00000490993 MYOM3Q5VTT5 1437 aa10.18□□□□□ -0.78
NPHP3-208ENST00000490993 EIF4G2P78344 907 aaKnown RBP eCLIP10.18□□□□□ -0.78
NPHP3-208ENST00000490993 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.17□□□□□ -0.78
NPHP3-208ENST00000490993 EHBP1L1Q8N3D4 1523 aa10.16□□□□□ -0.78
NPHP3-208ENST00000490993 NCOA2Q15596 1464 aa10.15□□□□□ -0.78
NPHP3-208ENST00000490993 HECW1Q76N89 1606 aa10.15□□□□□ -0.79
NPHP3-208ENST00000490993 PCF11O94913 1555 aaKnown RBP10.14□□□□□ -0.79
NPHP3-208ENST00000490993 IQGAP2Q13576 1575 aa10.13□□□□□ -0.79
NPHP3-208ENST00000490993 ANKRD30AQ9BXX3 1397 aa10.13□□□□□ -0.79
NPHP3-208ENST00000490993 KIAA0586Q9BVV6 1533 aa10.13□□□□□ -0.79
NPHP3-208ENST00000490993 RSPH4AQ5TD94 716 aa10.12□□□□□ -0.79
NPHP3-208ENST00000490993 SNAPC4Q5SXM2 1469 aa10.12□□□□□ -0.79
NPHP3-208ENST00000490993 KCNH8Q96L42 1107 aa10.12□□□□□ -0.79
NPHP3-208ENST00000490993 PPP1R15AO75807 674 aaPredicted RBP10.11□□□□□ -0.79
NPHP3-208ENST00000490993 MPHOSPH9Q99550 1183 aa10.11□□□□□ -0.79
NPHP3-208ENST00000490993 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.1□□□□□ -0.79
NPHP3-208ENST00000490993 MIA2Q96PC5 1412 aa10.1□□□□□ -0.79
NPHP3-208ENST00000490993 PTPRGP23470 1445 aa10.1□□□□□ -0.79
NPHP3-208ENST00000490993 SUPT6HQ7KZ85 1726 aaKnown RBP10.1□□□□□ -0.79
NPHP3-208ENST00000490993 MAGI1Q96QZ7 1491 aaPredicted RBP10.09□□□□□ -0.79
NPHP3-208ENST00000490993 THOC2Q8NI27 1593 aaKnown RBP10.09□□□□□ -0.79
NPHP3-208ENST00000490993 CTTNBP2Q8WZ74 1663 aa10.09□□□□□ -0.79
NPHP3-208ENST00000490993 UACAQ9BZF9 1416 aa10.09□□□□□ -0.79
NPHP3-208ENST00000490993 DNAJC5BQ9UF47 199 aa10.08□□□□□ -0.8
NPHP3-208ENST00000490993 CNGB1Q14028 1251 aaPredicted RBP10.08□□□□□ -0.8
NPHP3-208ENST00000490993 SYNJ2O15056 1496 aa10.07□□□□□ -0.8
NPHP3-208ENST00000490993 SCAF1Q9H7N4 1312 aaKnown RBP10.07□□□□□ -0.8
NPHP3-208ENST00000490993 GRIN2AQ12879 1464 aa10.05□□□□□ -0.8
NPHP3-208ENST00000490993 EPRSP07814 1512 aaKnown RBP10.05□□□□□ -0.8
NPHP3-208ENST00000490993 HIRIP3Q9BW71 556 aaPredicted RBP10.05□□□□□ -0.8
NPHP3-208ENST00000490993 HFM1A2PYH4 1435 aa10.05□□□□□ -0.8
NPHP3-208ENST00000490993 KIF21AQ7Z4S6 1674 aa10.04□□□□□ -0.8
NPHP3-208ENST00000490993 CCER2I3L3R5 266 aa10.04□□□□□ -0.8
NPHP3-208ENST00000490993 ERICH6Q7L0X2 663 aa10.04□□□□□ -0.8
NPHP3-208ENST00000490993 EFCAB2Q5VUJ9 269 aa10.04□□□□□ -0.8
NPHP3-208ENST00000490993 KDM2AQ9Y2K7 1162 aa10.04□□□□□ -0.8
NPHP3-208ENST00000490993 WDR97A6NE52 1622 aa10.03□□□□□ -0.8
NPHP3-208ENST00000490993 ABCA5Q8WWZ7 1642 aa10.03□□□□□ -0.8
NPHP3-208ENST00000490993 PKD2Q13563 968 aa10.02□□□□□ -0.8
NPHP3-208ENST00000490993 CFAP43Q8NDM7 1665 aa10.02□□□□□ -0.81
NPHP3-208ENST00000490993 TROQ12816 1431 aaPredicted RBP10.02□□□□□ -0.81
NPHP3-208ENST00000490993 ADAMTS12P58397 1594 aa10.02□□□□□ -0.81
NPHP3-208ENST00000490993 NUP155O75694 1391 aa10.01□□□□□ -0.81
NPHP3-208ENST00000490993 HNRNPUQ00839 825 aaKnown RBP eCLIP10.01□□□□□ -0.81
NPHP3-208ENST00000490993 WDR62O43379 1518 aa10□□□□□ -0.81
NPHP3-208ENST00000490993 ZNF608Q9ULD9 1512 aaPredicted RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms