RNA–Protein interactions for RNA: ENST00000483407.1

CSDE1-207, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 741 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-207ENST00000483407 CCDC88BA6NC98 1476 aa10.86□□□□□ -0.67
CSDE1-207ENST00000483407 MKRN4PQ13434 485 aaPredicted RBP10.85□□□□□ -0.67
CSDE1-207ENST00000483407 IFT140Q96RY7 1462 aa10.85□□□□□ -0.67
CSDE1-207ENST00000483407 ABCC8Q09428 1581 aa10.82□□□□□ -0.68
CSDE1-207ENST00000483407 SPDYE4A6NLX3 237 aa10.81□□□□□ -0.68
CSDE1-207ENST00000483407 TOPBP1Q92547 1522 aa10.8□□□□□ -0.68
CSDE1-207ENST00000483407 ZNF608Q9ULD9 1512 aaPredicted RBP10.8□□□□□ -0.68
CSDE1-207ENST00000483407 POLA2Q14181 598 aa10.8□□□□□ -0.68
CSDE1-207ENST00000483407 PRDM2Q13029 1718 aa10.78□□□□□ -0.68
CSDE1-207ENST00000483407 FBLN2P98095 1184 aa10.78□□□□□ -0.68
CSDE1-207ENST00000483407 AKT1S1Q96B36 256 aa10.78□□□□□ -0.68
CSDE1-207ENST00000483407 PROM2Q8N271 834 aa10.76□□□□□ -0.69
CSDE1-207ENST00000483407 DNMBPQ6XZF7 1577 aa10.75□□□□□ -0.69
CSDE1-207ENST00000483407 FBXO3Q9UK99 471 aa10.74□□□□□ -0.69
CSDE1-207ENST00000483407 HAX1O00165 279 aa10.73□□□□□ -0.69
CSDE1-207ENST00000483407 RIMBP3CA6NJZ7 1639 aa10.73□□□□□ -0.69
CSDE1-207ENST00000483407 RIMBP3BA6NNM3 1639 aa10.73□□□□□ -0.69
CSDE1-207ENST00000483407 RIMBP3Q9UFD9 1639 aa10.73□□□□□ -0.69
CSDE1-207ENST00000483407 SLC24A1O60721 1099 aa10.72□□□□□ -0.69
CSDE1-207ENST00000483407 AQRO60306 1485 aaKnown RBP eCLIP10.72□□□□□ -0.693e-8■■■■□ 24.7
CSDE1-207ENST00000483407 ARHGEF11O15085 1522 aa10.72□□□□□ -0.69
CSDE1-207ENST00000483407 EIF4G3O43432 1585 aaKnown RBP10.72□□□□□ -0.69
CSDE1-207ENST00000483407 PIP4P2Q8N4L2 257 aa10.71□□□□□ -0.69
CSDE1-207ENST00000483407 CYB5RLQ6IPT4 315 aa10.7□□□□□ -0.7
CSDE1-207ENST00000483407 POLA1P09884 1462 aaPredicted RBP10.69□□□□□ -0.7
CSDE1-207ENST00000483407 SOGA1O94964 1423 aa10.67□□□□□ -0.7
CSDE1-207ENST00000483407 TARBP1Q13395 1621 aaKnown RBP10.67□□□□□ -0.7
CSDE1-207ENST00000483407 TDRD9Q8NDG6 1382 aaKnown RBP10.65□□□□□ -0.7
CSDE1-207ENST00000483407 ZBTB12Q9Y330 459 aaPredicted RBP10.65□□□□□ -0.7
CSDE1-207ENST00000483407 RAD54L2Q9Y4B4 1467 aa10.65□□□□□ -0.7
CSDE1-207ENST00000483407 CHMP7Q8WUX9 453 aaPredicted RBP10.62□□□□□ -0.71
CSDE1-207ENST00000483407 FGD5Q6ZNL6 1462 aa10.61□□□□□ -0.71
CSDE1-207ENST00000483407 REM2Q8IYK8 340 aaPredicted RBP10.61□□□□□ -0.71
CSDE1-207ENST00000483407 CHD1O14646 1710 aa10.61□□□□□ -0.71
CSDE1-207ENST00000483407 SNAPC4Q5SXM2 1469 aa10.61□□□□□ -0.71
CSDE1-207ENST00000483407 ARAP1Q96P48 1450 aa10.61□□□□□ -0.71
CSDE1-207ENST00000483407 WDR97A6NE52 1622 aa10.6□□□□□ -0.71
CSDE1-207ENST00000483407 GRIN2BQ13224 1484 aa10.58□□□□□ -0.72
CSDE1-207ENST00000483407 MAGI1Q96QZ7 1491 aaPredicted RBP10.58□□□□□ -0.72
CSDE1-207ENST00000483407 FXR2P51116 673 aaKnown RBP eCLIP10.58□□□□□ -0.72
CSDE1-207ENST00000483407 CUX1P39880 1505 aa10.58□□□□□ -0.72
CSDE1-207ENST00000483407 VASPP50552 380 aaPredicted RBP10.57□□□□□ -0.72
CSDE1-207ENST00000483407 SYNJ1O43426 1573 aa10.56□□□□□ -0.72
CSDE1-207ENST00000483407 SYNJ2O15056 1496 aa10.55□□□□□ -0.72
CSDE1-207ENST00000483407 CLASP1Q7Z460 1538 aa10.53□□□□□ -0.72
CSDE1-207ENST00000483407 GAPVD1Q14C86 1478 aa10.53□□□□□ -0.72
CSDE1-207ENST00000483407 SUPT5HO00267 1087 aaKnown RBP10.52□□□□□ -0.73
CSDE1-207ENST00000483407 ABCA10Q8WWZ4 1543 aa10.5□□□□□ -0.73
CSDE1-207ENST00000483407 IFNLR1Q8IU57 520 aaPredicted RBP10.49□□□□□ -0.73
CSDE1-207ENST00000483407 WRNQ14191 1432 aaPredicted RBP eCLIP10.47□□□□□ -0.73
CSDE1-207ENST00000483407 PITPNM1O00562 1244 aa10.46□□□□□ -0.73
CSDE1-207ENST00000483407 EVX2Q03828 476 aa10.45□□□□□ -0.74
CSDE1-207ENST00000483407 PBRM1Q86U86 1689 aa10.44□□□□□ -0.74
CSDE1-207ENST00000483407 ABCA5Q8WWZ7 1642 aa10.44□□□□□ -0.74
CSDE1-207ENST00000483407 GRIN2AQ12879 1464 aa10.43□□□□□ -0.74
CSDE1-207ENST00000483407 LHX8Q68G74 356 aa10.43□□□□□ -0.74
CSDE1-207ENST00000483407 ZNF692Q9BU19 519 aaPredicted RBP10.43□□□□□ -0.74
CSDE1-207ENST00000483407 SPDYE2BA6NHP3 402 aa10.41□□□□□ -0.74
CSDE1-207ENST00000483407 SPDYE6P0CI01 402 aa10.41□□□□□ -0.74
CSDE1-207ENST00000483407 SPDYE2Q495Y8 402 aa10.41□□□□□ -0.74
CSDE1-207ENST00000483407 ILDR1Q86SU0 546 aaPredicted RBP10.41□□□□□ -0.74
CSDE1-207ENST00000483407 FHAD1B1AJZ9 1412 aa10.41□□□□□ -0.74
CSDE1-207ENST00000483407 NUP160Q12769 1436 aa10.41□□□□□ -0.74
CSDE1-207ENST00000483407 SSUH2Q9Y2M2 353 aa10.39□□□□□ -0.75
CSDE1-207ENST00000483407 ADAMTS12P58397 1594 aa10.39□□□□□ -0.75
CSDE1-207ENST00000483407 TOP2BQ02880 1626 aa10.38□□□□□ -0.75
CSDE1-207ENST00000483407 ERICH3Q5RHP9 1530 aa10.36□□□□□ -0.75
CSDE1-207ENST00000483407 BIVM-ERCC5R4GMW8 1640 aa10.36□□□□□ -0.75
CSDE1-207ENST00000483407 CEP170Q5SW79 1584 aa10.35□□□□□ -0.75
CSDE1-207ENST00000483407 STAG3Q9UJ98 1225 aa10.35□□□□□ -0.75
CSDE1-207ENST00000483407 ERCC6L2Q5T890 1561 aa10.35□□□□□ -0.75
CSDE1-207ENST00000483407 JPH4Q96JJ6 628 aa10.33□□□□□ -0.76
CSDE1-207ENST00000483407 PRG4Q92954 1404 aaPredicted RBP10.32□□□□□ -0.76
CSDE1-207ENST00000483407 PKD2Q13563 968 aa10.31□□□□□ -0.76
CSDE1-207ENST00000483407 SHROOM2Q13796 1616 aa10.31□□□□□ -0.76
CSDE1-207ENST00000483407 NPM1P06748 294 aaKnown RBP eCLIP10.29□□□□□ -0.76
CSDE1-207ENST00000483407 PLSCR2Q9NRY7 297 aa10.27□□□□□ -0.77
CSDE1-207ENST00000483407 C19orf67A6NJJ6 358 aa10.26□□□□□ -0.77
CSDE1-207ENST00000483407 SPOCK2Q92563 424 aa10.26□□□□□ -0.77
CSDE1-207ENST00000483407 GABBR2O75899 941 aa10.25□□□□□ -0.77
CSDE1-207ENST00000483407 KLHL34Q8N239 644 aa10.25□□□□□ -0.77
CSDE1-207ENST00000483407 KIF27Q86VH2 1401 aa10.24□□□□□ -0.77
CSDE1-207ENST00000483407 FAM69CQ0P6D2 419 aa10.24□□□□□ -0.77
CSDE1-207ENST00000483407 RUSC2Q8N2Y8 1516 aa10.23□□□□□ -0.77
CSDE1-207ENST00000483407 IGF1RP08069 1367 aa10.23□□□□□ -0.77
CSDE1-207ENST00000483407 KIAA0586Q9BVV6 1533 aa10.23□□□□□ -0.77
CSDE1-207ENST00000483407 PLCB2Q00722 1185 aa10.22□□□□□ -0.77
CSDE1-207ENST00000483407 PLCD3Q8N3E9 789 aa10.21□□□□□ -0.77
CSDE1-207ENST00000483407 ABCC10Q5T3U5 1492 aa10.21□□□□□ -0.78
CSDE1-207ENST00000483407 PRKAR2AP13861 404 aaKnown RBP10.2□□□□□ -0.78
CSDE1-207ENST00000483407 MAPKBP1O60336 1514 aa10.19□□□□□ -0.78
CSDE1-207ENST00000483407 MIER1Q8N108 512 aa10.19□□□□□ -0.78
CSDE1-207ENST00000483407 CARMIL1Q5VZK9 1371 aa10.18□□□□□ -0.78
CSDE1-207ENST00000483407 CUL7Q14999 1698 aa10.17□□□□□ -0.78
CSDE1-207ENST00000483407 PTPRGP23470 1445 aa10.16□□□□□ -0.78
CSDE1-207ENST00000483407 KIF13AQ9H1H9 1805 aa10.16□□□□□ -0.78
CSDE1-207ENST00000483407 CARMIL2Q6F5E8 1435 aa10.16□□□□□ -0.78
CSDE1-207ENST00000483407 ADCY10Q96PN6 1610 aa10.15□□□□□ -0.78
CSDE1-207ENST00000483407 TTBK1Q5TCY1 1321 aaPredicted RBP10.15□□□□□ -0.78
CSDE1-207ENST00000483407 TNIKQ9UKE5 1360 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms