RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 TOPBP1Q92547 1522 aa7.67□□□□□ -1.18
VPS13D-208ENST00000481484 EIF4G3O43432 1585 aaKnown RBP7.66□□□□□ -1.18
VPS13D-208ENST00000481484 TARBP1Q13395 1621 aaKnown RBP7.63□□□□□ -1.19
VPS13D-208ENST00000481484 FBLN2P98095 1184 aa7.61□□□□□ -1.19
VPS13D-208ENST00000481484 MKRN4PQ13434 485 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-208ENST00000481484 OSCARQ8IYS5 282 aa7.6□□□□□ -1.19
VPS13D-208ENST00000481484 CHD1O14646 1710 aa7.6□□□□□ -1.19
VPS13D-208ENST00000481484 POLA1P09884 1462 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-208ENST00000481484 ZNF608Q9ULD9 1512 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-208ENST00000481484 AKT1S1Q96B36 256 aa7.56□□□□□ -1.2
VPS13D-208ENST00000481484 PBRM1Q86U86 1689 aa7.55□□□□□ -1.2
VPS13D-208ENST00000481484 RIMBP3CA6NJZ7 1639 aa7.55□□□□□ -1.2
VPS13D-208ENST00000481484 RIMBP3BA6NNM3 1639 aa7.55□□□□□ -1.2
VPS13D-208ENST00000481484 RIMBP3Q9UFD9 1639 aa7.55□□□□□ -1.2
VPS13D-208ENST00000481484 FGD5Q6ZNL6 1462 aa7.54□□□□□ -1.2
VPS13D-208ENST00000481484 MAGI1Q96QZ7 1491 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-208ENST00000481484 CUX1P39880 1505 aa7.53□□□□□ -1.2
VPS13D-208ENST00000481484 ARHGEF11O15085 1522 aa7.52□□□□□ -1.2
VPS13D-208ENST00000481484 ABCA5Q8WWZ7 1642 aa7.52□□□□□ -1.2
VPS13D-208ENST00000481484 BIVM-ERCC5R4GMW8 1640 aa7.52□□□□□ -1.2
VPS13D-208ENST00000481484 SYNJ1O43426 1573 aa7.52□□□□□ -1.21
VPS13D-208ENST00000481484 SPDYE2BA6NHP3 402 aa7.52□□□□□ -1.21
VPS13D-208ENST00000481484 SPDYE6P0CI01 402 aa7.52□□□□□ -1.21
VPS13D-208ENST00000481484 SPDYE2Q495Y8 402 aa7.52□□□□□ -1.21
VPS13D-208ENST00000481484 CLASP1Q7Z460 1538 aa7.5□□□□□ -1.21
VPS13D-208ENST00000481484 GRIN2BQ13224 1484 aa7.49□□□□□ -1.21
VPS13D-208ENST00000481484 TOP2BQ02880 1626 aa7.49□□□□□ -1.21
VPS13D-208ENST00000481484 ABCA10Q8WWZ4 1543 aa7.49□□□□□ -1.21
VPS13D-208ENST00000481484 SNAPC4Q5SXM2 1469 aa7.49□□□□□ -1.21
VPS13D-208ENST00000481484 SOGA1O94964 1423 aa7.48□□□□□ -1.21
VPS13D-208ENST00000481484 REM2Q8IYK8 340 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-208ENST00000481484 SYNJ2O15056 1496 aa7.48□□□□□ -1.21
VPS13D-208ENST00000481484 AQRO60306 1485 aaKnown RBP eCLIP7.47□□□□□ -1.212e-6■■■■□ 22.3
VPS13D-208ENST00000481484 RAD54L2Q9Y4B4 1467 aa7.47□□□□□ -1.21
VPS13D-208ENST00000481484 ADAMTS12P58397 1594 aa7.46□□□□□ -1.21
VPS13D-208ENST00000481484 ZNF692Q9BU19 519 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-208ENST00000481484 SSUH2Q9Y2M2 353 aa7.46□□□□□ -1.22
VPS13D-208ENST00000481484 GAPVD1Q14C86 1478 aa7.45□□□□□ -1.22
VPS13D-208ENST00000481484 POTEHQ6S545 545 aa7.44□□□□□ -1.22
VPS13D-208ENST00000481484 CHRDL2Q6WN34 429 aa7.44□□□□□ -1.22
VPS13D-208ENST00000481484 WRNQ14191 1432 aaPredicted RBP eCLIP7.44□□□□□ -1.22
VPS13D-208ENST00000481484 ARAP1Q96P48 1450 aa7.43□□□□□ -1.22
VPS13D-208ENST00000481484 ERICH3Q5RHP9 1530 aa7.43□□□□□ -1.22
VPS13D-208ENST00000481484 TRIM41Q8WV44 630 aa7.43□□□□□ -1.22
VPS13D-208ENST00000481484 TDRD9Q8NDG6 1382 aaKnown RBP7.42□□□□□ -1.22
VPS13D-208ENST00000481484 GRIN2AQ12879 1464 aa7.4□□□□□ -1.22
VPS13D-208ENST00000481484 SHROOM2Q13796 1616 aa7.4□□□□□ -1.22
VPS13D-208ENST00000481484 CUL7Q14999 1698 aa7.39□□□□□ -1.23
VPS13D-208ENST00000481484 PITPNM1O00562 1244 aa7.38□□□□□ -1.23
VPS13D-208ENST00000481484 FHAD1B1AJZ9 1412 aa7.37□□□□□ -1.23
VPS13D-208ENST00000481484 NUP160Q12769 1436 aa7.37□□□□□ -1.23
VPS13D-208ENST00000481484 RUSC2Q8N2Y8 1516 aa7.37□□□□□ -1.23
VPS13D-208ENST00000481484 SUPT5HO00267 1087 aaKnown RBP7.36□□□□□ -1.23
VPS13D-208ENST00000481484 CHMP7Q8WUX9 453 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-208ENST00000481484 CEP170Q5SW79 1584 aa7.36□□□□□ -1.23
VPS13D-208ENST00000481484 SPDYE1Q8NFV5 336 aaPredicted RBP7.33□□□□□ -1.24
VPS13D-208ENST00000481484 SPDYE4A6NLX3 237 aa7.32□□□□□ -1.24
VPS13D-208ENST00000481484 FXR2P51116 673 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS13D-208ENST00000481484 PIP4P2Q8N4L2 257 aa7.31□□□□□ -1.24
VPS13D-208ENST00000481484 KIF27Q86VH2 1401 aa7.29□□□□□ -1.24
VPS13D-208ENST00000481484 CYB5RLQ6IPT4 315 aa7.29□□□□□ -1.24
VPS13D-208ENST00000481484 CLEC11AQ9Y240 323 aa7.28□□□□□ -1.24
VPS13D-208ENST00000481484 ERCC6L2Q5T890 1561 aa7.27□□□□□ -1.25
VPS13D-208ENST00000481484 KIF13AQ9H1H9 1805 aa7.27□□□□□ -1.25
VPS13D-208ENST00000481484 MAPKBP1O60336 1514 aa7.26□□□□□ -1.25
VPS13D-208ENST00000481484 KIAA0586Q9BVV6 1533 aa7.25□□□□□ -1.25
VPS13D-208ENST00000481484 IQGAP2Q13576 1575 aa7.25□□□□□ -1.25
VPS13D-208ENST00000481484 CTTNBP2Q8WZ74 1663 aa7.24□□□□□ -1.25
VPS13D-208ENST00000481484 PRG4Q92954 1404 aaPredicted RBP7.23□□□□□ -1.25
VPS13D-208ENST00000481484 ADCY10Q96PN6 1610 aa7.23□□□□□ -1.25
VPS13D-208ENST00000481484 PRR29P0C7W0 189 aa7.22□□□□□ -1.25
VPS13D-208ENST00000481484 PROM2Q8N271 834 aa7.22□□□□□ -1.25
VPS13D-208ENST00000481484 DIP2BQ9P265 1576 aa7.21□□□□□ -1.25
VPS13D-208ENST00000481484 STAG3Q9UJ98 1225 aa7.2□□□□□ -1.26
VPS13D-208ENST00000481484 CARMIL2Q6F5E8 1435 aa7.19□□□□□ -1.26
VPS13D-208ENST00000481484 PRKAR2AP13861 404 aaKnown RBP7.19□□□□□ -1.26
VPS13D-208ENST00000481484 IGF1RP08069 1367 aa7.19□□□□□ -1.26
VPS13D-208ENST00000481484 UGGT2Q9NYU1 1516 aa7.18□□□□□ -1.26
VPS13D-208ENST00000481484 ABCC10Q5T3U5 1492 aa7.17□□□□□ -1.26
VPS13D-208ENST00000481484 RAPGEF2Q9Y4G8 1499 aa7.17□□□□□ -1.26
VPS13D-208ENST00000481484 KIAA0556O60303 1618 aa7.17□□□□□ -1.26
VPS13D-208ENST00000481484 CARMIL1Q5VZK9 1371 aa7.17□□□□□ -1.26
VPS13D-208ENST00000481484 JPH4Q96JJ6 628 aa7.16□□□□□ -1.26
VPS13D-208ENST00000481484 UHRF1BP1LA0JNW5 1464 aa7.16□□□□□ -1.26
VPS13D-208ENST00000481484 ABCC2Q92887 1545 aa7.16□□□□□ -1.26
VPS13D-208ENST00000481484 GLI2P10070 1586 aa7.14□□□□□ -1.27
VPS13D-208ENST00000481484 GOLGA3Q08378 1498 aa7.14□□□□□ -1.27
VPS13D-208ENST00000481484 CHADLQ6NUI6 762 aa7.14□□□□□ -1.27
VPS13D-208ENST00000481484 TNIKQ9UKE5 1360 aa7.14□□□□□ -1.27
VPS13D-208ENST00000481484 KDM6BO15054 1643 aa7.13□□□□□ -1.27
VPS13D-208ENST00000481484 DISP1Q96F81 1524 aa7.13□□□□□ -1.27
VPS13D-208ENST00000481484 PLB1Q6P1J6 1458 aa7.12□□□□□ -1.27
VPS13D-208ENST00000481484 FKBP8Q14318 412 aa7.12□□□□□ -1.27
VPS13D-208ENST00000481484 ZCCHC11Q5TAX3 1644 aaKnown RBP7.12□□□□□ -1.27
VPS13D-208ENST00000481484 PTPRGP23470 1445 aa7.11□□□□□ -1.27
VPS13D-208ENST00000481484 TSPOAP1O95153 1857 aa7.11□□□□□ -1.27
VPS13D-208ENST00000481484 HAX1O00165 279 aa7.11□□□□□ -1.27
VPS13D-208ENST00000481484 NPM1P06748 294 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS13D-208ENST00000481484 MAP3K4Q9Y6R4 1608 aa7.11□□□□□ -1.27
VPS13D-208ENST00000481484 KDM5BQ9UGL1 1544 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms