RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 AEBP2Q6ZN18 517 aaPredicted RBP13.61□□□□□ -0.23
VPS13D-208ENST00000481484 CHIC1Q5VXU3 224 aa13.1□□□□□ -0.31
VPS13D-208ENST00000481484 SENP3Q9H4L4 574 aaPredicted RBP11.56□□□□□ -0.56
VPS13D-208ENST00000481484 PHF23Q9BUL5 403 aaPredicted RBP11.51□□□□□ -0.57
VPS13D-208ENST00000481484 FOXD1Q16676 465 aa10.77□□□□□ -0.69
VPS13D-208ENST00000481484 PLPPR3Q6T4P5 718 aa10.54□□□□□ -0.72
VPS13D-208ENST00000481484 NISCHQ9Y2I1 1504 aa10.43□□□□□ -0.74
VPS13D-208ENST00000481484 PPP6R1Q9UPN7 881 aa10.22□□□□□ -0.77
VPS13D-208ENST00000481484 ADRA2BP18089 450 aa10.17□□□□□ -0.78
VPS13D-208ENST00000481484 PIAS4Q8N2W9 510 aaPredicted RBP10.06□□□□□ -0.8
VPS13D-208ENST00000481484 MSH5O43196 834 aa10□□□□□ -0.81
VPS13D-208ENST00000481484 CCDC180Q9P1Z9 1646 aa9.51□□□□□ -0.89
VPS13D-208ENST00000481484 POTEDQ86YR6 584 aa9.45□□□□□ -0.9
VPS13D-208ENST00000481484 SCAF1Q9H7N4 1312 aaKnown RBP9.31□□□□□ -0.92
VPS13D-208ENST00000481484 MAPK8IP2Q13387 824 aaPredicted RBP9.3□□□□□ -0.92
VPS13D-208ENST00000481484 PPP4R3CPQ6ZMV5 832 aa9.26□□□□□ -0.93
VPS13D-208ENST00000481484 DMRT2Q9Y5R5 561 aa9.22□□□□□ -0.93
VPS13D-208ENST00000481484 ABCC9O60706 1549 aa9.21□□□□□ -0.93
VPS13D-208ENST00000481484 CNKSR2Q8WXI2 1034 aa9.05□□□□□ -0.96
VPS13D-208ENST00000481484 HOXD11P31277 338 aaPredicted RBP8.96□□□□□ -0.98
VPS13D-208ENST00000481484 NCBP3Q53F19 620 aaKnown RBP8.95□□□□□ -0.98
VPS13D-208ENST00000481484 RB1CC1Q8TDY2 1594 aa8.95□□□□□ -0.98
VPS13D-208ENST00000481484 RNF216Q9NWF9 866 aaPredicted RBP8.93□□□□□ -0.98
VPS13D-208ENST00000481484 NACADO15069 1562 aa8.9□□□□□ -0.99
VPS13D-208ENST00000481484 MYO15BQ96JP2 1530 aa8.84□□□□□ -0.99
VPS13D-208ENST00000481484 NPM3O75607 178 aaKnown RBP8.83□□□□□ -1
VPS13D-208ENST00000481484 KCNA4P22459 653 aa8.81□□□□□ -1
VPS13D-208ENST00000481484 UNC13AQ9UPW8 1703 aa8.75□□□□□ -1.01
VPS13D-208ENST00000481484 DCAF8L1A6NGE4 600 aa8.75□□□□□ -1.01
VPS13D-208ENST00000481484 DCAF1Q9Y4B6 1507 aa8.73□□□□□ -1.01
VPS13D-208ENST00000481484 ZCCHC6Q5VYS8 1495 aaKnown RBP8.7□□□□□ -1.02
VPS13D-208ENST00000481484 SHROOM4Q9ULL8 1493 aa8.7□□□□□ -1.02
VPS13D-208ENST00000481484 DNAJC5BQ9UF47 199 aa8.67□□□□□ -1.02
VPS13D-208ENST00000481484 BICRAQ9NZM4 1560 aa8.61□□□□□ -1.03
VPS13D-208ENST00000481484 RNF39Q9H2S5 420 aa8.56□□□□□ -1.04
VPS13D-208ENST00000481484 DCAF8L2P0C7V8 631 aa8.52□□□□□ -1.05
VPS13D-208ENST00000481484 SCRIBQ14160 1630 aa8.51□□□□□ -1.05
VPS13D-208ENST00000481484 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.49□□□□□ -1.05
VPS13D-208ENST00000481484 C1QBPQ07021 282 aaKnown RBP8.45□□□□□ -1.06
VPS13D-208ENST00000481484 PABPN1Q86U42 306 aaKnown RBP eCLIP8.45□□□□□ -1.06
VPS13D-208ENST00000481484 CACNB1Q02641 598 aaPredicted RBP8.44□□□□□ -1.06
VPS13D-208ENST00000481484 EIF4G1Q04637 1599 aaKnown RBP8.43□□□□□ -1.06
VPS13D-208ENST00000481484 CC2D2AQ9P2K1 1620 aa8.41□□□□□ -1.06
VPS13D-208ENST00000481484 SLC4A2P04920 1241 aa8.4□□□□□ -1.06
VPS13D-208ENST00000481484 CECR2Q9BXF3 1484 aa8.34□□□□□ -1.07
VPS13D-208ENST00000481484 SLC4A1APQ9BWU0 796 aaKnown RBP8.34□□□□□ -1.07
VPS13D-208ENST00000481484 U3KPZ7 1027 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-208ENST00000481484 HMGXB3Q12766 1538 aa8.19□□□□□ -1.1
VPS13D-208ENST00000481484 SMARCA2P51531 1590 aa8.18□□□□□ -1.1
VPS13D-208ENST00000481484 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-208ENST00000481484 HNRNPUL2Q1KMD3 747 aaKnown RBP8.18□□□□□ -1.1
VPS13D-208ENST00000481484 SMARCA4P51532 1647 aa8.18□□□□□ -1.1
VPS13D-208ENST00000481484 FOXD4L1Q9NU39 408 aa8.17□□□□□ -1.1
VPS13D-208ENST00000481484 SPINK5Q9NQ38 1064 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-208ENST00000481484 BAZ1AQ9NRL2 1556 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-208ENST00000481484 MYCNP04198 464 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-208ENST00000481484 PEG3Q9GZU2 1588 aa8.14□□□□□ -1.11
VPS13D-208ENST00000481484 SAMD1Q6SPF0 538 aaPredicted RBP8.14□□□□□ -1.11
VPS13D-208ENST00000481484 NCAPD3P42695 1498 aa8.13□□□□□ -1.11
VPS13D-208ENST00000481484 APLP2Q06481 763 aa8.12□□□□□ -1.11
VPS13D-208ENST00000481484 ZBTB22O15209 634 aa8.11□□□□□ -1.11
VPS13D-208ENST00000481484 CAPN15O75808 1086 aa8.11□□□□□ -1.11
VPS13D-208ENST00000481484 ATAD2BQ9ULI0 1458 aa8.11□□□□□ -1.11
VPS13D-208ENST00000481484 DSG3P32926 999 aa8.08□□□□□ -1.12
VPS13D-208ENST00000481484 CUX2O14529 1486 aa8.06□□□□□ -1.12
VPS13D-208ENST00000481484 BAZ1BQ9UIG0 1483 aaKnown RBP8.06□□□□□ -1.12
VPS13D-208ENST00000481484 ZNF219Q9P2Y4 722 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-208ENST00000481484 LAMC3Q9Y6N6 1575 aa8.03□□□□□ -1.12
VPS13D-208ENST00000481484 TRHP20396 242 aaPredicted RBP8.03□□□□□ -1.12
VPS13D-208ENST00000481484 ERCC6Q03468 1493 aa8.02□□□□□ -1.13
VPS13D-208ENST00000481484 MROH2BQ7Z745 1585 aa7.98□□□□□ -1.13
VPS13D-208ENST00000481484 THOC2Q8NI27 1593 aaKnown RBP7.98□□□□□ -1.13
VPS13D-208ENST00000481484 ATF5Q9Y2D1 282 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-208ENST00000481484 KIF21AQ7Z4S6 1674 aa7.95□□□□□ -1.14
VPS13D-208ENST00000481484 ABCB7O75027 752 aa7.94□□□□□ -1.14
VPS13D-208ENST00000481484 PRDM2Q13029 1718 aa7.93□□□□□ -1.14
VPS13D-208ENST00000481484 ATXN8OSP0DMR3 200 aa7.93□□□□□ -1.14
VPS13D-208ENST00000481484 PDS5BQ9NTI5 1447 aa7.92□□□□□ -1.14
VPS13D-208ENST00000481484 WIZO95785 1651 aa7.92□□□□□ -1.14
VPS13D-208ENST00000481484 CSRNP3Q8WYN3 585 aa7.91□□□□□ -1.14
VPS13D-208ENST00000481484 NESP48681 1621 aa7.91□□□□□ -1.14
VPS13D-208ENST00000481484 TOP2AP11388 1531 aaKnown RBP7.89□□□□□ -1.15
VPS13D-208ENST00000481484 POLA2Q14181 598 aa7.89□□□□□ -1.15
VPS13D-208ENST00000481484 WDR62O43379 1518 aa7.88□□□□□ -1.15
VPS13D-208ENST00000481484 MRC2Q9UBG0 1479 aa7.86□□□□□ -1.15
VPS13D-208ENST00000481484 CADPSQ9ULU8 1353 aa7.85□□□□□ -1.15
VPS13D-208ENST00000481484 CEP164Q9UPV0 1460 aa7.84□□□□□ -1.15
VPS13D-208ENST00000481484 EHMT2Q96KQ7 1210 aa7.83□□□□□ -1.16
VPS13D-208ENST00000481484 RSF1Q96T23 1441 aaPredicted RBP7.82□□□□□ -1.16
VPS13D-208ENST00000481484 DNAJC5Q9H3Z4 198 aa7.82□□□□□ -1.16
VPS13D-208ENST00000481484 CFTRP13569 1480 aa7.81□□□□□ -1.16
VPS13D-208ENST00000481484 FANCD2Q9BXW9 1451 aa7.8□□□□□ -1.16
VPS13D-208ENST00000481484 ZBTB12Q9Y330 459 aaPredicted RBP7.74□□□□□ -1.17
VPS13D-208ENST00000481484 URB2Q14146 1524 aaKnown RBP7.72□□□□□ -1.17
VPS13D-208ENST00000481484 ABCC8Q09428 1581 aa7.71□□□□□ -1.17
VPS13D-208ENST00000481484 DNMBPQ6XZF7 1577 aa7.7□□□□□ -1.18
VPS13D-208ENST00000481484 CCDC88BA6NC98 1476 aa7.69□□□□□ -1.18
VPS13D-208ENST00000481484 WDR97A6NE52 1622 aa7.69□□□□□ -1.18
VPS13D-208ENST00000481484 IFT140Q96RY7 1462 aa7.68□□□□□ -1.18
VPS13D-208ENST00000481484 RBM42Q9BTD8 480 aaKnown RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms