RNA–Protein interactions for RNA: ENST00000470951.5

SRGAP3-204, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 2,334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-204ENST00000470951 CFTRP13569 1480 aa16.27■□□□□ 0.2
SRGAP3-204ENST00000470951 BIVM-ERCC5R4GMW8 1640 aa16.27■□□□□ 0.19
SRGAP3-204ENST00000470951 LAMC3Q9Y6N6 1575 aa16.27■□□□□ 0.19
SRGAP3-204ENST00000470951 TSHZ2Q9NRE2 1034 aa16.27■□□□□ 0.19
SRGAP3-204ENST00000470951 ARAP1Q96P48 1450 aa16.25■□□□□ 0.19
SRGAP3-204ENST00000470951 PRXQ9BXM0 1461 aa16.25■□□□□ 0.19
SRGAP3-204ENST00000470951 RANGAP1P46060 587 aaPredicted RBP16.19■□□□□ 0.18
SRGAP3-204ENST00000470951 ERCC6Q03468 1493 aa16.17■□□□□ 0.18
SRGAP3-204ENST00000470951 PDS5BQ9NTI5 1447 aa16.17■□□□□ 0.18
SRGAP3-204ENST00000470951 KIF21AQ7Z4S6 1674 aa16.16■□□□□ 0.18
SRGAP3-204ENST00000470951 CCNB3Q8WWL7 1395 aa16.16■□□□□ 0.18
SRGAP3-204ENST00000470951 FANCD2Q9BXW9 1451 aa16.15■□□□□ 0.18
SRGAP3-204ENST00000470951 KANK4Q5T7N3 995 aaPredicted RBP16.13■□□□□ 0.17
SRGAP3-204ENST00000470951 PRDM2Q13029 1718 aa16.13■□□□□ 0.17
SRGAP3-204ENST00000470951 HOMEZQ8IX15 550 aa16.13■□□□□ 0.17
SRGAP3-204ENST00000470951 MAP3K1Q13233 1512 aa16.09■□□□□ 0.17
SRGAP3-204ENST00000470951 MAPKBP1O60336 1514 aa16.08■□□□□ 0.17
SRGAP3-204ENST00000470951 TPRNQ4KMQ1 711 aa16.06■□□□□ 0.16
SRGAP3-204ENST00000470951 KIF27Q86VH2 1401 aa16.05■□□□□ 0.16
SRGAP3-204ENST00000470951 UBE2Q2Q8WVN8 375 aa16.05■□□□□ 0.16
SRGAP3-204ENST00000470951 RAB3GAP2Q9H2M9 1393 aa16.04■□□□□ 0.16
SRGAP3-204ENST00000470951 BCANQ96GW7 911 aa16.04■□□□□ 0.16
SRGAP3-204ENST00000470951 ARHGAP35Q9NRY4 1499 aa16.04■□□□□ 0.16
SRGAP3-204ENST00000470951 KLHL34Q8N239 644 aa16.02■□□□□ 0.15
SRGAP3-204ENST00000470951 SETD5Q9C0A6 1442 aa16■□□□□ 0.15
SRGAP3-204ENST00000470951 TIAM1Q13009 1591 aa16■□□□□ 0.15
SRGAP3-204ENST00000470951 THOC2Q8NI27 1593 aaKnown RBP15.99■□□□□ 0.15
SRGAP3-204ENST00000470951 MRC2Q9UBG0 1479 aa15.99■□□□□ 0.15
SRGAP3-204ENST00000470951 URB2Q14146 1524 aaKnown RBP15.99■□□□□ 0.15
SRGAP3-204ENST00000470951 CCER2I3L3R5 266 aa15.99■□□□□ 0.15
SRGAP3-204ENST00000470951 EIF5BO60841 1220 aaKnown RBP15.99■□□□□ 0.15
SRGAP3-204ENST00000470951 NEFLP07196 543 aa15.99■□□□□ 0.15
SRGAP3-204ENST00000470951 FKBP8Q14318 412 aa15.99■□□□□ 0.15
SRGAP3-204ENST00000470951 CUX1P39880 1505 aa15.98■□□□□ 0.15
SRGAP3-204ENST00000470951 KCNH8Q96L42 1107 aa15.97■□□□□ 0.15
SRGAP3-204ENST00000470951 WDR97A6NE52 1622 aa15.97■□□□□ 0.15
SRGAP3-204ENST00000470951 PPP1R15AO75807 674 aaPredicted RBP15.95■□□□□ 0.14
SRGAP3-204ENST00000470951 ANO8Q9HCE9 1232 aaPredicted RBP15.93■□□□□ 0.14
SRGAP3-204ENST00000470951 TOPBP1Q92547 1522 aa15.93■□□□□ 0.14
SRGAP3-204ENST00000470951 WDR62O43379 1518 aa15.92■□□□□ 0.14
SRGAP3-204ENST00000470951 DDX10Q13206 875 aaKnown RBP15.91■□□□□ 0.14
SRGAP3-204ENST00000470951 RBM19Q9Y4C8 960 aaKnown RBP15.91■□□□□ 0.14
SRGAP3-204ENST00000470951 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
SRGAP3-204ENST00000470951 LRRC9Q6ZRR7 1453 aa15.91■□□□□ 0.14
SRGAP3-204ENST00000470951 DNMBPQ6XZF7 1577 aa15.9■□□□□ 0.14
SRGAP3-204ENST00000470951 CFAP43Q8NDM7 1665 aa15.9■□□□□ 0.14
SRGAP3-204ENST00000470951 ITGAEP38570 1179 aa15.89■□□□□ 0.13
SRGAP3-204ENST00000470951 PODXL2Q9NZ53 605 aa15.89■□□□□ 0.13
SRGAP3-204ENST00000470951 ANP32CO43423 234 aa15.87■□□□□ 0.13
SRGAP3-204ENST00000470951 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.86■□□□□ 0.13
SRGAP3-204ENST00000470951 FHAD1B1AJZ9 1412 aa15.86■□□□□ 0.13
SRGAP3-204ENST00000470951 PHLDB1Q86UU1 1377 aa15.83■□□□□ 0.13
SRGAP3-204ENST00000470951 FGD5Q6ZNL6 1462 aa15.83■□□□□ 0.13
SRGAP3-204ENST00000470951 POLA1P09884 1462 aaPredicted RBP15.82■□□□□ 0.12
SRGAP3-204ENST00000470951 SIN3AQ96ST3 1273 aa15.8■□□□□ 0.12
SRGAP3-204ENST00000470951 RAD54L2Q9Y4B4 1467 aa15.8■□□□□ 0.12
SRGAP3-204ENST00000470951 IGF1RP08069 1367 aa15.79■□□□□ 0.12
SRGAP3-204ENST00000470951 FANCIQ9NVI1 1328 aa15.79■□□□□ 0.12
SRGAP3-204ENST00000470951 PLCB2Q00722 1185 aa15.78■□□□□ 0.12
SRGAP3-204ENST00000470951 MYT1LQ9UL68 1186 aa15.77■□□□□ 0.12
SRGAP3-204ENST00000470951 ERICH6BQ5W0A0 696 aa15.77■□□□□ 0.11
SRGAP3-204ENST00000470951 TRIM52Q96A61 297 aa15.76■□□□□ 0.11
SRGAP3-204ENST00000470951 PCF11O94913 1555 aaKnown RBP15.76■□□□□ 0.11
SRGAP3-204ENST00000470951 FAM50AQ14320 339 aaKnown RBP15.75■□□□□ 0.11
SRGAP3-204ENST00000470951 CARMIL1Q5VZK9 1371 aa15.74■□□□□ 0.11
SRGAP3-204ENST00000470951 FYCO1Q9BQS8 1478 aa15.74■□□□□ 0.11
SRGAP3-204ENST00000470951 AQRO60306 1485 aaKnown RBP eCLIP15.73■□□□□ 0.11
SRGAP3-204ENST00000470951 TARBP1Q13395 1621 aaKnown RBP15.72■□□□□ 0.11
SRGAP3-204ENST00000470951 TONSLQ96HA7 1378 aa15.72■□□□□ 0.11
SRGAP3-204ENST00000470951 ZNF608Q9ULD9 1512 aaPredicted RBP15.72■□□□□ 0.11
SRGAP3-204ENST00000470951 IFT140Q96RY7 1462 aa15.71■□□□□ 0.11
SRGAP3-204ENST00000470951 EFCAB5A4FU69 1503 aa15.71■□□□□ 0.11
SRGAP3-204ENST00000470951 CDK11AQ9UQ88 783 aaPredicted RBP15.71■□□□□ 0.1
SRGAP3-204ENST00000470951 TDRD9Q8NDG6 1382 aaKnown RBP15.7■□□□□ 0.1
SRGAP3-204ENST00000470951 MSH5O43196 834 aa15.68■□□□□ 0.1
SRGAP3-204ENST00000470951 UACAQ9BZF9 1416 aa15.68■□□□□ 0.1
SRGAP3-204ENST00000470951 CASKIN1Q8WXD9 1431 aa15.68■□□□□ 0.1
SRGAP3-204ENST00000470951 HFM1A2PYH4 1435 aa15.66■□□□□ 0.1
SRGAP3-204ENST00000470951 CCDC18Q5T9S5 1454 aa15.66■□□□□ 0.1
SRGAP3-204ENST00000470951 HAP1P54257 671 aaPredicted RBP15.65■□□□□ 0.1
SRGAP3-204ENST00000470951 ABCA10Q8WWZ4 1543 aa15.64■□□□□ 0.09
SRGAP3-204ENST00000470951 FGD6Q6ZV73 1430 aa15.64■□□□□ 0.09
SRGAP3-204ENST00000470951 PTPN23Q9H3S7 1636 aa15.64■□□□□ 0.09
SRGAP3-204ENST00000470951 HIRIP3Q9BW71 556 aaPredicted RBP15.63■□□□□ 0.09
SRGAP3-204ENST00000470951 SALL2Q9Y467 1007 aaPredicted RBP15.63■□□□□ 0.09
SRGAP3-204ENST00000470951 EIF4G3O43432 1585 aaKnown RBP15.61■□□□□ 0.09
SRGAP3-204ENST00000470951 HNRNPUQ00839 825 aaKnown RBP eCLIP15.61■□□□□ 0.09
SRGAP3-204ENST00000470951 KDM5BQ9UGL1 1544 aa15.6■□□□□ 0.09
SRGAP3-204ENST00000470951 PPP4R2Q9NY27 417 aa15.6■□□□□ 0.09
SRGAP3-204ENST00000470951 CTTNBP2Q8WZ74 1663 aa15.59■□□□□ 0.09
SRGAP3-204ENST00000470951 FMN1Q68DA7 1419 aa15.58■□□□□ 0.09
SRGAP3-204ENST00000470951 GAPVD1Q14C86 1478 aa15.58■□□□□ 0.08
SRGAP3-204ENST00000470951 NCOA2Q15596 1464 aa15.58■□□□□ 0.08
SRGAP3-204ENST00000470951 FHOD3Q2V2M9 1422 aa15.57■□□□□ 0.08
SRGAP3-204ENST00000470951 PKNOX2Q96KN3 472 aa15.57■□□□□ 0.08
SRGAP3-204ENST00000470951 CUL7Q14999 1698 aa15.57■□□□□ 0.08
SRGAP3-204ENST00000470951 ABCA5Q8WWZ7 1642 aa15.56■□□□□ 0.08
SRGAP3-204ENST00000470951 NAIPQ13075 1403 aa15.55■□□□□ 0.08
SRGAP3-204ENST00000470951 PLEKHG5O94827 1062 aa15.54■□□□□ 0.08
SRGAP3-204ENST00000470951 SNAPC4Q5SXM2 1469 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms