RNA–Protein interactions for RNA: ENST00000470951.5

SRGAP3-204, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 2,334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-204ENST00000470951 NISCHQ9Y2I1 1504 aa22.15■■□□□ 1.14
SRGAP3-204ENST00000470951 SLC24A1O60721 1099 aa19.53■□□□□ 0.72
SRGAP3-204ENST00000470951 CCDC180Q9P1Z9 1646 aa19.35■□□□□ 0.69
SRGAP3-204ENST00000470951 PELP1Q8IZL8 1130 aaKnown RBP19.24■□□□□ 0.67
SRGAP3-204ENST00000470951 SHROOM4Q9ULL8 1493 aa18.98■□□□□ 0.63
SRGAP3-204ENST00000470951 MYT1Q01538 1121 aa18.9■□□□□ 0.62
SRGAP3-204ENST00000470951 HRCP23327 699 aa18.89■□□□□ 0.61
SRGAP3-204ENST00000470951 SUPT5HO00267 1087 aaKnown RBP18.85■□□□□ 0.61
SRGAP3-204ENST00000470951 ZCCHC6Q5VYS8 1495 aaKnown RBP18.84■□□□□ 0.61
SRGAP3-204ENST00000470951 ABCC9O60706 1549 aa18.84■□□□□ 0.61
SRGAP3-204ENST00000470951 MYO15BQ96JP2 1530 aa18.66■□□□□ 0.58
SRGAP3-204ENST00000470951 CHIC1Q5VXU3 224 aa18.65■□□□□ 0.58
SRGAP3-204ENST00000470951 DCAF1Q9Y4B6 1507 aa18.47■□□□□ 0.55
SRGAP3-204ENST00000470951 PCGF6Q9BYE7 350 aa18.46■□□□□ 0.55
SRGAP3-204ENST00000470951 DCAF8L2P0C7V8 631 aa18.45■□□□□ 0.54
SRGAP3-204ENST00000470951 PPARGC1BQ86YN6 1023 aaKnown RBP18.23■□□□□ 0.51
SRGAP3-204ENST00000470951 EHMT2Q96KQ7 1210 aa18.18■□□□□ 0.5
SRGAP3-204ENST00000470951 TTBK1Q5TCY1 1321 aaPredicted RBP18.17■□□□□ 0.5
SRGAP3-204ENST00000470951 NACADO15069 1562 aa18.15■□□□□ 0.5
SRGAP3-204ENST00000470951 TRIM26Q12899 539 aaPredicted RBP18.14■□□□□ 0.49
SRGAP3-204ENST00000470951 RB1CC1Q8TDY2 1594 aa18.12■□□□□ 0.49
SRGAP3-204ENST00000470951 ZEB1P37275 1124 aaPredicted RBP18.04■□□□□ 0.48
SRGAP3-204ENST00000470951 LOC105371045A0A1W2PR82 267 aa18■□□□□ 0.47
SRGAP3-204ENST00000470951 SCRIBQ14160 1630 aa17.83■□□□□ 0.44
SRGAP3-204ENST00000470951 UNC13AQ9UPW8 1703 aa17.78■□□□□ 0.44
SRGAP3-204ENST00000470951 PLPPR3Q6T4P5 718 aa17.76■□□□□ 0.43
SRGAP3-204ENST00000470951 PABPN1Q86U42 306 aaKnown RBP eCLIP17.71■□□□□ 0.43
SRGAP3-204ENST00000470951 DAXXQ9UER7 740 aaPredicted RBP17.67■□□□□ 0.42
SRGAP3-204ENST00000470951 RSF1Q96T23 1441 aaPredicted RBP17.66■□□□□ 0.42
SRGAP3-204ENST00000470951 SCAF1Q9H7N4 1312 aaKnown RBP17.62■□□□□ 0.41
SRGAP3-204ENST00000470951 BICRAQ9NZM4 1560 aa17.62■□□□□ 0.41
SRGAP3-204ENST00000470951 TRIM41Q8WV44 630 aa17.61■□□□□ 0.41
SRGAP3-204ENST00000470951 RTN4Q9NQC3 1192 aaKnown RBP17.6■□□□□ 0.41
SRGAP3-204ENST00000470951 PRKCSHP14314 528 aaPredicted RBP17.43■□□□□ 0.38
SRGAP3-204ENST00000470951 NCBP3Q53F19 620 aaKnown RBP17.38■□□□□ 0.37
SRGAP3-204ENST00000470951 ACIN1Q9UKV3 1341 aaKnown RBP17.37■□□□□ 0.37
SRGAP3-204ENST00000470951 FAM9AQ8IZU1 332 aaPredicted RBP17.36■□□□□ 0.37
SRGAP3-204ENST00000470951 CENPBP07199 599 aaPredicted RBP17.26■□□□□ 0.35
SRGAP3-204ENST00000470951 CCER1Q8TC90 406 aaPredicted RBP17.24■□□□□ 0.35
SRGAP3-204ENST00000470951 NEUROD1Q13562 356 aa17.22■□□□□ 0.35
SRGAP3-204ENST00000470951 BCL11AQ9H165 835 aa17.22■□□□□ 0.35
SRGAP3-204ENST00000470951 CECR2Q9BXF3 1484 aa17.19■□□□□ 0.34
SRGAP3-204ENST00000470951 WRNQ14191 1432 aaPredicted RBP eCLIP17.18■□□□□ 0.34
SRGAP3-204ENST00000470951 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.18■□□□□ 0.34
SRGAP3-204ENST00000470951 MROH2BQ7Z745 1585 aa17.18■□□□□ 0.34
SRGAP3-204ENST00000470951 DIEXFQ68CQ4 756 aaKnown RBP17.18■□□□□ 0.34
SRGAP3-204ENST00000470951 EIF4G1Q04637 1599 aaKnown RBP17.17■□□□□ 0.34
SRGAP3-204ENST00000470951 ERICH6Q7L0X2 663 aa17.16■□□□□ 0.34
SRGAP3-204ENST00000470951 BAZ1AQ9NRL2 1556 aaPredicted RBP17.15■□□□□ 0.34
SRGAP3-204ENST00000470951 APLP2Q06481 763 aa17.14■□□□□ 0.33
SRGAP3-204ENST00000470951 WIZO95785 1651 aa17.13■□□□□ 0.33
SRGAP3-204ENST00000470951 AEBP2Q6ZN18 517 aaPredicted RBP17.13■□□□□ 0.33
SRGAP3-204ENST00000470951 GTF3C3Q9Y5Q9 886 aa17.12■□□□□ 0.33
SRGAP3-204ENST00000470951 DNAJC5BQ9UF47 199 aa17.09■□□□□ 0.33
SRGAP3-204ENST00000470951 AMER1Q5JTC6 1135 aaPredicted RBP17.08■□□□□ 0.33
SRGAP3-204ENST00000470951 SMARCA4P51532 1647 aa17.01■□□□□ 0.31
SRGAP3-204ENST00000470951 CC2D2AQ9P2K1 1620 aa17■□□□□ 0.31
SRGAP3-204ENST00000470951 CEP162Q5TB80 1403 aa16.98■□□□□ 0.31
SRGAP3-204ENST00000470951 TNIKQ9UKE5 1360 aa16.97■□□□□ 0.31
SRGAP3-204ENST00000470951 KCNA4P22459 653 aa16.97■□□□□ 0.31
SRGAP3-204ENST00000470951 EEA1Q15075 1411 aa16.96■□□□□ 0.31
SRGAP3-204ENST00000470951 ZNF316A6NFI3 1004 aaPredicted RBP16.96■□□□□ 0.31
SRGAP3-204ENST00000470951 TOP2AP11388 1531 aaKnown RBP16.93■□□□□ 0.3
SRGAP3-204ENST00000470951 CCDC88BA6NC98 1476 aa16.88■□□□□ 0.29
SRGAP3-204ENST00000470951 ABCC8Q09428 1581 aa16.86■□□□□ 0.29
SRGAP3-204ENST00000470951 ATAD2BQ9ULI0 1458 aa16.86■□□□□ 0.29
SRGAP3-204ENST00000470951 CSRNP3Q8WYN3 585 aa16.85■□□□□ 0.29
SRGAP3-204ENST00000470951 SMARCA2P51531 1590 aa16.83■□□□□ 0.28
SRGAP3-204ENST00000470951 GOLGA3Q08378 1498 aa16.79■□□□□ 0.28
SRGAP3-204ENST00000470951 SOGA1O94964 1423 aa16.78■□□□□ 0.28
SRGAP3-204ENST00000470951 PEG3Q9GZU2 1588 aa16.78■□□□□ 0.28
SRGAP3-204ENST00000470951 NCAPD3P42695 1498 aa16.77■□□□□ 0.27
SRGAP3-204ENST00000470951 BAZ1BQ9UIG0 1483 aaKnown RBP16.74■□□□□ 0.27
SRGAP3-204ENST00000470951 CLSPNQ9HAW4 1339 aa16.72■□□□□ 0.27
SRGAP3-204ENST00000470951 PHF23Q9BUL5 403 aaPredicted RBP16.7■□□□□ 0.26
SRGAP3-204ENST00000470951 UBTFP17480 764 aaKnown RBP16.69■□□□□ 0.26
SRGAP3-204ENST00000470951 MIER1Q8N108 512 aa16.69■□□□□ 0.26
SRGAP3-204ENST00000470951 KIF21BO75037 1637 aa16.69■□□□□ 0.26
SRGAP3-204ENST00000470951 HMGXB3Q12766 1538 aa16.68■□□□□ 0.26
SRGAP3-204ENST00000470951 YTHDC1Q96MU7 727 aaKnown RBP16.67■□□□□ 0.26
SRGAP3-204ENST00000470951 CEP164Q9UPV0 1460 aa16.66■□□□□ 0.26
SRGAP3-204ENST00000470951 RUSC2Q8N2Y8 1516 aa16.65■□□□□ 0.26
SRGAP3-204ENST00000470951 ARXQ96QS3 562 aa16.64■□□□□ 0.25
SRGAP3-204ENST00000470951 TIMELESSQ9UNS1 1208 aa16.6■□□□□ 0.25
SRGAP3-204ENST00000470951 VPS8Q8N3P4 1428 aa16.6■□□□□ 0.25
SRGAP3-204ENST00000470951 ANP32EQ9BTT0 268 aa16.59■□□□□ 0.25
SRGAP3-204ENST00000470951 CLIP1P30622 1438 aa16.57■□□□□ 0.24
SRGAP3-204ENST00000470951 HNRNPUL2Q1KMD3 747 aaKnown RBP16.54■□□□□ 0.24
SRGAP3-204ENST00000470951 SYNJ1O43426 1573 aa16.48■□□□□ 0.23
SRGAP3-204ENST00000470951 SUPT16HQ9Y5B9 1047 aaKnown RBP16.41■□□□□ 0.22
SRGAP3-204ENST00000470951 DHX57Q6P158 1386 aaKnown RBP16.41■□□□□ 0.22
SRGAP3-204ENST00000470951 NESP48681 1621 aa16.4■□□□□ 0.22
SRGAP3-204ENST00000470951 RAPGEF2Q9Y4G8 1499 aa16.38■□□□□ 0.21
SRGAP3-204ENST00000470951 ERICH3Q5RHP9 1530 aa16.35■□□□□ 0.21
SRGAP3-204ENST00000470951 CUX2O14529 1486 aa16.34■□□□□ 0.21
SRGAP3-204ENST00000470951 TULP1O00294 542 aaPredicted RBP16.33■□□□□ 0.2
SRGAP3-204ENST00000470951 CADPSQ9ULU8 1353 aa16.33■□□□□ 0.2
SRGAP3-204ENST00000470951 TOP2BQ02880 1626 aa16.31■□□□□ 0.2
SRGAP3-204ENST00000470951 TAOK2Q9UL54 1235 aa16.31■□□□□ 0.2
SRGAP3-204ENST00000470951 RRBP1Q9P2E9 1410 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms