RNA–Protein interactions for RNA: ENST00000470763.1

NPHP4-207, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 3,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-207ENST00000470763 RBM19Q9Y4C8 960 aaKnown RBP19.72■□□□□ 0.75
NPHP4-207ENST00000470763 KIF21BO75037 1637 aa19.7■□□□□ 0.74
NPHP4-207ENST00000470763 POLA1P09884 1462 aaPredicted RBP19.68■□□□□ 0.74
NPHP4-207ENST00000470763 TARBP1Q13395 1621 aaKnown RBP19.67■□□□□ 0.74
NPHP4-207ENST00000470763 ITGAEP38570 1179 aa19.66■□□□□ 0.74
NPHP4-207ENST00000470763 RAPGEF2Q9Y4G8 1499 aa19.66■□□□□ 0.74
NPHP4-207ENST00000470763 CUX1P39880 1505 aa19.65■□□□□ 0.74
NPHP4-207ENST00000470763 EIF4G3O43432 1585 aaKnown RBP19.62■□□□□ 0.73
NPHP4-207ENST00000470763 RAD54L2Q9Y4B4 1467 aa19.62■□□□□ 0.73
NPHP4-207ENST00000470763 SYNJ1O43426 1573 aa19.61■□□□□ 0.73
NPHP4-207ENST00000470763 AQRO60306 1485 aaKnown RBP eCLIP19.6■□□□□ 0.73
NPHP4-207ENST00000470763 KANK4Q5T7N3 995 aaPredicted RBP19.6■□□□□ 0.73
NPHP4-207ENST00000470763 NEFLP07196 543 aa19.6■□□□□ 0.73
NPHP4-207ENST00000470763 FGD5Q6ZNL6 1462 aa19.59■□□□□ 0.73
NPHP4-207ENST00000470763 DDX10Q13206 875 aaKnown RBP19.58■□□□□ 0.72
NPHP4-207ENST00000470763 OSCARQ8IYS5 282 aa19.57■□□□□ 0.72
NPHP4-207ENST00000470763 MSH5O43196 834 aa19.55■□□□□ 0.72
NPHP4-207ENST00000470763 TRIM52Q96A61 297 aa19.55■□□□□ 0.72
NPHP4-207ENST00000470763 TDRD9Q8NDG6 1382 aaKnown RBP19.52■□□□□ 0.72
NPHP4-207ENST00000470763 HIRIP3Q9BW71 556 aaPredicted RBP19.45■□□□□ 0.7
NPHP4-207ENST00000470763 RRBP1Q9P2E9 1410 aaKnown RBP19.44■□□□□ 0.7
NPHP4-207ENST00000470763 WDR97A6NE52 1622 aa19.44■□□□□ 0.7
NPHP4-207ENST00000470763 ARAP1Q96P48 1450 aa19.44■□□□□ 0.7
NPHP4-207ENST00000470763 CHD1O14646 1710 aa19.41■□□□□ 0.7
NPHP4-207ENST00000470763 CCNB3Q8WWL7 1395 aa19.4■□□□□ 0.7
NPHP4-207ENST00000470763 RAB3GAP2Q9H2M9 1393 aa19.39■□□□□ 0.7
NPHP4-207ENST00000470763 MAPKBP1O60336 1514 aa19.39■□□□□ 0.69
NPHP4-207ENST00000470763 TOP2BQ02880 1626 aa19.39■□□□□ 0.69
NPHP4-207ENST00000470763 ERICH6Q7L0X2 663 aa19.39■□□□□ 0.69
NPHP4-207ENST00000470763 BIVM-ERCC5R4GMW8 1640 aa19.38■□□□□ 0.69
NPHP4-207ENST00000470763 SNAPC4Q5SXM2 1469 aa19.38■□□□□ 0.69
NPHP4-207ENST00000470763 ABCA10Q8WWZ4 1543 aa19.38■□□□□ 0.69
NPHP4-207ENST00000470763 SIN3AQ96ST3 1273 aa19.38■□□□□ 0.69
NPHP4-207ENST00000470763 PPP1R15AO75807 674 aaPredicted RBP19.36■□□□□ 0.69
NPHP4-207ENST00000470763 FBLN2P98095 1184 aa19.36■□□□□ 0.69
NPHP4-207ENST00000470763 IRX6P78412 446 aaPredicted RBP19.36■□□□□ 0.69
NPHP4-207ENST00000470763 GRIN2BQ13224 1484 aa19.36■□□□□ 0.69
NPHP4-207ENST00000470763 GAPVD1Q14C86 1478 aa19.34■□□□□ 0.69
NPHP4-207ENST00000470763 ABCA5Q8WWZ7 1642 aa19.33■□□□□ 0.69
NPHP4-207ENST00000470763 ANP32CO43423 234 aa19.33■□□□□ 0.68
NPHP4-207ENST00000470763 MAGI1Q96QZ7 1491 aaPredicted RBP19.32■□□□□ 0.68
NPHP4-207ENST00000470763 PRKCSHP14314 528 aaPredicted RBP19.32■□□□□ 0.68
NPHP4-207ENST00000470763 PBRM1Q86U86 1689 aa19.31■□□□□ 0.68
NPHP4-207ENST00000470763 FANCIQ9NVI1 1328 aa19.31■□□□□ 0.68
NPHP4-207ENST00000470763 RIMBP3CA6NJZ7 1639 aa19.31■□□□□ 0.68
NPHP4-207ENST00000470763 RIMBP3BA6NNM3 1639 aa19.31■□□□□ 0.68
NPHP4-207ENST00000470763 RIMBP3Q9UFD9 1639 aa19.31■□□□□ 0.68
NPHP4-207ENST00000470763 CCER2I3L3R5 266 aa19.29■□□□□ 0.68
NPHP4-207ENST00000470763 ARHGEF11O15085 1522 aa19.28■□□□□ 0.68
NPHP4-207ENST00000470763 CDK11AQ9UQ88 783 aaPredicted RBP19.28■□□□□ 0.68
NPHP4-207ENST00000470763 CHMP7Q8WUX9 453 aaPredicted RBP19.26■□□□□ 0.67
NPHP4-207ENST00000470763 SYNJ2O15056 1496 aa19.26■□□□□ 0.67
NPHP4-207ENST00000470763 PRXQ9BXM0 1461 aa19.22■□□□□ 0.67
NPHP4-207ENST00000470763 ERICH3Q5RHP9 1530 aa19.22■□□□□ 0.67
NPHP4-207ENST00000470763 CLASP1Q7Z460 1538 aa19.21■□□□□ 0.67
NPHP4-207ENST00000470763 SETD5Q9C0A6 1442 aa19.21■□□□□ 0.67
NPHP4-207ENST00000470763 HNRNPUQ00839 825 aaKnown RBP eCLIP19.2■□□□□ 0.66
NPHP4-207ENST00000470763 DEKP35659 375 aaKnown RBP19.18■□□□□ 0.66
NPHP4-207ENST00000470763 FAM50AQ14320 339 aaKnown RBP19.17■□□□□ 0.66
NPHP4-207ENST00000470763 ADAMTS12P58397 1594 aa19.15■□□□□ 0.66
NPHP4-207ENST00000470763 ARHGAP35Q9NRY4 1499 aa19.14■□□□□ 0.66
NPHP4-207ENST00000470763 GRIN2AQ12879 1464 aa19.13■□□□□ 0.65
NPHP4-207ENST00000470763 CYB5RLQ6IPT4 315 aa19.12■□□□□ 0.65
NPHP4-207ENST00000470763 FHAD1B1AJZ9 1412 aa19.1■□□□□ 0.65
NPHP4-207ENST00000470763 NBR1Q14596 966 aa19.07■□□□□ 0.64
NPHP4-207ENST00000470763 PHLDB1Q86UU1 1377 aa19.07■□□□□ 0.64
NPHP4-207ENST00000470763 CEP170Q5SW79 1584 aa19.06■□□□□ 0.64
NPHP4-207ENST00000470763 NUP160Q12769 1436 aa19.06■□□□□ 0.64
NPHP4-207ENST00000470763 MYT1LQ9UL68 1186 aa19.05■□□□□ 0.64
NPHP4-207ENST00000470763 TIMELESSQ9UNS1 1208 aa19.05■□□□□ 0.64
NPHP4-207ENST00000470763 B4GALNT3Q6L9W6 998 aa19.04■□□□□ 0.64
NPHP4-207ENST00000470763 PPP4R2Q9NY27 417 aa19.03■□□□□ 0.64
NPHP4-207ENST00000470763 TIAM1Q13009 1591 aa19.03■□□□□ 0.64
NPHP4-207ENST00000470763 TONSLQ96HA7 1378 aa19.01■□□□□ 0.63
NPHP4-207ENST00000470763 IGF1RP08069 1367 aa19■□□□□ 0.63
NPHP4-207ENST00000470763 KIF27Q86VH2 1401 aa18.99■□□□□ 0.63
NPHP4-207ENST00000470763 PAK3O75914 559 aaPredicted RBP18.98■□□□□ 0.63
NPHP4-207ENST00000470763 LRRC9Q6ZRR7 1453 aa18.98■□□□□ 0.63
NPHP4-207ENST00000470763 ERCC6L2Q5T890 1561 aa18.98■□□□□ 0.63
NPHP4-207ENST00000470763 ATP1B4Q9UN42 357 aaPredicted RBP18.97■□□□□ 0.63
NPHP4-207ENST00000470763 NOP58Q9Y2X3 529 aaKnown RBP18.97■□□□□ 0.63
NPHP4-207ENST00000470763 ANO8Q9HCE9 1232 aaPredicted RBP18.95■□□□□ 0.62
NPHP4-207ENST00000470763 SHROOM2Q13796 1616 aa18.94■□□□□ 0.62
NPHP4-207ENST00000470763 CCDC184Q52MB2 194 aa18.93■□□□□ 0.62
NPHP4-207ENST00000470763 ERICH6BQ5W0A0 696 aa18.92■□□□□ 0.62
NPHP4-207ENST00000470763 P3H3Q8IVL6 736 aa18.9■□□□□ 0.62
NPHP4-207ENST00000470763 FAM9BQ8IZU0 186 aa18.89■□□□□ 0.62
NPHP4-207ENST00000470763 CUL7Q14999 1698 aa18.89■□□□□ 0.62
NPHP4-207ENST00000470763 MAP3K1Q13233 1512 aa18.88■□□□□ 0.61
NPHP4-207ENST00000470763 WASHC2AQ641Q2 1341 aa18.86■□□□□ 0.61
NPHP4-207ENST00000470763 JPH4Q96JJ6 628 aa18.86■□□□□ 0.61
NPHP4-207ENST00000470763 CARMIL1Q5VZK9 1371 aa18.85■□□□□ 0.61
NPHP4-207ENST00000470763 PRG4Q92954 1404 aaPredicted RBP18.84■□□□□ 0.61
NPHP4-207ENST00000470763 HSPA5P11021 654 aaKnown RBP18.82■□□□□ 0.6
NPHP4-207ENST00000470763 SALL2Q9Y467 1007 aaPredicted RBP18.82■□□□□ 0.6
NPHP4-207ENST00000470763 KIAA0586Q9BVV6 1533 aa18.8■□□□□ 0.6
NPHP4-207ENST00000470763 CCDC18Q5T9S5 1454 aa18.8■□□□□ 0.6
NPHP4-207ENST00000470763 RTL5Q5HYW3 569 aaPredicted RBP18.79■□□□□ 0.6
NPHP4-207ENST00000470763 PCF11O94913 1555 aaKnown RBP18.79■□□□□ 0.6
NPHP4-207ENST00000470763 MRS2Q9HD23 443 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms