RNA–Protein interactions for RNA: ENST00000470763.1

NPHP4-207, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 3,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-207ENST00000470763 NISCHQ9Y2I1 1504 aa27.13■■□□□ 1.93
NPHP4-207ENST00000470763 CCDC180Q9P1Z9 1646 aa24.17■■□□□ 1.46
NPHP4-207ENST00000470763 ABCC9O60706 1549 aa23.92■■□□□ 1.42
NPHP4-207ENST00000470763 HRCP23327 699 aa23.26■■□□□ 1.31
NPHP4-207ENST00000470763 SHROOM4Q9ULL8 1493 aa23.25■■□□□ 1.31
NPHP4-207ENST00000470763 SUPT5HO00267 1087 aaKnown RBP23.12■■□□□ 1.29
NPHP4-207ENST00000470763 PPARGC1BQ86YN6 1023 aaKnown RBP22.91■■□□□ 1.26
NPHP4-207ENST00000470763 PCGF6Q9BYE7 350 aa22.9■■□□□ 1.26
NPHP4-207ENST00000470763 RB1CC1Q8TDY2 1594 aa22.85■■□□□ 1.25
NPHP4-207ENST00000470763 MYO15BQ96JP2 1530 aa22.84■■□□□ 1.25
NPHP4-207ENST00000470763 NACADO15069 1562 aa22.78■■□□□ 1.24
NPHP4-207ENST00000470763 DCAF8L2P0C7V8 631 aa22.75■■□□□ 1.23
NPHP4-207ENST00000470763 CHIC1Q5VXU3 224 aa22.65■■□□□ 1.22
NPHP4-207ENST00000470763 ZCCHC6Q5VYS8 1495 aaKnown RBP22.56■■□□□ 1.2
NPHP4-207ENST00000470763 DCAF1Q9Y4B6 1507 aa22.41■■□□□ 1.18
NPHP4-207ENST00000470763 UNC13AQ9UPW8 1703 aa22.4■■□□□ 1.18
NPHP4-207ENST00000470763 PABPN1Q86U42 306 aaKnown RBP eCLIP22.34■■□□□ 1.17
NPHP4-207ENST00000470763 BICRAQ9NZM4 1560 aa22.26■■□□□ 1.15
NPHP4-207ENST00000470763 PELP1Q8IZL8 1130 aaKnown RBP22.25■■□□□ 1.15
NPHP4-207ENST00000470763 DNAJC5BQ9UF47 199 aa22.24■■□□□ 1.15
NPHP4-207ENST00000470763 LOC105371045A0A1W2PR82 267 aa22.2■■□□□ 1.14
NPHP4-207ENST00000470763 SCRIBQ14160 1630 aa22.08■■□□□ 1.13
NPHP4-207ENST00000470763 TRIM26Q12899 539 aaPredicted RBP22.07■■□□□ 1.12
NPHP4-207ENST00000470763 SCAF1Q9H7N4 1312 aaKnown RBP22.03■■□□□ 1.12
NPHP4-207ENST00000470763 ZEB1P37275 1124 aaPredicted RBP21.81■■□□□ 1.08
NPHP4-207ENST00000470763 EIF4G1Q04637 1599 aaKnown RBP21.65■■□□□ 1.06
NPHP4-207ENST00000470763 CC2D2AQ9P2K1 1620 aa21.62■■□□□ 1.05
NPHP4-207ENST00000470763 CECR2Q9BXF3 1484 aa21.5■■□□□ 1.03
NPHP4-207ENST00000470763 ACIN1Q9UKV3 1341 aaKnown RBP21.46■■□□□ 1.03
NPHP4-207ENST00000470763 NEUROD1Q13562 356 aa21.46■■□□□ 1.03
NPHP4-207ENST00000470763 FAM9AQ8IZU1 332 aaPredicted RBP21.42■■□□□ 1.02
NPHP4-207ENST00000470763 EHMT2Q96KQ7 1210 aa21.42■■□□□ 1.02
NPHP4-207ENST00000470763 GTF3C3Q9Y5Q9 886 aa21.34■■□□□ 1.01
NPHP4-207ENST00000470763 TRIM41Q8WV44 630 aa21.32■■□□□ 1
NPHP4-207ENST00000470763 MYT1Q01538 1121 aa21.31■■□□□ 1
NPHP4-207ENST00000470763 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.25■□□□□ 0.99
NPHP4-207ENST00000470763 CENPBP07199 599 aaPredicted RBP21.18■□□□□ 0.98
NPHP4-207ENST00000470763 CCER1Q8TC90 406 aaPredicted RBP21.17■□□□□ 0.98
NPHP4-207ENST00000470763 DIEXFQ68CQ4 756 aaKnown RBP21.15■□□□□ 0.98
NPHP4-207ENST00000470763 SMARCA4P51532 1647 aa21.09■□□□□ 0.97
NPHP4-207ENST00000470763 NCAPD3P42695 1498 aa21.06■□□□□ 0.96
NPHP4-207ENST00000470763 ATAD2BQ9ULI0 1458 aa21.05■□□□□ 0.96
NPHP4-207ENST00000470763 BAZ1AQ9NRL2 1556 aaPredicted RBP21.01■□□□□ 0.95
NPHP4-207ENST00000470763 RSF1Q96T23 1441 aaPredicted RBP20.99■□□□□ 0.95
NPHP4-207ENST00000470763 SMARCA2P51531 1590 aa20.96■□□□□ 0.95
NPHP4-207ENST00000470763 MROH2BQ7Z745 1585 aa20.94■□□□□ 0.94
NPHP4-207ENST00000470763 YTHDC1Q96MU7 727 aaKnown RBP20.91■□□□□ 0.94
NPHP4-207ENST00000470763 HMGXB3Q12766 1538 aa20.91■□□□□ 0.94
NPHP4-207ENST00000470763 TTBK1Q5TCY1 1321 aaPredicted RBP20.89■□□□□ 0.94
NPHP4-207ENST00000470763 PEG3Q9GZU2 1588 aa20.89■□□□□ 0.94
NPHP4-207ENST00000470763 BAZ1BQ9UIG0 1483 aaKnown RBP20.83■□□□□ 0.92
NPHP4-207ENST00000470763 ZNF316A6NFI3 1004 aaPredicted RBP20.71■□□□□ 0.91
NPHP4-207ENST00000470763 WIZO95785 1651 aa20.69■□□□□ 0.9
NPHP4-207ENST00000470763 NESP48681 1621 aa20.67■□□□□ 0.9
NPHP4-207ENST00000470763 MIER1Q8N108 512 aa20.63■□□□□ 0.89
NPHP4-207ENST00000470763 ERCC6Q03468 1493 aa20.58■□□□□ 0.88
NPHP4-207ENST00000470763 LAMC3Q9Y6N6 1575 aa20.5■□□□□ 0.87
NPHP4-207ENST00000470763 WRNQ14191 1432 aaPredicted RBP eCLIP20.45■□□□□ 0.86
NPHP4-207ENST00000470763 CUX2O14529 1486 aa20.44■□□□□ 0.86
NPHP4-207ENST00000470763 CEP162Q5TB80 1403 aa20.43■□□□□ 0.86
NPHP4-207ENST00000470763 CADPSQ9ULU8 1353 aa20.43■□□□□ 0.86
NPHP4-207ENST00000470763 TOP2AP11388 1531 aaKnown RBP20.42■□□□□ 0.86
NPHP4-207ENST00000470763 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
NPHP4-207ENST00000470763 PDS5BQ9NTI5 1447 aa20.37■□□□□ 0.85
NPHP4-207ENST00000470763 THOC2Q8NI27 1593 aaKnown RBP20.36■□□□□ 0.85
NPHP4-207ENST00000470763 HNRNPUL2Q1KMD3 747 aaKnown RBP20.35■□□□□ 0.85
NPHP4-207ENST00000470763 SUPT16HQ9Y5B9 1047 aaKnown RBP20.29■□□□□ 0.84
NPHP4-207ENST00000470763 CCDC88BA6NC98 1476 aa20.28■□□□□ 0.84
NPHP4-207ENST00000470763 ABCC8Q09428 1581 aa20.28■□□□□ 0.84
NPHP4-207ENST00000470763 CFTRP13569 1480 aa20.27■□□□□ 0.84
NPHP4-207ENST00000470763 UBTFP17480 764 aaKnown RBP20.26■□□□□ 0.83
NPHP4-207ENST00000470763 TNIKQ9UKE5 1360 aa20.23■□□□□ 0.83
NPHP4-207ENST00000470763 SOGA1O94964 1423 aa20.23■□□□□ 0.83
NPHP4-207ENST00000470763 FANCD2Q9BXW9 1451 aa20.19■□□□□ 0.82
NPHP4-207ENST00000470763 TSHZ2Q9NRE2 1034 aa20.19■□□□□ 0.82
NPHP4-207ENST00000470763 MRC2Q9UBG0 1479 aa20.19■□□□□ 0.82
NPHP4-207ENST00000470763 ANP32EQ9BTT0 268 aa20.18■□□□□ 0.82
NPHP4-207ENST00000470763 CEP164Q9UPV0 1460 aa20.16■□□□□ 0.82
NPHP4-207ENST00000470763 WDR62O43379 1518 aa20.14■□□□□ 0.82
NPHP4-207ENST00000470763 BCL11AQ9H165 835 aa20.14■□□□□ 0.81
NPHP4-207ENST00000470763 DNAJC5Q9H3Z4 198 aa20.12■□□□□ 0.81
NPHP4-207ENST00000470763 RUSC2Q8N2Y8 1516 aa20.12■□□□□ 0.81
NPHP4-207ENST00000470763 CSRNP3Q8WYN3 585 aa20.11■□□□□ 0.81
NPHP4-207ENST00000470763 CLSPNQ9HAW4 1339 aa20.09■□□□□ 0.81
NPHP4-207ENST00000470763 PRDM2Q13029 1718 aa20.05■□□□□ 0.8
NPHP4-207ENST00000470763 URB2Q14146 1524 aaKnown RBP20.04■□□□□ 0.8
NPHP4-207ENST00000470763 GOLGA3Q08378 1498 aa20■□□□□ 0.79
NPHP4-207ENST00000470763 BCANQ96GW7 911 aa19.98■□□□□ 0.79
NPHP4-207ENST00000470763 EEA1Q15075 1411 aa19.95■□□□□ 0.78
NPHP4-207ENST00000470763 RANGAP1P46060 587 aaPredicted RBP19.92■□□□□ 0.78
NPHP4-207ENST00000470763 APLP2Q06481 763 aa19.91■□□□□ 0.78
NPHP4-207ENST00000470763 KCNH8Q96L42 1107 aa19.89■□□□□ 0.77
NPHP4-207ENST00000470763 CLIP1P30622 1438 aa19.88■□□□□ 0.77
NPHP4-207ENST00000470763 TOPBP1Q92547 1522 aa19.85■□□□□ 0.77
NPHP4-207ENST00000470763 DHX57Q6P158 1386 aaKnown RBP19.85■□□□□ 0.77
NPHP4-207ENST00000470763 VPS8Q8N3P4 1428 aa19.83■□□□□ 0.77
NPHP4-207ENST00000470763 FKBP8Q14318 412 aa19.8■□□□□ 0.76
NPHP4-207ENST00000470763 DNMBPQ6XZF7 1577 aa19.79■□□□□ 0.76
NPHP4-207ENST00000470763 ZNF608Q9ULD9 1512 aaPredicted RBP19.75■□□□□ 0.75
NPHP4-207ENST00000470763 IFT140Q96RY7 1462 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms