RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 WDR97A6NE52 1622 aa28■■■□□ 2.07
SDF4-205ENST00000465727 NEFLP07196 543 aa27.99■■■□□ 2.07
SDF4-205ENST00000465727 CCER2I3L3R5 266 aa27.98■■■□□ 2.07
SDF4-205ENST00000465727 PPP1R15AO75807 674 aaPredicted RBP27.94■■■□□ 2.06
SDF4-205ENST00000465727 BCANQ96GW7 911 aa27.94■■■□□ 2.06
SDF4-205ENST00000465727 ITGAEP38570 1179 aa27.93■■■□□ 2.06
SDF4-205ENST00000465727 DDX10Q13206 875 aaKnown RBP27.92■■■□□ 2.06
SDF4-205ENST00000465727 BCL11AQ9H165 835 aa27.92■■■□□ 2.06
SDF4-205ENST00000465727 LRRC9Q6ZRR7 1453 aa27.9■■■□□ 2.06
SDF4-205ENST00000465727 RBM19Q9Y4C8 960 aaKnown RBP27.88■■■□□ 2.05
SDF4-205ENST00000465727 CFAP43Q8NDM7 1665 aa27.84■■■□□ 2.05
SDF4-205ENST00000465727 ANP32CO43423 234 aa27.81■■■□□ 2.04
SDF4-205ENST00000465727 CFTRP13569 1480 aa27.78■■■□□ 2.04
SDF4-205ENST00000465727 PHLDB1Q86UU1 1377 aa27.78■■■□□ 2.04
SDF4-205ENST00000465727 FHAD1B1AJZ9 1412 aa27.78■■■□□ 2.04
SDF4-205ENST00000465727 SIN3AQ96ST3 1273 aa27.76■■■□□ 2.03
SDF4-205ENST00000465727 PRDM2Q13029 1718 aa27.75■■■□□ 2.03
SDF4-205ENST00000465727 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.75■■■□□ 2.032e-6■■■■■ 26.9
SDF4-205ENST00000465727 IGF1RP08069 1367 aa27.7■■■□□ 2.03
SDF4-205ENST00000465727 TRIM52Q96A61 297 aa27.67■■■□□ 2.02
SDF4-205ENST00000465727 FAM50AQ14320 339 aaKnown RBP27.65■■■□□ 2.02
SDF4-205ENST00000465727 PCF11O94913 1555 aaKnown RBP27.64■■■□□ 2.02
SDF4-205ENST00000465727 FANCIQ9NVI1 1328 aa27.62■■■□□ 2.01
SDF4-205ENST00000465727 CARMIL1Q5VZK9 1371 aa27.61■■■□□ 2.01
SDF4-205ENST00000465727 NESP48681 1621 aa27.61■■■□□ 2.01
SDF4-205ENST00000465727 FYCO1Q9BQS8 1478 aa27.58■■■□□ 2.01
SDF4-205ENST00000465727 TONSLQ96HA7 1378 aa27.56■■■□□ 2
SDF4-205ENST00000465727 AQRO60306 1485 aaKnown RBP eCLIP27.53■■■□□ 22e-9■■■■□ 19.9
SDF4-205ENST00000465727 ERICH6BQ5W0A0 696 aa27.53■■■□□ 2
SDF4-205ENST00000465727 EFCAB5A4FU69 1503 aa27.52■■■□□ 2
SDF4-205ENST00000465727 FGD5Q6ZNL6 1462 aa27.5■■□□□ 1.99
SDF4-205ENST00000465727 MSH5O43196 834 aa27.5■■□□□ 1.99
SDF4-205ENST00000465727 HIRIP3Q9BW71 556 aaPredicted RBP27.5■■□□□ 1.99
SDF4-205ENST00000465727 CDK11AQ9UQ88 783 aaPredicted RBP27.48■■□□□ 1.99
SDF4-205ENST00000465727 UACAQ9BZF9 1416 aa27.48■■□□□ 1.99
SDF4-205ENST00000465727 CASKIN1Q8WXD9 1431 aa27.47■■□□□ 1.99
SDF4-205ENST00000465727 ERCC6Q03468 1493 aa27.47■■□□□ 1.99
SDF4-205ENST00000465727 CCDC18Q5T9S5 1454 aa27.47■■□□□ 1.99
SDF4-205ENST00000465727 HFM1A2PYH4 1435 aa27.44■■□□□ 1.98
SDF4-205ENST00000465727 LAMC3Q9Y6N6 1575 aa27.44■■□□□ 1.98
SDF4-205ENST00000465727 FGD6Q6ZV73 1430 aa27.43■■□□□ 1.98
SDF4-205ENST00000465727 MYT1LQ9UL68 1186 aa27.42■■□□□ 1.98
SDF4-205ENST00000465727 PTPN23Q9H3S7 1636 aa27.4■■□□□ 1.98
SDF4-205ENST00000465727 HNRNPUQ00839 825 aaKnown RBP eCLIP27.38■■□□□ 1.97
SDF4-205ENST00000465727 ERICH6Q7L0X2 663 aa27.37■■□□□ 1.97
SDF4-205ENST00000465727 KDM5BQ9UGL1 1544 aa27.35■■□□□ 1.97
SDF4-205ENST00000465727 CADPSQ9ULU8 1353 aa27.34■■□□□ 1.97
SDF4-205ENST00000465727 FHOD3Q2V2M9 1422 aa27.34■■□□□ 1.97
SDF4-205ENST00000465727 FMN1Q68DA7 1419 aa27.31■■□□□ 1.96
SDF4-205ENST00000465727 CTTNBP2Q8WZ74 1663 aa27.31■■□□□ 1.96
SDF4-205ENST00000465727 PPP4R2Q9NY27 417 aa27.29■■□□□ 1.96
SDF4-205ENST00000465727 ATP1B4Q9UN42 357 aaPredicted RBP27.27■■□□□ 1.96
SDF4-205ENST00000465727 NCOA2Q15596 1464 aa27.27■■□□□ 1.96
SDF4-205ENST00000465727 KIF21AQ7Z4S6 1674 aa27.27■■□□□ 1.96
SDF4-205ENST00000465727 NAIPQ13075 1403 aa27.26■■□□□ 1.95
SDF4-205ENST00000465727 CUL7Q14999 1698 aa27.26■■□□□ 1.95
SDF4-205ENST00000465727 P3H3Q8IVL6 736 aa27.25■■□□□ 1.95
SDF4-205ENST00000465727 PDS5BQ9NTI5 1447 aa27.24■■□□□ 1.95
SDF4-205ENST00000465727 SNAPC4Q5SXM2 1469 aa27.24■■□□□ 1.95
SDF4-205ENST00000465727 PTPRKQ15262 1439 aa27.24■■□□□ 1.95
SDF4-205ENST00000465727 THOC2Q8NI27 1593 aaKnown RBP27.21■■□□□ 1.95
SDF4-205ENST00000465727 CNTLNQ9NXG0 1405 aa27.2■■□□□ 1.94
SDF4-205ENST00000465727 MTUS2Q5JR59 1369 aa27.2■■□□□ 1.94
SDF4-205ENST00000465727 WASHC2AQ641Q2 1341 aa27.19■■□□□ 1.94
SDF4-205ENST00000465727 MYOM3Q5VTT5 1437 aa27.19■■□□□ 1.94
SDF4-205ENST00000465727 ABCA10Q8WWZ4 1543 aa27.18■■□□□ 1.94
SDF4-205ENST00000465727 IRX6P78412 446 aaPredicted RBP27.18■■□□□ 1.94
SDF4-205ENST00000465727 HECW1Q76N89 1606 aa27.18■■□□□ 1.94
SDF4-205ENST00000465727 SUPT6HQ7KZ85 1726 aaKnown RBP27.16■■□□□ 1.94
SDF4-205ENST00000465727 GCC2Q8IWJ2 1684 aa27.14■■□□□ 1.93
SDF4-205ENST00000465727 HSPA5P11021 654 aaKnown RBP27.13■■□□□ 1.93
SDF4-205ENST00000465727 EHBP1L1Q8N3D4 1523 aa27.11■■□□□ 1.93
SDF4-205ENST00000465727 EIF4G2P78344 907 aaKnown RBP eCLIP27.11■■□□□ 1.932e-8■■■■■ 34.8
SDF4-205ENST00000465727 DNMBPQ6XZF7 1577 aa27.1■■□□□ 1.93
SDF4-205ENST00000465727 ZBED9Q6R2W3 1325 aa27.1■■□□□ 1.93
SDF4-205ENST00000465727 LRRIQ1Q96JM4 1722 aa27.1■■□□□ 1.93
SDF4-205ENST00000465727 SAMD9Q5K651 1589 aa27.09■■□□□ 1.93
SDF4-205ENST00000465727 AKNAQ7Z591 1439 aa27.09■■□□□ 1.93
SDF4-205ENST00000465727 NCOA1Q15788 1441 aa27.05■■□□□ 1.92
SDF4-205ENST00000465727 GRIN2BQ13224 1484 aa27.05■■□□□ 1.92
SDF4-205ENST00000465727 FANCD2Q9BXW9 1451 aa27.05■■□□□ 1.92
SDF4-205ENST00000465727 ARHGEF11O15085 1522 aa27.04■■□□□ 1.92
SDF4-205ENST00000465727 UGGT2Q9NYU1 1516 aa27.03■■□□□ 1.92
SDF4-205ENST00000465727 PRKRIP1Q9H875 184 aaPredicted RBP27.03■■□□□ 1.92
SDF4-205ENST00000465727 POLR1AO95602 1720 aaPredicted RBP27.02■■□□□ 1.92
SDF4-205ENST00000465727 TCOF1Q13428 1488 aaKnown RBP27.02■■□□□ 1.92
SDF4-205ENST00000465727 MRC2Q9UBG0 1479 aa27.01■■□□□ 1.91
SDF4-205ENST00000465727 DENND4BO75064 1496 aaPredicted RBP27■■□□□ 1.91
SDF4-205ENST00000465727 CCDC7Q96M83 1385 aa27■■□□□ 1.91
SDF4-205ENST00000465727 ABCA5Q8WWZ7 1642 aa26.99■■□□□ 1.91
SDF4-205ENST00000465727 POLA1P09884 1462 aaPredicted RBP26.99■■□□□ 1.91
SDF4-205ENST00000465727 RAD54L2Q9Y4B4 1467 aa26.97■■□□□ 1.91
SDF4-205ENST00000465727 DEKP35659 375 aaKnown RBP26.95■■□□□ 1.9
SDF4-205ENST00000465727 CCDC184Q52MB2 194 aa26.95■■□□□ 1.9
SDF4-205ENST00000465727 MRS2Q9HD23 443 aa26.95■■□□□ 1.9
SDF4-205ENST00000465727 TOPBP1Q92547 1522 aa26.95■■□□□ 1.9
SDF4-205ENST00000465727 B4GALNT3Q6L9W6 998 aa26.94■■□□□ 1.9
SDF4-205ENST00000465727 WDR62O43379 1518 aa26.94■■□□□ 1.9
SDF4-205ENST00000465727 NOP58Q9Y2X3 529 aaKnown RBP26.94■■□□□ 1.9
SDF4-205ENST00000465727 FAM9BQ8IZU0 186 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms