RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 FHAD1B1AJZ9 1412 aa14.63□□□□□ -0.07
PTPRE-205ENST00000463727 PRXQ9BXM0 1461 aa14.63□□□□□ -0.07
PTPRE-205ENST00000463727 SUPT16HQ9Y5B9 1047 aaKnown RBP14.62□□□□□ -0.07
PTPRE-205ENST00000463727 MTUS2Q5JR59 1369 aa14.62□□□□□ -0.07
PTPRE-205ENST00000463727 ERICH6Q7L0X2 663 aa14.62□□□□□ -0.07
PTPRE-205ENST00000463727 ERICH3Q5RHP9 1530 aa14.62□□□□□ -0.07
PTPRE-205ENST00000463727 SETD5Q9C0A6 1442 aa14.61□□□□□ -0.07
PTPRE-205ENST00000463727 ARAP1Q96P48 1450 aa14.6□□□□□ -0.07
PTPRE-205ENST00000463727 PRDM2Q13029 1718 aa14.58□□□□□ -0.08
PTPRE-205ENST00000463727 TIMELESSQ9UNS1 1208 aa14.56□□□□□ -0.08
PTPRE-205ENST00000463727 IGF1RP08069 1367 aa14.55□□□□□ -0.08
PTPRE-205ENST00000463727 POLR3GLQ9BT43 218 aa14.55□□□□□ -0.08
PTPRE-205ENST00000463727 ARID3CA6NKF2 412 aa14.54□□□□□ -0.08
PTPRE-205ENST00000463727 RRBP1Q9P2E9 1410 aaKnown RBP14.54□□□□□ -0.08
PTPRE-205ENST00000463727 CHIC2Q9UKJ5 165 aa14.53□□□□□ -0.08
PTPRE-205ENST00000463727 CNGB1Q14028 1251 aaPredicted RBP14.52□□□□□ -0.08
PTPRE-205ENST00000463727 NESP48681 1621 aa14.52□□□□□ -0.08
PTPRE-205ENST00000463727 ARHGAP35Q9NRY4 1499 aa14.52□□□□□ -0.09
PTPRE-205ENST00000463727 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
PTPRE-205ENST00000463727 FANCD2Q9BXW9 1451 aa14.51□□□□□ -0.09
PTPRE-205ENST00000463727 HNRNPUQ00839 825 aaKnown RBP eCLIP14.49□□□□□ -0.09
PTPRE-205ENST00000463727 RRP7BPQ9NSQ0 103 aa14.47□□□□□ -0.09
PTPRE-205ENST00000463727 KCNH8Q96L42 1107 aa14.46□□□□□ -0.09
PTPRE-205ENST00000463727 PPP1R15AO75807 674 aaPredicted RBP14.46□□□□□ -0.09
PTPRE-205ENST00000463727 FGD5Q6ZNL6 1462 aa14.46□□□□□ -0.09
PTPRE-205ENST00000463727 FHOD3Q2V2M9 1422 aa14.46□□□□□ -0.1
PTPRE-205ENST00000463727 CDK11AQ9UQ88 783 aaPredicted RBP14.43□□□□□ -0.1
PTPRE-205ENST00000463727 PHLDB1Q86UU1 1377 aa14.43□□□□□ -0.1
PTPRE-205ENST00000463727 LRRC9Q6ZRR7 1453 aa14.42□□□□□ -0.1
PTPRE-205ENST00000463727 CCER2I3L3R5 266 aa14.41□□□□□ -0.1
PTPRE-205ENST00000463727 FMN1Q68DA7 1419 aa14.41□□□□□ -0.1
PTPRE-205ENST00000463727 ZNF326Q5BKZ1 582 aaKnown RBP14.41□□□□□ -0.1
PTPRE-205ENST00000463727 EIF4G2P78344 907 aaKnown RBP eCLIP14.4□□□□□ -0.1
PTPRE-205ENST00000463727 LAMC3Q9Y6N6 1575 aa14.38□□□□□ -0.11
PTPRE-205ENST00000463727 DNMBPQ6XZF7 1577 aa14.37□□□□□ -0.11
PTPRE-205ENST00000463727 TOPBP1Q92547 1522 aa14.37□□□□□ -0.11
PTPRE-205ENST00000463727 TDRD9Q8NDG6 1382 aaKnown RBP14.37□□□□□ -0.11
PTPRE-205ENST00000463727 FAM9BQ8IZU0 186 aa14.36□□□□□ -0.11
PTPRE-205ENST00000463727 RAD54L2Q9Y4B4 1467 aa14.36□□□□□ -0.11
PTPRE-205ENST00000463727 TSHZ2Q9NRE2 1034 aa14.35□□□□□ -0.11
PTPRE-205ENST00000463727 ZNF777Q9ULD5 760 aaPredicted RBP14.34□□□□□ -0.11
PTPRE-205ENST00000463727 TIAM1Q13009 1591 aa14.34□□□□□ -0.11
PTPRE-205ENST00000463727 POLA1P09884 1462 aaPredicted RBP14.33□□□□□ -0.11
PTPRE-205ENST00000463727 IRX6P78412 446 aaPredicted RBP14.33□□□□□ -0.12
PTPRE-205ENST00000463727 FBLN2P98095 1184 aa14.32□□□□□ -0.12
PTPRE-205ENST00000463727 MRS2Q9HD23 443 aa14.32□□□□□ -0.12
PTPRE-205ENST00000463727 PDS5BQ9NTI5 1447 aa14.32□□□□□ -0.12
PTPRE-205ENST00000463727 URB2Q14146 1524 aaKnown RBP14.31□□□□□ -0.12
PTPRE-205ENST00000463727 SLC4A1APQ9BWU0 796 aaKnown RBP14.3□□□□□ -0.12
PTPRE-205ENST00000463727 ANP32EQ9BTT0 268 aa14.29□□□□□ -0.12
PTPRE-205ENST00000463727 FGD6Q6ZV73 1430 aa14.28□□□□□ -0.12
PTPRE-205ENST00000463727 CASKIN1Q8WXD9 1431 aa14.27□□□□□ -0.12
PTPRE-205ENST00000463727 HSPA5P11021 654 aaKnown RBP14.27□□□□□ -0.12
PTPRE-205ENST00000463727 ABCA10Q8WWZ4 1543 aa14.27□□□□□ -0.13
PTPRE-205ENST00000463727 CCDC18Q5T9S5 1454 aa14.27□□□□□ -0.13
PTPRE-205ENST00000463727 MAP3K1Q13233 1512 aa14.27□□□□□ -0.13
PTPRE-205ENST00000463727 KIF21AQ7Z4S6 1674 aa14.26□□□□□ -0.13
PTPRE-205ENST00000463727 FYCO1Q9BQS8 1478 aa14.24□□□□□ -0.13
PTPRE-205ENST00000463727 WDR97A6NE52 1622 aa14.23□□□□□ -0.13
PTPRE-205ENST00000463727 MPHOSPH9Q99550 1183 aa14.22□□□□□ -0.13
PTPRE-205ENST00000463727 FOXD1Q16676 465 aa14.22□□□□□ -0.13
PTPRE-205ENST00000463727 UACAQ9BZF9 1416 aa14.22□□□□□ -0.13
PTPRE-205ENST00000463727 RBM19Q9Y4C8 960 aaKnown RBP14.21□□□□□ -0.13
PTPRE-205ENST00000463727 EFCAB5A4FU69 1503 aa14.19□□□□□ -0.14
PTPRE-205ENST00000463727 CFDP1Q9UEE9 299 aaPredicted RBP14.19□□□□□ -0.14
PTPRE-205ENST00000463727 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.19□□□□□ -0.14
PTPRE-205ENST00000463727 MYOM3Q5VTT5 1437 aa14.19□□□□□ -0.14
PTPRE-205ENST00000463727 L3MBTL2Q969R5 705 aa14.19□□□□□ -0.14
PTPRE-205ENST00000463727 PCF11O94913 1555 aaKnown RBP14.18□□□□□ -0.14
PTPRE-205ENST00000463727 MAPKBP1O60336 1514 aa14.17□□□□□ -0.14
PTPRE-205ENST00000463727 GAPVD1Q14C86 1478 aa14.17□□□□□ -0.14
PTPRE-205ENST00000463727 TMC1Q8TDI8 760 aa14.17□□□□□ -0.14
PTPRE-205ENST00000463727 CHMP7Q8WUX9 453 aaPredicted RBP14.16□□□□□ -0.14
PTPRE-205ENST00000463727 NCOA2Q15596 1464 aa14.15□□□□□ -0.14
PTPRE-205ENST00000463727 TSPY4P0CV99 314 aa14.15□□□□□ -0.14
PTPRE-205ENST00000463727 TSPY10P0CW01 314 aa14.15□□□□□ -0.14
PTPRE-205ENST00000463727 PPP4R2Q9NY27 417 aa14.15□□□□□ -0.14
PTPRE-205ENST00000463727 HFM1A2PYH4 1435 aa14.14□□□□□ -0.15
PTPRE-205ENST00000463727 KDM2AQ9Y2K7 1162 aa14.14□□□□□ -0.15
PTPRE-205ENST00000463727 CUL7Q14999 1698 aa14.13□□□□□ -0.15
PTPRE-205ENST00000463727 AQRO60306 1485 aaKnown RBP eCLIP14.12□□□□□ -0.15
PTPRE-205ENST00000463727 ABCA5Q8WWZ7 1642 aa14.12□□□□□ -0.15
PTPRE-205ENST00000463727 CCDC136Q96JN2 1154 aa14.11□□□□□ -0.15
PTPRE-205ENST00000463727 MRC2Q9UBG0 1479 aa14.11□□□□□ -0.15
PTPRE-205ENST00000463727 PLEKHD1A6NEE1 506 aa14.09□□□□□ -0.15
PTPRE-205ENST00000463727 TARBP1Q13395 1621 aaKnown RBP14.09□□□□□ -0.15
PTPRE-205ENST00000463727 NAIPQ13075 1403 aa14.08□□□□□ -0.16
PTPRE-205ENST00000463727 ERICH6BQ5W0A0 696 aa14.08□□□□□ -0.16
PTPRE-205ENST00000463727 B4GALNT3Q6L9W6 998 aa14.08□□□□□ -0.16
PTPRE-205ENST00000463727 WASHC2AQ641Q2 1341 aa14.08□□□□□ -0.16
PTPRE-205ENST00000463727 PRKRIP1Q9H875 184 aaPredicted RBP14.07□□□□□ -0.16
PTPRE-205ENST00000463727 SENP3-EIF4A1A0A087X0R7 540 aa14.07□□□□□ -0.16
PTPRE-205ENST00000463727 ANP32AP39687 249 aaKnown RBP14.07□□□□□ -0.16
PTPRE-205ENST00000463727 RTL5Q5HYW3 569 aaPredicted RBP14.07□□□□□ -0.16
PTPRE-205ENST00000463727 CARD11Q9BXL7 1154 aa14.06□□□□□ -0.16
PTPRE-205ENST00000463727 SALL2Q9Y467 1007 aaPredicted RBP14.06□□□□□ -0.16
PTPRE-205ENST00000463727 MYT1LQ9UL68 1186 aa14.06□□□□□ -0.16
PTPRE-205ENST00000463727 PKD2Q13563 968 aa14.04□□□□□ -0.16
PTPRE-205ENST00000463727 CTTNBP2Q8WZ74 1663 aa14.04□□□□□ -0.16
PTPRE-205ENST00000463727 ERCC6Q03468 1493 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms