RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 NISCHQ9Y2I1 1504 aa20.23■□□□□ 0.83
PTPRE-205ENST00000463727 SHROOM4Q9ULL8 1493 aa17.91■□□□□ 0.46
PTPRE-205ENST00000463727 SUPT5HO00267 1087 aaKnown RBP17.84■□□□□ 0.45
PTPRE-205ENST00000463727 DCAF8L2P0C7V8 631 aa17.84■□□□□ 0.45
PTPRE-205ENST00000463727 CCDC180Q9P1Z9 1646 aa17.38■□□□□ 0.37
PTPRE-205ENST00000463727 ZCCHC6Q5VYS8 1495 aaKnown RBP17.03■□□□□ 0.32
PTPRE-205ENST00000463727 CHIC1Q5VXU3 224 aa16.96■□□□□ 0.31
PTPRE-205ENST00000463727 PCGF6Q9BYE7 350 aa16.94■□□□□ 0.3
PTPRE-205ENST00000463727 HRCP23327 699 aa16.74■□□□□ 0.27
PTPRE-205ENST00000463727 LOC105371045A0A1W2PR82 267 aa16.61■□□□□ 0.25
PTPRE-205ENST00000463727 EHMT2Q96KQ7 1210 aa16.6■□□□□ 0.25
PTPRE-205ENST00000463727 DCAF1Q9Y4B6 1507 aa16.59■□□□□ 0.25
PTPRE-205ENST00000463727 FAM9AQ8IZU1 332 aaPredicted RBP16.58■□□□□ 0.24
PTPRE-205ENST00000463727 TRIM41Q8WV44 630 aa16.57■□□□□ 0.24
PTPRE-205ENST00000463727 MYO15BQ96JP2 1530 aa16.47■□□□□ 0.23
PTPRE-205ENST00000463727 TRIM26Q12899 539 aaPredicted RBP16.46■□□□□ 0.22
PTPRE-205ENST00000463727 ABCC9O60706 1549 aa16.44■□□□□ 0.22
PTPRE-205ENST00000463727 PPARGC1BQ86YN6 1023 aaKnown RBP16.39■□□□□ 0.22
PTPRE-205ENST00000463727 ZEB1P37275 1124 aaPredicted RBP16.35■□□□□ 0.21
PTPRE-205ENST00000463727 SCRIBQ14160 1630 aa16.24■□□□□ 0.19
PTPRE-205ENST00000463727 NACADO15069 1562 aa16.16■□□□□ 0.18
PTPRE-205ENST00000463727 TTBK1Q5TCY1 1321 aaPredicted RBP16.08■□□□□ 0.16
PTPRE-205ENST00000463727 CCER1Q8TC90 406 aaPredicted RBP16.06■□□□□ 0.16
PTPRE-205ENST00000463727 RSF1Q96T23 1441 aaPredicted RBP16.04■□□□□ 0.16
PTPRE-205ENST00000463727 RB1CC1Q8TDY2 1594 aa15.99■□□□□ 0.15
PTPRE-205ENST00000463727 UBTFP17480 764 aaKnown RBP15.94■□□□□ 0.14
PTPRE-205ENST00000463727 APLP2Q06481 763 aa15.87■□□□□ 0.13
PTPRE-205ENST00000463727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.85■□□□□ 0.13
PTPRE-205ENST00000463727 CECR2Q9BXF3 1484 aa15.8■□□□□ 0.12
PTPRE-205ENST00000463727 CENPBP07199 599 aaPredicted RBP15.77■□□□□ 0.12
PTPRE-205ENST00000463727 RANGAP1P46060 587 aaPredicted RBP15.74■□□□□ 0.11
PTPRE-205ENST00000463727 PELP1Q8IZL8 1130 aaKnown RBP15.74■□□□□ 0.11
PTPRE-205ENST00000463727 UNC13AQ9UPW8 1703 aa15.71■□□□□ 0.11
PTPRE-205ENST00000463727 MROH2BQ7Z745 1585 aa15.7■□□□□ 0.1
PTPRE-205ENST00000463727 PABPN1Q86U42 306 aaKnown RBP eCLIP15.64■□□□□ 0.09
PTPRE-205ENST00000463727 DIEXFQ68CQ4 756 aaKnown RBP15.62■□□□□ 0.09
PTPRE-205ENST00000463727 CSRNP3Q8WYN3 585 aa15.62■□□□□ 0.09
PTPRE-205ENST00000463727 WIZO95785 1651 aa15.6■□□□□ 0.09
PTPRE-205ENST00000463727 HNRNPUL2Q1KMD3 747 aaKnown RBP15.59■□□□□ 0.09
PTPRE-205ENST00000463727 BAZ1AQ9NRL2 1556 aaPredicted RBP15.57■□□□□ 0.08
PTPRE-205ENST00000463727 BICRAQ9NZM4 1560 aa15.54■□□□□ 0.08
PTPRE-205ENST00000463727 YTHDC1Q96MU7 727 aaKnown RBP15.52■□□□□ 0.08
PTPRE-205ENST00000463727 SMARCA4P51532 1647 aa15.49■□□□□ 0.07
PTPRE-205ENST00000463727 ACIN1Q9UKV3 1341 aaKnown RBP15.44■□□□□ 0.06
PTPRE-205ENST00000463727 CEP162Q5TB80 1403 aa15.43■□□□□ 0.06
PTPRE-205ENST00000463727 SCAF1Q9H7N4 1312 aaKnown RBP15.42■□□□□ 0.06
PTPRE-205ENST00000463727 ZNF316A6NFI3 1004 aaPredicted RBP15.4■□□□□ 0.06
PTPRE-205ENST00000463727 EEA1Q15075 1411 aa15.39■□□□□ 0.05
PTPRE-205ENST00000463727 GTF3C3Q9Y5Q9 886 aa15.38■□□□□ 0.05
PTPRE-205ENST00000463727 TNIKQ9UKE5 1360 aa15.38■□□□□ 0.05
PTPRE-205ENST00000463727 TOP2AP11388 1531 aaKnown RBP15.36■□□□□ 0.05
PTPRE-205ENST00000463727 CCDC88BA6NC98 1476 aa15.35■□□□□ 0.05
PTPRE-205ENST00000463727 SOGA1O94964 1423 aa15.34■□□□□ 0.05
PTPRE-205ENST00000463727 ABCC8Q09428 1581 aa15.34■□□□□ 0.05
PTPRE-205ENST00000463727 NEUROD1Q13562 356 aa15.32■□□□□ 0.04
PTPRE-205ENST00000463727 GOLGA3Q08378 1498 aa15.3■□□□□ 0.04
PTPRE-205ENST00000463727 WRNQ14191 1432 aaPredicted RBP eCLIP15.29■□□□□ 0.04
PTPRE-205ENST00000463727 ITGAEP38570 1179 aa15.28■□□□□ 0.04
PTPRE-205ENST00000463727 ATP1B4Q9UN42 357 aaPredicted RBP15.27■□□□□ 0.04
PTPRE-205ENST00000463727 SMARCA2P51531 1590 aa15.25■□□□□ 0.03
PTPRE-205ENST00000463727 CLIP1P30622 1438 aa15.24■□□□□ 0.03
PTPRE-205ENST00000463727 EIF4G1Q04637 1599 aaKnown RBP15.2■□□□□ 0.02
PTPRE-205ENST00000463727 PEG3Q9GZU2 1588 aa15.19■□□□□ 0.02
PTPRE-205ENST00000463727 CEP164Q9UPV0 1460 aa15.19■□□□□ 0.02
PTPRE-205ENST00000463727 ATAD2BQ9ULI0 1458 aa15.18■□□□□ 0.02
PTPRE-205ENST00000463727 BAZ1BQ9UIG0 1483 aaKnown RBP15.14■□□□□ 0.01
PTPRE-205ENST00000463727 RUSC2Q8N2Y8 1516 aa15.13■□□□□ 0.01
PTPRE-205ENST00000463727 MIER1Q8N108 512 aa15.1■□□□□ 0.01
PTPRE-205ENST00000463727 MYT1Q01538 1121 aa15.08■□□□□ 0.01
PTPRE-205ENST00000463727 VPS8Q8N3P4 1428 aa15.04■□□□□ -0
PTPRE-205ENST00000463727 FAM50AQ14320 339 aaKnown RBP15.02■□□□□ -0
PTPRE-205ENST00000463727 NCAPD3P42695 1498 aa14.95□□□□□ -0.02
PTPRE-205ENST00000463727 NEFLP07196 543 aa14.94□□□□□ -0.02
PTPRE-205ENST00000463727 RAPGEF2Q9Y4G8 1499 aa14.93□□□□□ -0.02
PTPRE-205ENST00000463727 P3H3Q8IVL6 736 aa14.93□□□□□ -0.02
PTPRE-205ENST00000463727 KIF27Q86VH2 1401 aa14.92□□□□□ -0.02
PTPRE-205ENST00000463727 HMGXB3Q12766 1538 aa14.92□□□□□ -0.02
PTPRE-205ENST00000463727 CLSPNQ9HAW4 1339 aa14.92□□□□□ -0.02
PTPRE-205ENST00000463727 KANK4Q5T7N3 995 aaPredicted RBP14.86□□□□□ -0.03
PTPRE-205ENST00000463727 SYNJ1O43426 1573 aa14.85□□□□□ -0.03
PTPRE-205ENST00000463727 CCNB3Q8WWL7 1395 aa14.8□□□□□ -0.04
PTPRE-205ENST00000463727 KIF21BO75037 1637 aa14.8□□□□□ -0.04
PTPRE-205ENST00000463727 CC2D2AQ9P2K1 1620 aa14.79□□□□□ -0.04
PTPRE-205ENST00000463727 DDX10Q13206 875 aaKnown RBP14.77□□□□□ -0.04
PTPRE-205ENST00000463727 ANP32CO43423 234 aa14.76□□□□□ -0.05
PTPRE-205ENST00000463727 BCANQ96GW7 911 aa14.75□□□□□ -0.05
PTPRE-205ENST00000463727 DHX57Q6P158 1386 aaKnown RBP14.74□□□□□ -0.05
PTPRE-205ENST00000463727 CFTRP13569 1480 aa14.72□□□□□ -0.05
PTPRE-205ENST00000463727 CUX2O14529 1486 aa14.71□□□□□ -0.05
PTPRE-205ENST00000463727 CARMIL1Q5VZK9 1371 aa14.7□□□□□ -0.06
PTPRE-205ENST00000463727 TOP2BQ02880 1626 aa14.7□□□□□ -0.06
PTPRE-205ENST00000463727 TRIM52Q96A61 297 aa14.68□□□□□ -0.06
PTPRE-205ENST00000463727 TONSLQ96HA7 1378 aa14.67□□□□□ -0.06
PTPRE-205ENST00000463727 SIN3AQ96ST3 1273 aa14.66□□□□□ -0.06
PTPRE-205ENST00000463727 HIRIP3Q9BW71 556 aaPredicted RBP14.65□□□□□ -0.06
PTPRE-205ENST00000463727 BIVM-ERCC5R4GMW8 1640 aa14.65□□□□□ -0.06
PTPRE-205ENST00000463727 CADPSQ9ULU8 1353 aa14.65□□□□□ -0.06
PTPRE-205ENST00000463727 CUX1P39880 1505 aa14.65□□□□□ -0.06
PTPRE-205ENST00000463727 RAB3GAP2Q9H2M9 1393 aa14.64□□□□□ -0.07
PTPRE-205ENST00000463727 FKBP8Q14318 412 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms