RNA–Protein interactions for RNA: ENST00000462723.1

RPA3-205, Transcript of replication protein A3, humanhuman

TSL 2

Gene RPA3, Length 989 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3-205ENST00000462723 CEP164Q9UPV0 1460 aa13.57□□□□□ -0.24
RPA3-205ENST00000462723 BIVM-ERCC5R4GMW8 1640 aa13.57□□□□□ -0.24
RPA3-205ENST00000462723 CUX1P39880 1505 aa13.54□□□□□ -0.24
RPA3-205ENST00000462723 KIF21AQ7Z4S6 1674 aa13.53□□□□□ -0.24
RPA3-205ENST00000462723 DNMBPQ6XZF7 1577 aa13.49□□□□□ -0.25
RPA3-205ENST00000462723 TOPBP1Q92547 1522 aa13.46□□□□□ -0.25
RPA3-205ENST00000462723 ERCC6Q03468 1493 aa13.45□□□□□ -0.26
RPA3-205ENST00000462723 URB2Q14146 1524 aaKnown RBP13.44□□□□□ -0.26
RPA3-205ENST00000462723 MRC2Q9UBG0 1479 aa13.43□□□□□ -0.26
RPA3-205ENST00000462723 EEA1Q15075 1411 aa13.43□□□□□ -0.26
RPA3-205ENST00000462723 FGD5Q6ZNL6 1462 aa13.42□□□□□ -0.26
RPA3-205ENST00000462723 FAM9AQ8IZU1 332 aaPredicted RBP13.42□□□□□ -0.26
RPA3-205ENST00000462723 SOGA1O94964 1423 aa13.41□□□□□ -0.26
RPA3-205ENST00000462723 FOXD4L1Q9NU39 408 aa13.39□□□□□ -0.27
RPA3-205ENST00000462723 POLA1P09884 1462 aaPredicted RBP13.37□□□□□ -0.27
RPA3-205ENST00000462723 WDR62O43379 1518 aa13.36□□□□□ -0.27
RPA3-205ENST00000462723 PRKAR2AP13861 404 aaKnown RBP13.36□□□□□ -0.27
RPA3-205ENST00000462723 LHX8Q68G74 356 aa13.36□□□□□ -0.27
RPA3-205ENST00000462723 RUSC2Q8N2Y8 1516 aa13.35□□□□□ -0.27
RPA3-205ENST00000462723 KIF27Q86VH2 1401 aa13.35□□□□□ -0.27
RPA3-205ENST00000462723 THOC2Q8NI27 1593 aaKnown RBP13.34□□□□□ -0.27
RPA3-205ENST00000462723 C19orf67A6NJJ6 358 aa13.33□□□□□ -0.28
RPA3-205ENST00000462723 CSRNP3Q8WYN3 585 aa13.33□□□□□ -0.28
RPA3-205ENST00000462723 CUX2O14529 1486 aa13.32□□□□□ -0.28
RPA3-205ENST00000462723 RAD54L2Q9Y4B4 1467 aa13.31□□□□□ -0.28
RPA3-205ENST00000462723 ABCA10Q8WWZ4 1543 aa13.31□□□□□ -0.28
RPA3-205ENST00000462723 GABBR2O75899 941 aa13.31□□□□□ -0.28
RPA3-205ENST00000462723 SPDYE2BA6NHP3 402 aa13.3□□□□□ -0.28
RPA3-205ENST00000462723 SPDYE6P0CI01 402 aa13.3□□□□□ -0.28
RPA3-205ENST00000462723 SPDYE2Q495Y8 402 aa13.3□□□□□ -0.28
RPA3-205ENST00000462723 LOC105371045A0A1W2PR82 267 aa13.29□□□□□ -0.28
RPA3-205ENST00000462723 WDR97A6NE52 1622 aa13.28□□□□□ -0.28
RPA3-205ENST00000462723 TARBP1Q13395 1621 aaKnown RBP13.27□□□□□ -0.29
RPA3-205ENST00000462723 KIF21BO75037 1637 aa13.25□□□□□ -0.29
RPA3-205ENST00000462723 IFT140Q96RY7 1462 aa13.25□□□□□ -0.29
RPA3-205ENST00000462723 CLEC11AQ9Y240 323 aa13.25□□□□□ -0.29
RPA3-205ENST00000462723 ZBTB22O15209 634 aa13.24□□□□□ -0.29
RPA3-205ENST00000462723 SPDYE1Q8NFV5 336 aaPredicted RBP13.23□□□□□ -0.29
RPA3-205ENST00000462723 GOLGA3Q08378 1498 aa13.23□□□□□ -0.29
RPA3-205ENST00000462723 ABCA5Q8WWZ7 1642 aa13.22□□□□□ -0.29
RPA3-205ENST00000462723 IGF1RP08069 1367 aa13.2□□□□□ -0.3
RPA3-205ENST00000462723 TDRD9Q8NDG6 1382 aaKnown RBP13.2□□□□□ -0.3
RPA3-205ENST00000462723 GAPVD1Q14C86 1478 aa13.2□□□□□ -0.3
RPA3-205ENST00000462723 PRXQ9BXM0 1461 aa13.2□□□□□ -0.3
RPA3-205ENST00000462723 ERICH3Q5RHP9 1530 aa13.18□□□□□ -0.3
RPA3-205ENST00000462723 CUL7Q14999 1698 aa13.17□□□□□ -0.3
RPA3-205ENST00000462723 UBTFP17480 764 aaKnown RBP13.16□□□□□ -0.3
RPA3-205ENST00000462723 RAPGEF2Q9Y4G8 1499 aa13.16□□□□□ -0.3
RPA3-205ENST00000462723 PBRM1Q86U86 1689 aa13.15□□□□□ -0.3
RPA3-205ENST00000462723 FBLN2P98095 1184 aa13.15□□□□□ -0.3
RPA3-205ENST00000462723 CARMIL1Q5VZK9 1371 aa13.15□□□□□ -0.3
RPA3-205ENST00000462723 ZNF608Q9ULD9 1512 aaPredicted RBP13.14□□□□□ -0.31
RPA3-205ENST00000462723 TNIKQ9UKE5 1360 aa13.14□□□□□ -0.31
RPA3-205ENST00000462723 AQRO60306 1485 aaKnown RBP eCLIP13.14□□□□□ -0.317e-7■■□□□ 14.1
RPA3-205ENST00000462723 EIF4G3O43432 1585 aaKnown RBP13.13□□□□□ -0.31
RPA3-205ENST00000462723 GRIN2BQ13224 1484 aa13.12□□□□□ -0.31
RPA3-205ENST00000462723 CHADLQ6NUI6 762 aa13.07□□□□□ -0.32
RPA3-205ENST00000462723 FHAD1B1AJZ9 1412 aa13.06□□□□□ -0.32
RPA3-205ENST00000462723 ATXN8OSP0DMR3 200 aa13.06□□□□□ -0.32
RPA3-205ENST00000462723 PLSCR2Q9NRY7 297 aa13.06□□□□□ -0.32
RPA3-205ENST00000462723 ADAMTS12P58397 1594 aa13.06□□□□□ -0.32
RPA3-205ENST00000462723 CEP162Q5TB80 1403 aa13.05□□□□□ -0.32
RPA3-205ENST00000462723 ZNF692Q9BU19 519 aaPredicted RBP13.05□□□□□ -0.32
RPA3-205ENST00000462723 SSUH2Q9Y2M2 353 aa13.05□□□□□ -0.32
RPA3-205ENST00000462723 SNAPC4Q5SXM2 1469 aa13.04□□□□□ -0.32
RPA3-205ENST00000462723 MAGI1Q96QZ7 1491 aaPredicted RBP13.04□□□□□ -0.32
RPA3-205ENST00000462723 POTEIP0CG38 1075 aa13.02□□□□□ -0.33
RPA3-205ENST00000462723 CTTNBP2Q8WZ74 1663 aa13□□□□□ -0.33
RPA3-205ENST00000462723 CLIP1P30622 1438 aa12.99□□□□□ -0.33
RPA3-205ENST00000462723 SYNJ2O15056 1496 aa12.98□□□□□ -0.33
RPA3-205ENST00000462723 MKRN4PQ13434 485 aaPredicted RBP12.98□□□□□ -0.33
RPA3-205ENST00000462723 GRIN2AQ12879 1464 aa12.96□□□□□ -0.34
RPA3-205ENST00000462723 RANGAP1P46060 587 aaPredicted RBP12.95□□□□□ -0.34
RPA3-205ENST00000462723 CHMP7Q8WUX9 453 aaPredicted RBP12.95□□□□□ -0.34
RPA3-205ENST00000462723 PRR29P0C7W0 189 aa12.94□□□□□ -0.34
RPA3-205ENST00000462723 CD44P16070 742 aaKnown RBP12.9□□□□□ -0.34
RPA3-205ENST00000462723 IQGAP2Q13576 1575 aa12.9□□□□□ -0.35
RPA3-205ENST00000462723 EFCAB5A4FU69 1503 aa12.89□□□□□ -0.35
RPA3-205ENST00000462723 ARHGAP35Q9NRY4 1499 aa12.88□□□□□ -0.35
RPA3-205ENST00000462723 CHD1O14646 1710 aa12.88□□□□□ -0.35
RPA3-205ENST00000462723 KIAA0586Q9BVV6 1533 aa12.88□□□□□ -0.35
RPA3-205ENST00000462723 CLCN6P51797 869 aa12.87□□□□□ -0.35
RPA3-205ENST00000462723 CEP170Q5SW79 1584 aa12.86□□□□□ -0.35
RPA3-205ENST00000462723 ARAP1Q96P48 1450 aa12.86□□□□□ -0.35
RPA3-205ENST00000462723 NUP160Q12769 1436 aa12.86□□□□□ -0.35
RPA3-205ENST00000462723 VPS8Q8N3P4 1428 aa12.86□□□□□ -0.35
RPA3-205ENST00000462723 SAMD9Q5K651 1589 aa12.84□□□□□ -0.35
RPA3-205ENST00000462723 UGGT2Q9NYU1 1516 aa12.83□□□□□ -0.36
RPA3-205ENST00000462723 FARP1Q9Y4F1 1045 aaPredicted RBP12.8□□□□□ -0.36
RPA3-205ENST00000462723 P3H3Q8IVL6 736 aa12.79□□□□□ -0.36
RPA3-205ENST00000462723 DCBLD2Q96PD2 775 aa12.79□□□□□ -0.36
RPA3-205ENST00000462723 FHOD3Q2V2M9 1422 aa12.79□□□□□ -0.36
RPA3-205ENST00000462723 FMN1Q68DA7 1419 aa12.77□□□□□ -0.37
RPA3-205ENST00000462723 KIAA0556O60303 1618 aa12.75□□□□□ -0.37
RPA3-205ENST00000462723 CARMIL2Q6F5E8 1435 aa12.75□□□□□ -0.37
RPA3-205ENST00000462723 JPH4Q96JJ6 628 aa12.75□□□□□ -0.37
RPA3-205ENST00000462723 DISP1Q96F81 1524 aa12.74□□□□□ -0.37
RPA3-205ENST00000462723 PCF11O94913 1555 aaKnown RBP12.72□□□□□ -0.37
RPA3-205ENST00000462723 CLASP1Q7Z460 1538 aa12.72□□□□□ -0.37
RPA3-205ENST00000462723 FYCO1Q9BQS8 1478 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms