RNA–Protein interactions for RNA: ENST00000462723.1

RPA3-205, Transcript of replication protein A3, humanhuman

TSL 2

Gene RPA3, Length 989 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3-205ENST00000462723 AEBP2Q6ZN18 517 aaPredicted RBP25.38■■□□□ 1.65
RPA3-205ENST00000462723 CHIC1Q5VXU3 224 aa23.7■■□□□ 1.38
RPA3-205ENST00000462723 SENP3Q9H4L4 574 aaPredicted RBP21.74■■□□□ 1.07
RPA3-205ENST00000462723 PHF23Q9BUL5 403 aaPredicted RBP21.38■■□□□ 1.01
RPA3-205ENST00000462723 FOXD1Q16676 465 aa20.36■□□□□ 0.85
RPA3-205ENST00000462723 POTEDQ86YR6 584 aa19.99■□□□□ 0.79
RPA3-205ENST00000462723 MSH5O43196 834 aa19.3■□□□□ 0.68
RPA3-205ENST00000462723 PIAS4Q8N2W9 510 aaPredicted RBP18.85■□□□□ 0.61
RPA3-205ENST00000462723 NISCHQ9Y2I1 1504 aa18.76■□□□□ 0.59
RPA3-205ENST00000462723 PPP6R1Q9UPN7 881 aa18.53■□□□□ 0.56
RPA3-205ENST00000462723 ADRA2BP18089 450 aa18.43■□□□□ 0.54
RPA3-205ENST00000462723 PLPPR3Q6T4P5 718 aa18.43■□□□□ 0.54
RPA3-205ENST00000462723 DMRT2Q9Y5R5 561 aa17.14■□□□□ 0.33
RPA3-205ENST00000462723 MAPK8IP2Q13387 824 aaPredicted RBP17.13■□□□□ 0.33
RPA3-205ENST00000462723 CACNB1Q02641 598 aaPredicted RBP16.99■□□□□ 0.31
RPA3-205ENST00000462723 SCAF1Q9H7N4 1312 aaKnown RBP16.87■□□□□ 0.29
RPA3-205ENST00000462723 DCAF8L1A6NGE4 600 aa16.47■□□□□ 0.23
RPA3-205ENST00000462723 CCDC180Q9P1Z9 1646 aa16.47■□□□□ 0.23
RPA3-205ENST00000462723 RNF39Q9H2S5 420 aa16.42■□□□□ 0.22
RPA3-205ENST00000462723 HOXD11P31277 338 aaPredicted RBP16.25■□□□□ 0.19
RPA3-205ENST00000462723 C1QBPQ07021 282 aaKnown RBP16.14■□□□□ 0.17
RPA3-205ENST00000462723 PPP4R3CPQ6ZMV5 832 aa16.07■□□□□ 0.16
RPA3-205ENST00000462723 RNF216Q9NWF9 866 aaPredicted RBP15.94■□□□□ 0.14
RPA3-205ENST00000462723 CNKSR2Q8WXI2 1034 aa15.92■□□□□ 0.14
RPA3-205ENST00000462723 DNAJC5BQ9UF47 199 aa15.83■□□□□ 0.12
RPA3-205ENST00000462723 ZCCHC6Q5VYS8 1495 aaKnown RBP15.73■□□□□ 0.11
RPA3-205ENST00000462723 ABCC9O60706 1549 aa15.63■□□□□ 0.09
RPA3-205ENST00000462723 DCAF1Q9Y4B6 1507 aa15.54■□□□□ 0.08
RPA3-205ENST00000462723 POTEHQ6S545 545 aa15.54■□□□□ 0.08
RPA3-205ENST00000462723 DCAF8L2P0C7V8 631 aa15.52■□□□□ 0.08
RPA3-205ENST00000462723 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.48■□□□□ 0.073e-6■■■□□ 17.7
RPA3-205ENST00000462723 MYO15BQ96JP2 1530 aa15.41■□□□□ 0.06
RPA3-205ENST00000462723 NACADO15069 1562 aa15.36■□□□□ 0.05
RPA3-205ENST00000462723 RB1CC1Q8TDY2 1594 aa15.26■□□□□ 0.03
RPA3-205ENST00000462723 NCBP3Q53F19 620 aaKnown RBP15.24■□□□□ 0.03
RPA3-205ENST00000462723 SHROOM4Q9ULL8 1493 aa15.17■□□□□ 0.02
RPA3-205ENST00000462723 DSG3P32926 999 aa15.15■□□□□ 0.02
RPA3-205ENST00000462723 SCRIBQ14160 1630 aa15.08■□□□□ 0
RPA3-205ENST00000462723 CAPN15O75808 1086 aa15.07■□□□□ 0
RPA3-205ENST00000462723 SPINK5Q9NQ38 1064 aaPredicted RBP15.07■□□□□ 0
RPA3-205ENST00000462723 U3KPZ7 1027 aaPredicted RBP15.07■□□□□ 0
RPA3-205ENST00000462723 NPM3O75607 178 aaKnown RBP15.02■□□□□ -0
RPA3-205ENST00000462723 UNC13AQ9UPW8 1703 aa14.92□□□□□ -0.02
RPA3-205ENST00000462723 BICRAQ9NZM4 1560 aa14.75□□□□□ -0.05
RPA3-205ENST00000462723 PABPN1Q86U42 306 aaKnown RBP eCLIP14.69□□□□□ -0.06
RPA3-205ENST00000462723 TRHP20396 242 aaPredicted RBP14.67□□□□□ -0.06
RPA3-205ENST00000462723 ABCB7O75027 752 aa14.65□□□□□ -0.06
RPA3-205ENST00000462723 ZNF219Q9P2Y4 722 aaPredicted RBP14.61□□□□□ -0.07
RPA3-205ENST00000462723 APLP2Q06481 763 aa14.58□□□□□ -0.08
RPA3-205ENST00000462723 CECR2Q9BXF3 1484 aa14.55□□□□□ -0.08
RPA3-205ENST00000462723 SUPT5HO00267 1087 aaKnown RBP14.54□□□□□ -0.08
RPA3-205ENST00000462723 BAZ1AQ9NRL2 1556 aaPredicted RBP14.52□□□□□ -0.08
RPA3-205ENST00000462723 SLC4A2P04920 1241 aa14.52□□□□□ -0.09
RPA3-205ENST00000462723 RSF1Q96T23 1441 aaPredicted RBP14.49□□□□□ -0.09
RPA3-205ENST00000462723 MROH2BQ7Z745 1585 aa14.47□□□□□ -0.09
RPA3-205ENST00000462723 SMARCA4P51532 1647 aa14.46□□□□□ -0.09
RPA3-205ENST00000462723 RBM42Q9BTD8 480 aaKnown RBP14.46□□□□□ -0.09
RPA3-205ENST00000462723 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.42□□□□□ -0.1
RPA3-205ENST00000462723 HNRNPUL2Q1KMD3 747 aaKnown RBP14.42□□□□□ -0.1
RPA3-205ENST00000462723 CHRDL2Q6WN34 429 aa14.41□□□□□ -0.1
RPA3-205ENST00000462723 KCNA4P22459 653 aa14.37□□□□□ -0.11
RPA3-205ENST00000462723 WIZO95785 1651 aa14.35□□□□□ -0.11
RPA3-205ENST00000462723 EIF4G1Q04637 1599 aaKnown RBP14.34□□□□□ -0.11
RPA3-205ENST00000462723 SAMD1Q6SPF0 538 aaPredicted RBP14.3□□□□□ -0.12
RPA3-205ENST00000462723 PEG3Q9GZU2 1588 aa14.3□□□□□ -0.12
RPA3-205ENST00000462723 SMARCA2P51531 1590 aa14.26□□□□□ -0.13
RPA3-205ENST00000462723 SP7Q8TDD2 431 aaPredicted RBP14.24□□□□□ -0.13
RPA3-205ENST00000462723 ATAD2BQ9ULI0 1458 aa14.24□□□□□ -0.13
RPA3-205ENST00000462723 TOP2AP11388 1531 aaKnown RBP14.23□□□□□ -0.13
RPA3-205ENST00000462723 BAZ1BQ9UIG0 1483 aaKnown RBP14.18□□□□□ -0.14
RPA3-205ENST00000462723 CC2D2AQ9P2K1 1620 aa14.15□□□□□ -0.14
RPA3-205ENST00000462723 NCAPD3P42695 1498 aa14.15□□□□□ -0.14
RPA3-205ENST00000462723 HMGXB3Q12766 1538 aa14.14□□□□□ -0.15
RPA3-205ENST00000462723 POLA2Q14181 598 aa14.12□□□□□ -0.15
RPA3-205ENST00000462723 CCDC88BA6NC98 1476 aa14.06□□□□□ -0.16
RPA3-205ENST00000462723 AKT1S1Q96B36 256 aa14□□□□□ -0.17
RPA3-205ENST00000462723 PIP4P2Q8N4L2 257 aa13.93□□□□□ -0.18
RPA3-205ENST00000462723 MYCNP04198 464 aaPredicted RBP13.9□□□□□ -0.18
RPA3-205ENST00000462723 HAX1O00165 279 aa13.87□□□□□ -0.19
RPA3-205ENST00000462723 REM2Q8IYK8 340 aaPredicted RBP13.87□□□□□ -0.19
RPA3-205ENST00000462723 CFTRP13569 1480 aa13.8□□□□□ -0.2
RPA3-205ENST00000462723 ZBTB12Q9Y330 459 aaPredicted RBP13.78□□□□□ -0.2
RPA3-205ENST00000462723 PRDM2Q13029 1718 aa13.77□□□□□ -0.21
RPA3-205ENST00000462723 CADPSQ9ULU8 1353 aa13.77□□□□□ -0.21
RPA3-205ENST00000462723 FXR2P51116 673 aaKnown RBP eCLIP13.74□□□□□ -0.21
RPA3-205ENST00000462723 PITPNM1O00562 1244 aa13.72□□□□□ -0.21
RPA3-205ENST00000462723 TRIM41Q8WV44 630 aa13.72□□□□□ -0.21
RPA3-205ENST00000462723 LAMC3Q9Y6N6 1575 aa13.71□□□□□ -0.21
RPA3-205ENST00000462723 ABCC8Q09428 1581 aa13.71□□□□□ -0.22
RPA3-205ENST00000462723 OSCARQ8IYS5 282 aa13.68□□□□□ -0.22
RPA3-205ENST00000462723 WRNQ14191 1432 aaPredicted RBP eCLIP13.66□□□□□ -0.22
RPA3-205ENST00000462723 NESP48681 1621 aa13.66□□□□□ -0.22
RPA3-205ENST00000462723 EVX2Q03828 476 aa13.65□□□□□ -0.22
RPA3-205ENST00000462723 ATF5Q9Y2D1 282 aaPredicted RBP13.65□□□□□ -0.22
RPA3-205ENST00000462723 FANCD2Q9BXW9 1451 aa13.62□□□□□ -0.23
RPA3-205ENST00000462723 SLC4A1APQ9BWU0 796 aaKnown RBP13.62□□□□□ -0.23
RPA3-205ENST00000462723 PDS5BQ9NTI5 1447 aa13.61□□□□□ -0.23
RPA3-205ENST00000462723 SYNJ1O43426 1573 aa13.59□□□□□ -0.23
RPA3-205ENST00000462723 EHMT2Q96KQ7 1210 aa13.59□□□□□ -0.23
RPA3-205ENST00000462723 TOP2BQ02880 1626 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms