RNA–Protein interactions for RNA: ENST00000439247.2

PCNX3-202, Transcript of pecanex 3, humanhuman

TSL 1 (best)

Gene PCNX3, Length 3,104 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX3-202ENST00000439247 IGF1RP08069 1367 aa19.76■□□□□ 0.75
PCNX3-202ENST00000439247 VPS8Q8N3P4 1428 aa19.76■□□□□ 0.75
PCNX3-202ENST00000439247 TARBP1Q13395 1621 aaKnown RBP19.75■□□□□ 0.75
PCNX3-202ENST00000439247 WDR97A6NE52 1622 aa19.74■□□□□ 0.75
PCNX3-202ENST00000439247 KCNH8Q96L42 1107 aa19.74■□□□□ 0.75
PCNX3-202ENST00000439247 PRXQ9BXM0 1461 aa19.71■□□□□ 0.75
PCNX3-202ENST00000439247 DHX57Q6P158 1386 aaKnown RBP19.71■□□□□ 0.75
PCNX3-202ENST00000439247 KIF21BO75037 1637 aa19.71■□□□□ 0.75
PCNX3-202ENST00000439247 ZNF608Q9ULD9 1512 aaPredicted RBP19.69■□□□□ 0.74
PCNX3-202ENST00000439247 AQRO60306 1485 aaKnown RBP eCLIP19.69■□□□□ 0.742e-6■■■■■ 46.6
PCNX3-202ENST00000439247 BCANQ96GW7 911 aa19.68■□□□□ 0.74
PCNX3-202ENST00000439247 ABCA5Q8WWZ7 1642 aa19.66■□□□□ 0.74
PCNX3-202ENST00000439247 GAPVD1Q14C86 1478 aa19.66■□□□□ 0.74
PCNX3-202ENST00000439247 CARMIL1Q5VZK9 1371 aa19.64■□□□□ 0.74
PCNX3-202ENST00000439247 IFT140Q96RY7 1462 aa19.63■□□□□ 0.73
PCNX3-202ENST00000439247 KANK4Q5T7N3 995 aaPredicted RBP19.63■□□□□ 0.73
PCNX3-202ENST00000439247 ANP32EQ9BTT0 268 aa19.6■□□□□ 0.73
PCNX3-202ENST00000439247 ERICH3Q5RHP9 1530 aa19.59■□□□□ 0.73
PCNX3-202ENST00000439247 ITGAEP38570 1179 aa19.58■□□□□ 0.73
PCNX3-202ENST00000439247 CLSPNQ9HAW4 1339 aa19.57■□□□□ 0.72
PCNX3-202ENST00000439247 EIF4G3O43432 1585 aaKnown RBP19.53■□□□□ 0.72
PCNX3-202ENST00000439247 PBRM1Q86U86 1689 aa19.52■□□□□ 0.72
PCNX3-202ENST00000439247 CUL7Q14999 1698 aa19.49■□□□□ 0.71
PCNX3-202ENST00000439247 FKBP8Q14318 412 aa19.49■□□□□ 0.71
PCNX3-202ENST00000439247 GRIN2BQ13224 1484 aa19.49■□□□□ 0.71
PCNX3-202ENST00000439247 SNAPC4Q5SXM2 1469 aa19.45■□□□□ 0.7
PCNX3-202ENST00000439247 BCL11AQ9H165 835 aa19.45■□□□□ 0.7
PCNX3-202ENST00000439247 ARAP1Q96P48 1450 aa19.44■□□□□ 0.7
PCNX3-202ENST00000439247 DDX10Q13206 875 aaKnown RBP19.42■□□□□ 0.7
PCNX3-202ENST00000439247 ADAMTS12P58397 1594 aa19.42■□□□□ 0.7
PCNX3-202ENST00000439247 FHAD1B1AJZ9 1412 aa19.4■□□□□ 0.7
PCNX3-202ENST00000439247 HIRIP3Q9BW71 556 aaPredicted RBP19.4■□□□□ 0.7
PCNX3-202ENST00000439247 FBLN2P98095 1184 aa19.36■□□□□ 0.69
PCNX3-202ENST00000439247 RRBP1Q9P2E9 1410 aaKnown RBP19.35■□□□□ 0.69
PCNX3-202ENST00000439247 TRIM52Q96A61 297 aa19.34■□□□□ 0.69
PCNX3-202ENST00000439247 SIN3AQ96ST3 1273 aa19.34■□□□□ 0.69
PCNX3-202ENST00000439247 CCNB3Q8WWL7 1395 aa19.33■□□□□ 0.68
PCNX3-202ENST00000439247 P3H3Q8IVL6 736 aa19.32■□□□□ 0.68
PCNX3-202ENST00000439247 ARHGAP35Q9NRY4 1499 aa19.32■□□□□ 0.68
PCNX3-202ENST00000439247 RBM19Q9Y4C8 960 aaKnown RBP19.32■□□□□ 0.68
PCNX3-202ENST00000439247 RAB3GAP2Q9H2M9 1393 aa19.31■□□□□ 0.68
PCNX3-202ENST00000439247 CHMP7Q8WUX9 453 aaPredicted RBP19.3■□□□□ 0.68
PCNX3-202ENST00000439247 MAGI1Q96QZ7 1491 aaPredicted RBP19.3■□□□□ 0.68
PCNX3-202ENST00000439247 CTTNBP2Q8WZ74 1663 aa19.29■□□□□ 0.68
PCNX3-202ENST00000439247 GRIN2AQ12879 1464 aa19.28■□□□□ 0.68
PCNX3-202ENST00000439247 MAPKBP1O60336 1514 aa19.28■□□□□ 0.68
PCNX3-202ENST00000439247 SYNJ2O15056 1496 aa19.27■□□□□ 0.67
PCNX3-202ENST00000439247 FHOD3Q2V2M9 1422 aa19.21■□□□□ 0.67
PCNX3-202ENST00000439247 NEFLP07196 543 aa19.2■□□□□ 0.66
PCNX3-202ENST00000439247 CEP170Q5SW79 1584 aa19.2■□□□□ 0.66
PCNX3-202ENST00000439247 PPP1R15AO75807 674 aaPredicted RBP19.2■□□□□ 0.66
PCNX3-202ENST00000439247 MSH5O43196 834 aa19.18■□□□□ 0.66
PCNX3-202ENST00000439247 IQGAP2Q13576 1575 aa19.17■□□□□ 0.66
PCNX3-202ENST00000439247 FAM50AQ14320 339 aaKnown RBP19.16■□□□□ 0.66
PCNX3-202ENST00000439247 IRX6P78412 446 aaPredicted RBP19.14■□□□□ 0.66
PCNX3-202ENST00000439247 CHD1O14646 1710 aa19.13■□□□□ 0.65
PCNX3-202ENST00000439247 KIAA0586Q9BVV6 1533 aa19.13■□□□□ 0.65
PCNX3-202ENST00000439247 SLC24A1O60721 1099 aa19.13■□□□□ 0.65
PCNX3-202ENST00000439247 NUP160Q12769 1436 aa19.12■□□□□ 0.65
PCNX3-202ENST00000439247 SETD5Q9C0A6 1442 aa19.11■□□□□ 0.65
PCNX3-202ENST00000439247 SAMD9Q5K651 1589 aa19.11■□□□□ 0.65
PCNX3-202ENST00000439247 EFCAB5A4FU69 1503 aa19.1■□□□□ 0.65
PCNX3-202ENST00000439247 ANP32CO43423 234 aa19.09■□□□□ 0.65
PCNX3-202ENST00000439247 PHLDB1Q86UU1 1377 aa19.08■□□□□ 0.64
PCNX3-202ENST00000439247 ATP1B4Q9UN42 357 aaPredicted RBP19.07■□□□□ 0.64
PCNX3-202ENST00000439247 UGGT2Q9NYU1 1516 aa19.05■□□□□ 0.64
PCNX3-202ENST00000439247 JPH4Q96JJ6 628 aa19.05■□□□□ 0.64
PCNX3-202ENST00000439247 DISP1Q96F81 1524 aa19.04■□□□□ 0.64
PCNX3-202ENST00000439247 PCF11O94913 1555 aaKnown RBP19.03■□□□□ 0.64
PCNX3-202ENST00000439247 CCER2I3L3R5 266 aa19.02■□□□□ 0.63
PCNX3-202ENST00000439247 TIAM1Q13009 1591 aa18.99■□□□□ 0.63
PCNX3-202ENST00000439247 KIAA0556O60303 1618 aa18.99■□□□□ 0.63
PCNX3-202ENST00000439247 HNRNPUQ00839 825 aaKnown RBP eCLIP18.97■□□□□ 0.63
PCNX3-202ENST00000439247 FMN1Q68DA7 1419 aa18.96■□□□□ 0.63
PCNX3-202ENST00000439247 LRRC9Q6ZRR7 1453 aa18.96■□□□□ 0.63
PCNX3-202ENST00000439247 ARID3CA6NKF2 412 aa18.96■□□□□ 0.63
PCNX3-202ENST00000439247 CASKIN1Q8WXD9 1431 aa18.94■□□□□ 0.62
PCNX3-202ENST00000439247 PRG4Q92954 1404 aaPredicted RBP18.92■□□□□ 0.62
PCNX3-202ENST00000439247 FYCO1Q9BQS8 1478 aa18.92■□□□□ 0.62
PCNX3-202ENST00000439247 ERCC6L2Q5T890 1561 aa18.9■□□□□ 0.62
PCNX3-202ENST00000439247 LRRIQ1Q96JM4 1722 aa18.9■□□□□ 0.62
PCNX3-202ENST00000439247 CDK11AQ9UQ88 783 aaPredicted RBP18.89■□□□□ 0.61
PCNX3-202ENST00000439247 ERICH6Q7L0X2 663 aa18.88■□□□□ 0.61
PCNX3-202ENST00000439247 CLASP1Q7Z460 1538 aa18.87■□□□□ 0.61
PCNX3-202ENST00000439247 CARMIL2Q6F5E8 1435 aa18.87■□□□□ 0.61
PCNX3-202ENST00000439247 TONSLQ96HA7 1378 aa18.87■□□□□ 0.61
PCNX3-202ENST00000439247 PLB1Q6P1J6 1458 aa18.86■□□□□ 0.61
PCNX3-202ENST00000439247 TIMELESSQ9UNS1 1208 aa18.85■□□□□ 0.61
PCNX3-202ENST00000439247 FANCIQ9NVI1 1328 aa18.85■□□□□ 0.61
PCNX3-202ENST00000439247 SHROOM2Q13796 1616 aa18.84■□□□□ 0.61
PCNX3-202ENST00000439247 CCDC184Q52MB2 194 aa18.84■□□□□ 0.61
PCNX3-202ENST00000439247 PRKCSHP14314 528 aaPredicted RBP18.83■□□□□ 0.61
PCNX3-202ENST00000439247 CFAP43Q8NDM7 1665 aa18.82■□□□□ 0.6
PCNX3-202ENST00000439247 CDK13Q14004 1512 aaKnown RBP18.82■□□□□ 0.6
PCNX3-202ENST00000439247 MAP3K1Q13233 1512 aa18.81■□□□□ 0.6
PCNX3-202ENST00000439247 NUP153P49790 1475 aaKnown RBP18.79■□□□□ 0.6
PCNX3-202ENST00000439247 OSCARQ8IYS5 282 aa18.79■□□□□ 0.6
PCNX3-202ENST00000439247 B4GALNT3Q6L9W6 998 aa18.78■□□□□ 0.6
PCNX3-202ENST00000439247 EPRSP07814 1512 aaKnown RBP18.78■□□□□ 0.6
PCNX3-202ENST00000439247 HECW1Q76N89 1606 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms