RNA–Protein interactions for RNA: ENST00000436177.5

VPS50-203, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-203ENST00000436177 MAGI1Q96QZ7 1491 aaPredicted RBP13.87□□□□□ -0.19
VPS50-203ENST00000436177 SYNJ1O43426 1573 aa13.83□□□□□ -0.2
VPS50-203ENST00000436177 SYNJ2O15056 1496 aa13.81□□□□□ -0.2
VPS50-203ENST00000436177 ARAP1Q96P48 1450 aa13.81□□□□□ -0.2
VPS50-203ENST00000436177 GAPVD1Q14C86 1478 aa13.8□□□□□ -0.2
VPS50-203ENST00000436177 TRHP20396 242 aaPredicted RBP13.79□□□□□ -0.2
VPS50-203ENST00000436177 WRNQ14191 1432 aaPredicted RBP eCLIP13.78□□□□□ -0.2
VPS50-203ENST00000436177 ABCA10Q8WWZ4 1543 aa13.78□□□□□ -0.2
VPS50-203ENST00000436177 CLASP1Q7Z460 1538 aa13.76□□□□□ -0.21
VPS50-203ENST00000436177 PBRM1Q86U86 1689 aa13.72□□□□□ -0.21
VPS50-203ENST00000436177 ABCA5Q8WWZ7 1642 aa13.72□□□□□ -0.21
VPS50-203ENST00000436177 TOP2BQ02880 1626 aa13.68□□□□□ -0.22
VPS50-203ENST00000436177 GRIN2AQ12879 1464 aa13.67□□□□□ -0.22
VPS50-203ENST00000436177 BIVM-ERCC5R4GMW8 1640 aa13.65□□□□□ -0.22
VPS50-203ENST00000436177 ADAMTS12P58397 1594 aa13.65□□□□□ -0.22
VPS50-203ENST00000436177 FHAD1B1AJZ9 1412 aa13.64□□□□□ -0.23
VPS50-203ENST00000436177 KCNA4P22459 653 aa13.64□□□□□ -0.23
VPS50-203ENST00000436177 ERICH3Q5RHP9 1530 aa13.61□□□□□ -0.23
VPS50-203ENST00000436177 NUP160Q12769 1436 aa13.6□□□□□ -0.23
VPS50-203ENST00000436177 U3KPZ7 1027 aaPredicted RBP13.59□□□□□ -0.23
VPS50-203ENST00000436177 CEP170Q5SW79 1584 aa13.58□□□□□ -0.24
VPS50-203ENST00000436177 ERCC6L2Q5T890 1561 aa13.53□□□□□ -0.24
VPS50-203ENST00000436177 PRG4Q92954 1404 aaPredicted RBP13.51□□□□□ -0.25
VPS50-203ENST00000436177 SHROOM2Q13796 1616 aa13.5□□□□□ -0.25
VPS50-203ENST00000436177 KIF27Q86VH2 1401 aa13.49□□□□□ -0.25
VPS50-203ENST00000436177 JPH4Q96JJ6 628 aa13.49□□□□□ -0.25
VPS50-203ENST00000436177 CAPN15O75808 1086 aa13.47□□□□□ -0.25
VPS50-203ENST00000436177 SPINK5Q9NQ38 1064 aaPredicted RBP13.47□□□□□ -0.25
VPS50-203ENST00000436177 RUSC2Q8N2Y8 1516 aa13.45□□□□□ -0.26
VPS50-203ENST00000436177 NPM1P06748 294 aaKnown RBP eCLIP13.45□□□□□ -0.26
VPS50-203ENST00000436177 IGF1RP08069 1367 aa13.42□□□□□ -0.26
VPS50-203ENST00000436177 CUL7Q14999 1698 aa13.41□□□□□ -0.26
VPS50-203ENST00000436177 KIAA0586Q9BVV6 1533 aa13.41□□□□□ -0.26
VPS50-203ENST00000436177 SLC4A2P04920 1241 aa13.37□□□□□ -0.27
VPS50-203ENST00000436177 CARMIL1Q5VZK9 1371 aa13.36□□□□□ -0.27
VPS50-203ENST00000436177 DSG3P32926 999 aa13.35□□□□□ -0.27
VPS50-203ENST00000436177 CARMIL2Q6F5E8 1435 aa13.34□□□□□ -0.27
VPS50-203ENST00000436177 FAM69CQ0P6D2 419 aa13.34□□□□□ -0.27
VPS50-203ENST00000436177 TTBK1Q5TCY1 1321 aaPredicted RBP13.34□□□□□ -0.27
VPS50-203ENST00000436177 PTPRGP23470 1445 aa13.32□□□□□ -0.28
VPS50-203ENST00000436177 MAPKBP1O60336 1514 aa13.32□□□□□ -0.28
VPS50-203ENST00000436177 ABCC10Q5T3U5 1492 aa13.31□□□□□ -0.28
VPS50-203ENST00000436177 ADCY10Q96PN6 1610 aa13.3□□□□□ -0.28
VPS50-203ENST00000436177 TNIKQ9UKE5 1360 aa13.29□□□□□ -0.28
VPS50-203ENST00000436177 IQGAP2Q13576 1575 aa13.28□□□□□ -0.28
VPS50-203ENST00000436177 KIF13AQ9H1H9 1805 aa13.25□□□□□ -0.29
VPS50-203ENST00000436177 DIP2BQ9P265 1576 aa13.25□□□□□ -0.29
VPS50-203ENST00000436177 RAPGEF2Q9Y4G8 1499 aa13.24□□□□□ -0.29
VPS50-203ENST00000436177 ABCC2Q92887 1545 aa13.23□□□□□ -0.29
VPS50-203ENST00000436177 PLB1Q6P1J6 1458 aa13.2□□□□□ -0.3
VPS50-203ENST00000436177 UACAQ9BZF9 1416 aa13.2□□□□□ -0.3
VPS50-203ENST00000436177 KDM6BO15054 1643 aa13.18□□□□□ -0.3
VPS50-203ENST00000436177 ASXL2Q76L83 1435 aa13.18□□□□□ -0.3
VPS50-203ENST00000436177 UHRF1BP1LA0JNW5 1464 aa13.17□□□□□ -0.3
VPS50-203ENST00000436177 ABCB7O75027 752 aa13.17□□□□□ -0.3
VPS50-203ENST00000436177 DISP1Q96F81 1524 aa13.17□□□□□ -0.3
VPS50-203ENST00000436177 UGGT2Q9NYU1 1516 aa13.17□□□□□ -0.3
VPS50-203ENST00000436177 FAM9AQ8IZU1 332 aaPredicted RBP13.14□□□□□ -0.31
VPS50-203ENST00000436177 GOLGA3Q08378 1498 aa13.14□□□□□ -0.31
VPS50-203ENST00000436177 KIAA0556O60303 1618 aa13.13□□□□□ -0.31
VPS50-203ENST00000436177 APLP2Q06481 763 aa13.13□□□□□ -0.31
VPS50-203ENST00000436177 TSPOAP1O95153 1857 aa13.12□□□□□ -0.31
VPS50-203ENST00000436177 ZNF219Q9P2Y4 722 aaPredicted RBP13.11□□□□□ -0.31
VPS50-203ENST00000436177 KDM5BQ9UGL1 1544 aa13.11□□□□□ -0.31
VPS50-203ENST00000436177 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.1□□□□□ -0.31
VPS50-203ENST00000436177 HNRNPUL2Q1KMD3 747 aaKnown RBP13.1□□□□□ -0.31
VPS50-203ENST00000436177 GLI2P10070 1586 aa13.1□□□□□ -0.31
VPS50-203ENST00000436177 TEX14Q8IWB6 1497 aa13.09□□□□□ -0.31
VPS50-203ENST00000436177 EPRSP07814 1512 aaKnown RBP13.08□□□□□ -0.32
VPS50-203ENST00000436177 PRXQ9BXM0 1461 aa13.07□□□□□ -0.32
VPS50-203ENST00000436177 CTTNBP2Q8WZ74 1663 aa13.07□□□□□ -0.32
VPS50-203ENST00000436177 WDR7Q9Y4E6 1490 aa13.06□□□□□ -0.32
VPS50-203ENST00000436177 ZCCHC11Q5TAX3 1644 aaKnown RBP13.06□□□□□ -0.32
VPS50-203ENST00000436177 SAMD1Q6SPF0 538 aaPredicted RBP13.04□□□□□ -0.32
VPS50-203ENST00000436177 CSRNP3Q8WYN3 585 aa13.01□□□□□ -0.33
VPS50-203ENST00000436177 KCNH8Q96L42 1107 aa13.01□□□□□ -0.33
VPS50-203ENST00000436177 MAP3K4Q9Y6R4 1608 aa13.01□□□□□ -0.33
VPS50-203ENST00000436177 ABCA8O94911 1581 aa13□□□□□ -0.33
VPS50-203ENST00000436177 PPRC1Q5VV67 1664 aaKnown RBP12.99□□□□□ -0.33
VPS50-203ENST00000436177 CD109Q6YHK3 1445 aa12.99□□□□□ -0.33
VPS50-203ENST00000436177 KDM4FA0A1W2PPD8 638 aa12.99□□□□□ -0.33
VPS50-203ENST00000436177 ARID3CA6NKF2 412 aa12.99□□□□□ -0.33
VPS50-203ENST00000436177 P3H3Q8IVL6 736 aa12.99□□□□□ -0.33
VPS50-203ENST00000436177 EEA1Q15075 1411 aa12.98□□□□□ -0.33
VPS50-203ENST00000436177 POTEHQ6S545 545 aa12.98□□□□□ -0.33
VPS50-203ENST00000436177 ADGRL1O94910 1474 aa12.96□□□□□ -0.34
VPS50-203ENST00000436177 COL17A1Q9UMD9 1497 aaPredicted RBP12.95□□□□□ -0.34
VPS50-203ENST00000436177 MAGI3Q5TCQ9 1506 aa12.94□□□□□ -0.34
VPS50-203ENST00000436177 RANGAP1P46060 587 aaPredicted RBP12.94□□□□□ -0.34
VPS50-203ENST00000436177 CFAP43Q8NDM7 1665 aa12.93□□□□□ -0.34
VPS50-203ENST00000436177 MYCNP04198 464 aaPredicted RBP12.91□□□□□ -0.34
VPS50-203ENST00000436177 ATP10BO94823 1461 aa12.9□□□□□ -0.34
VPS50-203ENST00000436177 SAMD9Q5K651 1589 aa12.9□□□□□ -0.35
VPS50-203ENST00000436177 RAPGEF6Q8TEU7 1601 aa12.88□□□□□ -0.35
VPS50-203ENST00000436177 FHOD3Q2V2M9 1422 aa12.87□□□□□ -0.35
VPS50-203ENST00000436177 PHLDB1Q86UU1 1377 aa12.86□□□□□ -0.35
VPS50-203ENST00000436177 SLC4A1APQ9BWU0 796 aaKnown RBP12.84□□□□□ -0.35
VPS50-203ENST00000436177 NUP153P49790 1475 aaKnown RBP12.84□□□□□ -0.35
VPS50-203ENST00000436177 EFCAB5A4FU69 1503 aa12.83□□□□□ -0.35
VPS50-203ENST00000436177 ARAP3Q8WWN8 1544 aa12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms