RNA–Protein interactions for RNA: ENST00000426840.1

LINC01049-201, Transcript of long intergenic non-protein coding RNA 1049, humanhuman

TSL 1 (best) BASIC

Gene LINC01049, Length 742 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01049-201ENST00000426840 MKRN4PQ13434 485 aaPredicted RBP12.78□□□□□ -0.36
LINC01049-201ENST00000426840 WRNQ14191 1432 aaPredicted RBP eCLIP12.78□□□□□ -0.36
LINC01049-201ENST00000426840 POLA1P09884 1462 aaPredicted RBP12.75□□□□□ -0.37
LINC01049-201ENST00000426840 OSCARQ8IYS5 282 aa12.75□□□□□ -0.37
LINC01049-201ENST00000426840 FGD5Q6ZNL6 1462 aa12.74□□□□□ -0.37
LINC01049-201ENST00000426840 IFT140Q96RY7 1462 aa12.73□□□□□ -0.37
LINC01049-201ENST00000426840 SOGA1O94964 1423 aa12.73□□□□□ -0.37
LINC01049-201ENST00000426840 SYNJ1O43426 1573 aa12.73□□□□□ -0.37
LINC01049-201ENST00000426840 RAD54L2Q9Y4B4 1467 aa12.72□□□□□ -0.37
LINC01049-201ENST00000426840 TOP2BQ02880 1626 aa12.72□□□□□ -0.37
LINC01049-201ENST00000426840 TARBP1Q13395 1621 aaKnown RBP12.7□□□□□ -0.38
LINC01049-201ENST00000426840 BIVM-ERCC5R4GMW8 1640 aa12.7□□□□□ -0.38
LINC01049-201ENST00000426840 ZNF608Q9ULD9 1512 aaPredicted RBP12.69□□□□□ -0.38
LINC01049-201ENST00000426840 TDRD9Q8NDG6 1382 aaKnown RBP12.66□□□□□ -0.38
LINC01049-201ENST00000426840 AQRO60306 1485 aaKnown RBP eCLIP12.65□□□□□ -0.38
LINC01049-201ENST00000426840 RBM42Q9BTD8 480 aaKnown RBP12.63□□□□□ -0.39
LINC01049-201ENST00000426840 ABCA10Q8WWZ4 1543 aa12.62□□□□□ -0.39
LINC01049-201ENST00000426840 TRIM41Q8WV44 630 aa12.6□□□□□ -0.39
LINC01049-201ENST00000426840 EIF4G3O43432 1585 aaKnown RBP12.59□□□□□ -0.39
LINC01049-201ENST00000426840 WDR97A6NE52 1622 aa12.59□□□□□ -0.39
LINC01049-201ENST00000426840 GAPVD1Q14C86 1478 aa12.56□□□□□ -0.4
LINC01049-201ENST00000426840 GRIN2BQ13224 1484 aa12.54□□□□□ -0.4
LINC01049-201ENST00000426840 ABCA5Q8WWZ7 1642 aa12.54□□□□□ -0.4
LINC01049-201ENST00000426840 SPDYE2BA6NHP3 402 aa12.51□□□□□ -0.41
LINC01049-201ENST00000426840 SPDYE6P0CI01 402 aa12.51□□□□□ -0.41
LINC01049-201ENST00000426840 SPDYE2Q495Y8 402 aa12.51□□□□□ -0.41
LINC01049-201ENST00000426840 ZNF692Q9BU19 519 aaPredicted RBP12.5□□□□□ -0.41
LINC01049-201ENST00000426840 SNAPC4Q5SXM2 1469 aa12.49□□□□□ -0.41
LINC01049-201ENST00000426840 KIF27Q86VH2 1401 aa12.49□□□□□ -0.41
LINC01049-201ENST00000426840 IGF1RP08069 1367 aa12.49□□□□□ -0.41
LINC01049-201ENST00000426840 PBRM1Q86U86 1689 aa12.48□□□□□ -0.41
LINC01049-201ENST00000426840 RUSC2Q8N2Y8 1516 aa12.47□□□□□ -0.41
LINC01049-201ENST00000426840 MAGI1Q96QZ7 1491 aaPredicted RBP12.47□□□□□ -0.41
LINC01049-201ENST00000426840 ERICH3Q5RHP9 1530 aa12.47□□□□□ -0.41
LINC01049-201ENST00000426840 CHMP7Q8WUX9 453 aaPredicted RBP12.46□□□□□ -0.41
LINC01049-201ENST00000426840 AKT1S1Q96B36 256 aa12.45□□□□□ -0.42
LINC01049-201ENST00000426840 DNAJC5Q9H3Z4 198 aa12.45□□□□□ -0.42
LINC01049-201ENST00000426840 SYNJ2O15056 1496 aa12.43□□□□□ -0.42
LINC01049-201ENST00000426840 SPDYE4A6NLX3 237 aa12.43□□□□□ -0.42
LINC01049-201ENST00000426840 FHAD1B1AJZ9 1412 aa12.43□□□□□ -0.42
LINC01049-201ENST00000426840 CHD1O14646 1710 aa12.41□□□□□ -0.42
LINC01049-201ENST00000426840 SSUH2Q9Y2M2 353 aa12.4□□□□□ -0.42
LINC01049-201ENST00000426840 ADAMTS12P58397 1594 aa12.39□□□□□ -0.43
LINC01049-201ENST00000426840 CARMIL1Q5VZK9 1371 aa12.39□□□□□ -0.43
LINC01049-201ENST00000426840 REM2Q8IYK8 340 aaPredicted RBP12.38□□□□□ -0.43
LINC01049-201ENST00000426840 GRIN2AQ12879 1464 aa12.37□□□□□ -0.43
LINC01049-201ENST00000426840 FAM9AQ8IZU1 332 aaPredicted RBP12.35□□□□□ -0.43
LINC01049-201ENST00000426840 CUL7Q14999 1698 aa12.35□□□□□ -0.43
LINC01049-201ENST00000426840 FKBP8Q14318 412 aa12.34□□□□□ -0.43
LINC01049-201ENST00000426840 EEA1Q15075 1411 aa12.34□□□□□ -0.43
LINC01049-201ENST00000426840 NUP160Q12769 1436 aa12.32□□□□□ -0.44
LINC01049-201ENST00000426840 PRXQ9BXM0 1461 aa12.31□□□□□ -0.44
LINC01049-201ENST00000426840 RAPGEF2Q9Y4G8 1499 aa12.31□□□□□ -0.44
LINC01049-201ENST00000426840 CEP170Q5SW79 1584 aa12.3□□□□□ -0.44
LINC01049-201ENST00000426840 CLASP1Q7Z460 1538 aa12.3□□□□□ -0.44
LINC01049-201ENST00000426840 JPH4Q96JJ6 628 aa12.26□□□□□ -0.45
LINC01049-201ENST00000426840 PITPNM1O00562 1244 aa12.25□□□□□ -0.45
LINC01049-201ENST00000426840 CLEC11AQ9Y240 323 aa12.25□□□□□ -0.45
LINC01049-201ENST00000426840 KIAA0586Q9BVV6 1533 aa12.25□□□□□ -0.45
LINC01049-201ENST00000426840 CHRDL2Q6WN34 429 aa12.21□□□□□ -0.45
LINC01049-201ENST00000426840 ARHGEF11O15085 1522 aa12.21□□□□□ -0.46
LINC01049-201ENST00000426840 SPDYE1Q8NFV5 336 aaPredicted RBP12.2□□□□□ -0.46
LINC01049-201ENST00000426840 RIMBP3CA6NJZ7 1639 aa12.19□□□□□ -0.46
LINC01049-201ENST00000426840 RIMBP3BA6NNM3 1639 aa12.19□□□□□ -0.46
LINC01049-201ENST00000426840 SHROOM2Q13796 1616 aa12.19□□□□□ -0.46
LINC01049-201ENST00000426840 RIMBP3Q9UFD9 1639 aa12.19□□□□□ -0.46
LINC01049-201ENST00000426840 PRG4Q92954 1404 aaPredicted RBP12.18□□□□□ -0.46
LINC01049-201ENST00000426840 KIF21BO75037 1637 aa12.18□□□□□ -0.46
LINC01049-201ENST00000426840 ERCC6L2Q5T890 1561 aa12.17□□□□□ -0.46
LINC01049-201ENST00000426840 IQGAP2Q13576 1575 aa12.15□□□□□ -0.46
LINC01049-201ENST00000426840 CYB5RLQ6IPT4 315 aa12.15□□□□□ -0.46
LINC01049-201ENST00000426840 ARAP1Q96P48 1450 aa12.14□□□□□ -0.47
LINC01049-201ENST00000426840 UBTFP17480 764 aaKnown RBP12.13□□□□□ -0.47
LINC01049-201ENST00000426840 GOLGA3Q08378 1498 aa12.13□□□□□ -0.47
LINC01049-201ENST00000426840 CTTNBP2Q8WZ74 1663 aa12.13□□□□□ -0.47
LINC01049-201ENST00000426840 UGGT2Q9NYU1 1516 aa12.12□□□□□ -0.47
LINC01049-201ENST00000426840 DISP1Q96F81 1524 aa12.11□□□□□ -0.47
LINC01049-201ENST00000426840 PROM2Q8N271 834 aa12.1□□□□□ -0.47
LINC01049-201ENST00000426840 CARMIL2Q6F5E8 1435 aa12.1□□□□□ -0.47
LINC01049-201ENST00000426840 LOC105371045A0A1W2PR82 267 aa12.08□□□□□ -0.48
LINC01049-201ENST00000426840 TNIKQ9UKE5 1360 aa12.07□□□□□ -0.48
LINC01049-201ENST00000426840 PTPRGP23470 1445 aa12.06□□□□□ -0.48
LINC01049-201ENST00000426840 PRR29P0C7W0 189 aa12.06□□□□□ -0.48
LINC01049-201ENST00000426840 RANGAP1P46060 587 aaPredicted RBP12.06□□□□□ -0.48
LINC01049-201ENST00000426840 P3H3Q8IVL6 736 aa12.05□□□□□ -0.48
LINC01049-201ENST00000426840 TTBK1Q5TCY1 1321 aaPredicted RBP12.04□□□□□ -0.48
LINC01049-201ENST00000426840 KIAA0556O60303 1618 aa12.04□□□□□ -0.48
LINC01049-201ENST00000426840 PIP4P2Q8N4L2 257 aa12.03□□□□□ -0.48
LINC01049-201ENST00000426840 STAG3Q9UJ98 1225 aa12.03□□□□□ -0.48
LINC01049-201ENST00000426840 SAMD9Q5K651 1589 aa12.01□□□□□ -0.49
LINC01049-201ENST00000426840 FXR2P51116 673 aaKnown RBP eCLIP12□□□□□ -0.49
LINC01049-201ENST00000426840 POTEHQ6S545 545 aa12□□□□□ -0.49
LINC01049-201ENST00000426840 ARHGAP35Q9NRY4 1499 aa11.97□□□□□ -0.49
LINC01049-201ENST00000426840 UACAQ9BZF9 1416 aa11.97□□□□□ -0.49
LINC01049-201ENST00000426840 EFCAB5A4FU69 1503 aa11.96□□□□□ -0.49
LINC01049-201ENST00000426840 FHOD3Q2V2M9 1422 aa11.96□□□□□ -0.49
LINC01049-201ENST00000426840 CHADLQ6NUI6 762 aa11.96□□□□□ -0.49
LINC01049-201ENST00000426840 PRKAR2AP13861 404 aaKnown RBP11.95□□□□□ -0.5
LINC01049-201ENST00000426840 UHRF1BP1LA0JNW5 1464 aa11.95□□□□□ -0.5
LINC01049-201ENST00000426840 PLB1Q6P1J6 1458 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms