RNA–Protein interactions for RNA: ENST00000425562.6

LRCH3-203, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LRCH3, Length 2,970 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-203ENST00000425562 SIN3AQ96ST3 1273 aa19.23■□□□□ 0.67
LRCH3-203ENST00000425562 IRX6P78412 446 aaPredicted RBP19.22■□□□□ 0.67
LRCH3-203ENST00000425562 NEFLP07196 543 aa19.2■□□□□ 0.66
LRCH3-203ENST00000425562 CCNB3Q8WWL7 1395 aa19.2■□□□□ 0.66
LRCH3-203ENST00000425562 FAM50AQ14320 339 aaKnown RBP19.19■□□□□ 0.66
LRCH3-203ENST00000425562 IGF1RP08069 1367 aa19.19■□□□□ 0.66
LRCH3-203ENST00000425562 RRBP1Q9P2E9 1410 aaKnown RBP19.14■□□□□ 0.65
LRCH3-203ENST00000425562 CARMIL1Q5VZK9 1371 aa19.13■□□□□ 0.65
LRCH3-203ENST00000425562 FGD5Q6ZNL6 1462 aa19.12■□□□□ 0.65
LRCH3-203ENST00000425562 RAB3GAP2Q9H2M9 1393 aa19.1■□□□□ 0.65
LRCH3-203ENST00000425562 CADPSQ9ULU8 1353 aa19.1■□□□□ 0.65
LRCH3-203ENST00000425562 MSH5O43196 834 aa19.08■□□□□ 0.65
LRCH3-203ENST00000425562 PHLDB1Q86UU1 1377 aa19.05■□□□□ 0.64
LRCH3-203ENST00000425562 RAD54L2Q9Y4B4 1467 aa19.04■□□□□ 0.64
LRCH3-203ENST00000425562 FHOD3Q2V2M9 1422 aa19.01■□□□□ 0.63
LRCH3-203ENST00000425562 ANP32CO43423 234 aa18.99■□□□□ 0.63
LRCH3-203ENST00000425562 TIAM1Q13009 1591 aa18.99■□□□□ 0.63
LRCH3-203ENST00000425562 ERICH6Q7L0X2 663 aa18.99■□□□□ 0.63
LRCH3-203ENST00000425562 NESP48681 1621 aa18.97■□□□□ 0.63
LRCH3-203ENST00000425562 LRRC9Q6ZRR7 1453 aa18.96■□□□□ 0.63
LRCH3-203ENST00000425562 FANCD2Q9BXW9 1451 aa18.96■□□□□ 0.63
LRCH3-203ENST00000425562 WDR97A6NE52 1622 aa18.95■□□□□ 0.62
LRCH3-203ENST00000425562 CC2D2AQ9P2K1 1620 aa18.95■□□□□ 0.62
LRCH3-203ENST00000425562 MAPKBP1O60336 1514 aa18.94■□□□□ 0.62
LRCH3-203ENST00000425562 PPP1R15AO75807 674 aaPredicted RBP18.94■□□□□ 0.62
LRCH3-203ENST00000425562 HNRNPUQ00839 825 aaKnown RBP eCLIP18.94■□□□□ 0.62
LRCH3-203ENST00000425562 SETD5Q9C0A6 1442 aa18.94■□□□□ 0.62
LRCH3-203ENST00000425562 PRDM2Q13029 1718 aa18.93■□□□□ 0.62
LRCH3-203ENST00000425562 PCF11O94913 1555 aaKnown RBP18.92■□□□□ 0.62
LRCH3-203ENST00000425562 CNGB1Q14028 1251 aaPredicted RBP18.9■□□□□ 0.62
LRCH3-203ENST00000425562 DNAJC5BQ9UF47 199 aa18.9■□□□□ 0.62
LRCH3-203ENST00000425562 SENP3-EIF4A1A0A087X0R7 540 aa18.86■□□□□ 0.61
LRCH3-203ENST00000425562 FHAD1B1AJZ9 1412 aa18.85■□□□□ 0.61
LRCH3-203ENST00000425562 CDK11AQ9UQ88 783 aaPredicted RBP18.85■□□□□ 0.61
LRCH3-203ENST00000425562 POLA1P09884 1462 aaPredicted RBP18.85■□□□□ 0.61
LRCH3-203ENST00000425562 TDRD9Q8NDG6 1382 aaKnown RBP18.84■□□□□ 0.61
LRCH3-203ENST00000425562 ARID3CA6NKF2 412 aa18.84■□□□□ 0.61
LRCH3-203ENST00000425562 TOPBP1Q92547 1522 aa18.81■□□□□ 0.6
LRCH3-203ENST00000425562 NBR1Q14596 966 aa18.79■□□□□ 0.6
LRCH3-203ENST00000425562 B4GALNT3Q6L9W6 998 aa18.78■□□□□ 0.6
LRCH3-203ENST00000425562 MAP3K1Q13233 1512 aa18.76■□□□□ 0.59
LRCH3-203ENST00000425562 MTUS2Q5JR59 1369 aa18.75■□□□□ 0.59
LRCH3-203ENST00000425562 CCER2I3L3R5 266 aa18.75■□□□□ 0.59
LRCH3-203ENST00000425562 CHIC2Q9UKJ5 165 aa18.75■□□□□ 0.59
LRCH3-203ENST00000425562 DNMBPQ6XZF7 1577 aa18.75■□□□□ 0.59
LRCH3-203ENST00000425562 CFAP43Q8NDM7 1665 aa18.74■□□□□ 0.59
LRCH3-203ENST00000425562 ABCA10Q8WWZ4 1543 aa18.73■□□□□ 0.59
LRCH3-203ENST00000425562 CCDC184Q52MB2 194 aa18.73■□□□□ 0.59
LRCH3-203ENST00000425562 FAM9BQ8IZU0 186 aa18.73■□□□□ 0.59
LRCH3-203ENST00000425562 TONSLQ96HA7 1378 aa18.71■□□□□ 0.59
LRCH3-203ENST00000425562 CASKIN1Q8WXD9 1431 aa18.71■□□□□ 0.59
LRCH3-203ENST00000425562 RRP7BPQ9NSQ0 103 aa18.7■□□□□ 0.58
LRCH3-203ENST00000425562 FYCO1Q9BQS8 1478 aa18.7■□□□□ 0.58
LRCH3-203ENST00000425562 PTPRKQ15262 1439 aa18.69■□□□□ 0.58
LRCH3-203ENST00000425562 DEKP35659 375 aaKnown RBP18.69■□□□□ 0.58
LRCH3-203ENST00000425562 URB2Q14146 1524 aaKnown RBP18.68■□□□□ 0.58
LRCH3-203ENST00000425562 FGD6Q6ZV73 1430 aa18.68■□□□□ 0.58
LRCH3-203ENST00000425562 FANCIQ9NVI1 1328 aa18.64■□□□□ 0.58
LRCH3-203ENST00000425562 FMN1Q68DA7 1419 aa18.64■□□□□ 0.57
LRCH3-203ENST00000425562 CTTNBP2Q8WZ74 1663 aa18.63■□□□□ 0.57
LRCH3-203ENST00000425562 CCDC18Q5T9S5 1454 aa18.63■□□□□ 0.57
LRCH3-203ENST00000425562 EFCAB5A4FU69 1503 aa18.61■□□□□ 0.57
LRCH3-203ENST00000425562 SNAPC4Q5SXM2 1469 aa18.61■□□□□ 0.57
LRCH3-203ENST00000425562 PAK3O75914 559 aaPredicted RBP18.61■□□□□ 0.57
LRCH3-203ENST00000425562 GAPVD1Q14C86 1478 aa18.6■□□□□ 0.57
LRCH3-203ENST00000425562 FOXD1Q16676 465 aa18.6■□□□□ 0.57
LRCH3-203ENST00000425562 CUL7Q14999 1698 aa18.59■□□□□ 0.57
LRCH3-203ENST00000425562 AQRO60306 1485 aaKnown RBP eCLIP18.58■□□□□ 0.572e-6■■□□□ 12.8
LRCH3-203ENST00000425562 NCOA2Q15596 1464 aa18.58■□□□□ 0.57
LRCH3-203ENST00000425562 LRRIQ1Q96JM4 1722 aa18.58■□□□□ 0.56
LRCH3-203ENST00000425562 POLR3GLQ9BT43 218 aa18.57■□□□□ 0.56
LRCH3-203ENST00000425562 HSPA5P11021 654 aaKnown RBP18.56■□□□□ 0.56
LRCH3-203ENST00000425562 PPP4R2Q9NY27 417 aa18.56■□□□□ 0.56
LRCH3-203ENST00000425562 WASHC2AQ641Q2 1341 aa18.55■□□□□ 0.56
LRCH3-203ENST00000425562 MRS2Q9HD23 443 aa18.54■□□□□ 0.56
LRCH3-203ENST00000425562 NAIPQ13075 1403 aa18.53■□□□□ 0.56
LRCH3-203ENST00000425562 MYOM3Q5VTT5 1437 aa18.52■□□□□ 0.56
LRCH3-203ENST00000425562 TIMELESSQ9UNS1 1208 aa18.51■□□□□ 0.55
LRCH3-203ENST00000425562 HFM1A2PYH4 1435 aa18.51■□□□□ 0.55
LRCH3-203ENST00000425562 PTPN23Q9H3S7 1636 aa18.51■□□□□ 0.55
LRCH3-203ENST00000425562 UACAQ9BZF9 1416 aa18.5■□□□□ 0.55
LRCH3-203ENST00000425562 RTN4Q9NQC3 1192 aaKnown RBP18.5■□□□□ 0.55
LRCH3-203ENST00000425562 MAGI3Q5TCQ9 1506 aa18.5■□□□□ 0.55
LRCH3-203ENST00000425562 GRIN2BQ13224 1484 aa18.49■□□□□ 0.55
LRCH3-203ENST00000425562 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.49■□□□□ 0.55
LRCH3-203ENST00000425562 C11orf95C9JLR9 678 aaPredicted RBP18.48■□□□□ 0.55
LRCH3-203ENST00000425562 NOP58Q9Y2X3 529 aaKnown RBP18.48■□□□□ 0.55
LRCH3-203ENST00000425562 ABCA5Q8WWZ7 1642 aa18.47■□□□□ 0.55
LRCH3-203ENST00000425562 KIF21AQ7Z4S6 1674 aa18.46■□□□□ 0.55
LRCH3-203ENST00000425562 PDS5BQ9NTI5 1447 aa18.46■□□□□ 0.55
LRCH3-203ENST00000425562 SAMD9Q5K651 1589 aa18.46■□□□□ 0.55
LRCH3-203ENST00000425562 ANO8Q9HCE9 1232 aaPredicted RBP18.45■□□□□ 0.54
LRCH3-203ENST00000425562 LAMC3Q9Y6N6 1575 aa18.45■□□□□ 0.54
LRCH3-203ENST00000425562 NPM2Q86SE8 214 aaKnown RBP18.45■□□□□ 0.54
LRCH3-203ENST00000425562 CDK13Q14004 1512 aaKnown RBP18.45■□□□□ 0.54
LRCH3-203ENST00000425562 SUPT6HQ7KZ85 1726 aaKnown RBP18.44■□□□□ 0.54
LRCH3-203ENST00000425562 ZNF644Q9H582 1327 aaPredicted RBP18.42■□□□□ 0.54
LRCH3-203ENST00000425562 KDM6BO15054 1643 aa18.41■□□□□ 0.54
LRCH3-203ENST00000425562 PRKCSHP14314 528 aaPredicted RBP18.41■□□□□ 0.54
LRCH3-203ENST00000425562 EIF4G2P78344 907 aaKnown RBP eCLIP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms