RNA–Protein interactions for RNA: ENST00000418310.5

LIMK1-202, Transcript of LIM domain kinase 1, humanhuman

TSL 5 BASIC

Gene LIMK1, Length 3,360 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-202ENST00000418310 DDX10Q13206 875 aaKnown RBP17.15■□□□□ 0.34
LIMK1-202ENST00000418310 FHOD3Q2V2M9 1422 aa17.13■□□□□ 0.33
LIMK1-202ENST00000418310 RAD54L2Q9Y4B4 1467 aa17.12■□□□□ 0.33
LIMK1-202ENST00000418310 BCANQ96GW7 911 aa17.1■□□□□ 0.33
LIMK1-202ENST00000418310 ARID3CA6NKF2 412 aa17.07■□□□□ 0.32
LIMK1-202ENST00000418310 SETD5Q9C0A6 1442 aa17.06■□□□□ 0.32
LIMK1-202ENST00000418310 SUPT16HQ9Y5B9 1047 aaKnown RBP17.06■□□□□ 0.32
LIMK1-202ENST00000418310 LRRC9Q6ZRR7 1453 aa17.06■□□□□ 0.32
LIMK1-202ENST00000418310 TIAM1Q13009 1591 aa17.06■□□□□ 0.32
LIMK1-202ENST00000418310 NESP48681 1621 aa17.05■□□□□ 0.32
LIMK1-202ENST00000418310 FANCD2Q9BXW9 1451 aa17.04■□□□□ 0.32
LIMK1-202ENST00000418310 MAPKBP1O60336 1514 aa17.02■□□□□ 0.31
LIMK1-202ENST00000418310 PCF11O94913 1555 aaKnown RBP16.99■□□□□ 0.31
LIMK1-202ENST00000418310 TDRD9Q8NDG6 1382 aaKnown RBP16.99■□□□□ 0.31
LIMK1-202ENST00000418310 FHAD1B1AJZ9 1412 aa16.98■□□□□ 0.31
LIMK1-202ENST00000418310 CC2D2AQ9P2K1 1620 aa16.98■□□□□ 0.31
LIMK1-202ENST00000418310 DNAJC5BQ9UF47 199 aa16.97■□□□□ 0.31
LIMK1-202ENST00000418310 WDR97A6NE52 1622 aa16.97■□□□□ 0.31
LIMK1-202ENST00000418310 TRIM52Q96A61 297 aa16.96■□□□□ 0.31
LIMK1-202ENST00000418310 CHIC2Q9UKJ5 165 aa16.95■□□□□ 0.3
LIMK1-202ENST00000418310 MTUS2Q5JR59 1369 aa16.94■□□□□ 0.3
LIMK1-202ENST00000418310 POLA1P09884 1462 aaPredicted RBP16.93■□□□□ 0.3
LIMK1-202ENST00000418310 RRP7BPQ9NSQ0 103 aa16.9■□□□□ 0.3
LIMK1-202ENST00000418310 TOPBP1Q92547 1522 aa16.89■□□□□ 0.29
LIMK1-202ENST00000418310 FKBP8Q14318 412 aa16.89■□□□□ 0.29
LIMK1-202ENST00000418310 TONSLQ96HA7 1378 aa16.88■□□□□ 0.29
LIMK1-202ENST00000418310 PPP1R15AO75807 674 aaPredicted RBP16.87■□□□□ 0.29
LIMK1-202ENST00000418310 PRDM2Q13029 1718 aa16.86■□□□□ 0.29
LIMK1-202ENST00000418310 ANP32CO43423 234 aa16.85■□□□□ 0.29
LIMK1-202ENST00000418310 MAP3K1Q13233 1512 aa16.83■□□□□ 0.28
LIMK1-202ENST00000418310 CASKIN1Q8WXD9 1431 aa16.82■□□□□ 0.28
LIMK1-202ENST00000418310 FGD6Q6ZV73 1430 aa16.82■□□□□ 0.28
LIMK1-202ENST00000418310 ABCA10Q8WWZ4 1543 aa16.82■□□□□ 0.28
LIMK1-202ENST00000418310 DNMBPQ6XZF7 1577 aa16.81■□□□□ 0.28
LIMK1-202ENST00000418310 PTPRKQ15262 1439 aa16.81■□□□□ 0.28
LIMK1-202ENST00000418310 CNGB1Q14028 1251 aaPredicted RBP16.81■□□□□ 0.28
LIMK1-202ENST00000418310 FYCO1Q9BQS8 1478 aa16.8■□□□□ 0.28
LIMK1-202ENST00000418310 FOXD1Q16676 465 aa16.8■□□□□ 0.28
LIMK1-202ENST00000418310 CCDC18Q5T9S5 1454 aa16.78■□□□□ 0.28
LIMK1-202ENST00000418310 TSHZ2Q9NRE2 1034 aa16.78■□□□□ 0.28
LIMK1-202ENST00000418310 CFAP43Q8NDM7 1665 aa16.78■□□□□ 0.28
LIMK1-202ENST00000418310 FMN1Q68DA7 1419 aa16.78■□□□□ 0.28
LIMK1-202ENST00000418310 URB2Q14146 1524 aaKnown RBP16.77■□□□□ 0.27
LIMK1-202ENST00000418310 NEFLP07196 543 aa16.75■□□□□ 0.27
LIMK1-202ENST00000418310 IRX6P78412 446 aaPredicted RBP16.74■□□□□ 0.27
LIMK1-202ENST00000418310 GAPVD1Q14C86 1478 aa16.73■□□□□ 0.27
LIMK1-202ENST00000418310 NCOA2Q15596 1464 aa16.73■□□□□ 0.27
LIMK1-202ENST00000418310 AQRO60306 1485 aaKnown RBP eCLIP16.72■□□□□ 0.273e-6■■■■□ 24
LIMK1-202ENST00000418310 EFCAB5A4FU69 1503 aa16.71■□□□□ 0.27
LIMK1-202ENST00000418310 SNAPC4Q5SXM2 1469 aa16.7■□□□□ 0.26
LIMK1-202ENST00000418310 MYT1Q01538 1121 aa16.7■□□□□ 0.26
LIMK1-202ENST00000418310 HNRNPUQ00839 825 aaKnown RBP eCLIP16.69■□□□□ 0.26
LIMK1-202ENST00000418310 TIMELESSQ9UNS1 1208 aa16.68■□□□□ 0.26
LIMK1-202ENST00000418310 NAIPQ13075 1403 aa16.67■□□□□ 0.26
LIMK1-202ENST00000418310 MYOM3Q5VTT5 1437 aa16.67■□□□□ 0.26
LIMK1-202ENST00000418310 CTTNBP2Q8WZ74 1663 aa16.67■□□□□ 0.26
LIMK1-202ENST00000418310 UACAQ9BZF9 1416 aa16.66■□□□□ 0.26
LIMK1-202ENST00000418310 HFM1A2PYH4 1435 aa16.66■□□□□ 0.26
LIMK1-202ENST00000418310 HSPA5P11021 654 aaKnown RBP16.66■□□□□ 0.26
LIMK1-202ENST00000418310 CUL7Q14999 1698 aa16.66■□□□□ 0.26
LIMK1-202ENST00000418310 POLR3GLQ9BT43 218 aa16.65■□□□□ 0.26
LIMK1-202ENST00000418310 SENP3-EIF4A1A0A087X0R7 540 aa16.63■□□□□ 0.25
LIMK1-202ENST00000418310 PTPN23Q9H3S7 1636 aa16.63■□□□□ 0.25
LIMK1-202ENST00000418310 ZNF644Q9H582 1327 aaPredicted RBP16.61■□□□□ 0.25
LIMK1-202ENST00000418310 CCER2I3L3R5 266 aa16.61■□□□□ 0.25
LIMK1-202ENST00000418310 ZNF326Q5BKZ1 582 aaKnown RBP16.61■□□□□ 0.25
LIMK1-202ENST00000418310 PDS5BQ9NTI5 1447 aa16.61■□□□□ 0.25
LIMK1-202ENST00000418310 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.6■□□□□ 0.25
LIMK1-202ENST00000418310 CDK13Q14004 1512 aaKnown RBP16.6■□□□□ 0.25
LIMK1-202ENST00000418310 MAGI3Q5TCQ9 1506 aa16.6■□□□□ 0.25
LIMK1-202ENST00000418310 GRIN2BQ13224 1484 aa16.6■□□□□ 0.25
LIMK1-202ENST00000418310 L3MBTL2Q969R5 705 aa16.59■□□□□ 0.25
LIMK1-202ENST00000418310 ZNF777Q9ULD5 760 aaPredicted RBP16.59■□□□□ 0.25
LIMK1-202ENST00000418310 LRRIQ1Q96JM4 1722 aa16.59■□□□□ 0.25
LIMK1-202ENST00000418310 MPHOSPH9Q99550 1183 aa16.59■□□□□ 0.25
LIMK1-202ENST00000418310 CCDC184Q52MB2 194 aa16.58■□□□□ 0.25
LIMK1-202ENST00000418310 FAM9BQ8IZU0 186 aa16.58■□□□□ 0.25
LIMK1-202ENST00000418310 WASHC2AQ641Q2 1341 aa16.58■□□□□ 0.25
LIMK1-202ENST00000418310 FBLN2P98095 1184 aa16.58■□□□□ 0.24
LIMK1-202ENST00000418310 EIF4G2P78344 907 aaKnown RBP eCLIP16.56■□□□□ 0.24
LIMK1-202ENST00000418310 SUPT6HQ7KZ85 1726 aaKnown RBP16.54■□□□□ 0.24
LIMK1-202ENST00000418310 ABCA5Q8WWZ7 1642 aa16.54■□□□□ 0.24
LIMK1-202ENST00000418310 C11orf95C9JLR9 678 aaPredicted RBP16.54■□□□□ 0.24
LIMK1-202ENST00000418310 LAMC3Q9Y6N6 1575 aa16.54■□□□□ 0.24
LIMK1-202ENST00000418310 SAMD9Q5K651 1589 aa16.53■□□□□ 0.24
LIMK1-202ENST00000418310 SLC4A1APQ9BWU0 796 aaKnown RBP16.53■□□□□ 0.24
LIMK1-202ENST00000418310 EHBP1L1Q8N3D4 1523 aa16.53■□□□□ 0.24
LIMK1-202ENST00000418310 KDM6BO15054 1643 aa16.52■□□□□ 0.24
LIMK1-202ENST00000418310 KIF21AQ7Z4S6 1674 aa16.51■□□□□ 0.23
LIMK1-202ENST00000418310 UGGT2Q9NYU1 1516 aa16.5■□□□□ 0.23
LIMK1-202ENST00000418310 NBPF8Q3BBV2 869 aa16.49■□□□□ 0.23
LIMK1-202ENST00000418310 EPRSP07814 1512 aaKnown RBP16.49■□□□□ 0.23
LIMK1-202ENST00000418310 MRS2Q9HD23 443 aa16.48■□□□□ 0.23
LIMK1-202ENST00000418310 RBM19Q9Y4C8 960 aaKnown RBP16.48■□□□□ 0.23
LIMK1-202ENST00000418310 THOC2Q8NI27 1593 aaKnown RBP16.47■□□□□ 0.23
LIMK1-202ENST00000418310 DENND4BO75064 1496 aaPredicted RBP16.46■□□□□ 0.23
LIMK1-202ENST00000418310 ZNF608Q9ULD9 1512 aaPredicted RBP16.45■□□□□ 0.22
LIMK1-202ENST00000418310 KDM5BQ9UGL1 1544 aa16.44■□□□□ 0.22
LIMK1-202ENST00000418310 IQGAP2Q13576 1575 aa16.43■□□□□ 0.22
LIMK1-202ENST00000418310 ANP32EQ9BTT0 268 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms