RNA–Protein interactions for RNA: ENST00000418310.5

LIMK1-202, Transcript of LIM domain kinase 1, humanhuman

TSL 5 BASIC

Gene LIMK1, Length 3,360 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-202ENST00000418310 NISCHQ9Y2I1 1504 aa23.99■■□□□ 1.43
LIMK1-202ENST00000418310 SHROOM4Q9ULL8 1493 aa21.2■□□□□ 0.98
LIMK1-202ENST00000418310 SUPT5HO00267 1087 aaKnown RBP20.83■□□□□ 0.93
LIMK1-202ENST00000418310 DCAF8L2P0C7V8 631 aa20.67■□□□□ 0.9
LIMK1-202ENST00000418310 ZCCHC6Q5VYS8 1495 aaKnown RBP20.25■□□□□ 0.83
LIMK1-202ENST00000418310 CCDC180Q9P1Z9 1646 aa20.05■□□□□ 0.8
LIMK1-202ENST00000418310 CHIC1Q5VXU3 224 aa19.99■□□□□ 0.79
LIMK1-202ENST00000418310 MYO15BQ96JP2 1530 aa19.94■□□□□ 0.78
LIMK1-202ENST00000418310 PCGF6Q9BYE7 350 aa19.74■□□□□ 0.75
LIMK1-202ENST00000418310 LOC105371045A0A1W2PR82 267 aa19.66■□□□□ 0.74
LIMK1-202ENST00000418310 HRCP23327 699 aa19.53■□□□□ 0.72
LIMK1-202ENST00000418310 PPARGC1BQ86YN6 1023 aaKnown RBP19.46■□□□□ 0.71
LIMK1-202ENST00000418310 EHMT2Q96KQ7 1210 aa19.45■□□□□ 0.7
LIMK1-202ENST00000418310 DCAF1Q9Y4B6 1507 aa19.37■□□□□ 0.69
LIMK1-202ENST00000418310 FAM9AQ8IZU1 332 aaPredicted RBP19.36■□□□□ 0.69
LIMK1-202ENST00000418310 SCRIBQ14160 1630 aa19.31■□□□□ 0.68
LIMK1-202ENST00000418310 TRIM41Q8WV44 630 aa19.2■□□□□ 0.66
LIMK1-202ENST00000418310 ABCC9O60706 1549 aa19.14■□□□□ 0.65
LIMK1-202ENST00000418310 RSF1Q96T23 1441 aaPredicted RBP19.14■□□□□ 0.65
LIMK1-202ENST00000418310 TRIM26Q12899 539 aaPredicted RBP19.05■□□□□ 0.64
LIMK1-202ENST00000418310 RB1CC1Q8TDY2 1594 aa19■□□□□ 0.63
LIMK1-202ENST00000418310 CECR2Q9BXF3 1484 aa18.94■□□□□ 0.62
LIMK1-202ENST00000418310 TTBK1Q5TCY1 1321 aaPredicted RBP18.8■□□□□ 0.6
LIMK1-202ENST00000418310 MROH2BQ7Z745 1585 aa18.79■□□□□ 0.6
LIMK1-202ENST00000418310 WIZO95785 1651 aa18.69■□□□□ 0.58
LIMK1-202ENST00000418310 NACADO15069 1562 aa18.65■□□□□ 0.58
LIMK1-202ENST00000418310 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.56■□□□□ 0.56
LIMK1-202ENST00000418310 ZEB1P37275 1124 aaPredicted RBP18.54■□□□□ 0.56
LIMK1-202ENST00000418310 PABPN1Q86U42 306 aaKnown RBP eCLIP18.52■□□□□ 0.56
LIMK1-202ENST00000418310 CCER1Q8TC90 406 aaPredicted RBP18.45■□□□□ 0.54
LIMK1-202ENST00000418310 ABCC8Q09428 1581 aa18.45■□□□□ 0.54
LIMK1-202ENST00000418310 BAZ1AQ9NRL2 1556 aaPredicted RBP18.38■□□□□ 0.53
LIMK1-202ENST00000418310 UBTFP17480 764 aaKnown RBP18.38■□□□□ 0.53
LIMK1-202ENST00000418310 CCDC88BA6NC98 1476 aa18.37■□□□□ 0.53
LIMK1-202ENST00000418310 RANGAP1P46060 587 aaPredicted RBP18.33■□□□□ 0.52
LIMK1-202ENST00000418310 SOGA1O94964 1423 aa18.32■□□□□ 0.52
LIMK1-202ENST00000418310 RUSC2Q8N2Y8 1516 aa18.24■□□□□ 0.51
LIMK1-202ENST00000418310 TOP2AP11388 1531 aaKnown RBP18.23■□□□□ 0.51
LIMK1-202ENST00000418310 SMARCA4P51532 1647 aa18.23■□□□□ 0.51
LIMK1-202ENST00000418310 CEP162Q5TB80 1403 aa18.21■□□□□ 0.51
LIMK1-202ENST00000418310 EIF4G1Q04637 1599 aaKnown RBP18.21■□□□□ 0.5
LIMK1-202ENST00000418310 CSRNP3Q8WYN3 585 aa18.21■□□□□ 0.5
LIMK1-202ENST00000418310 SMARCA2P51531 1590 aa18.19■□□□□ 0.5
LIMK1-202ENST00000418310 SCAF1Q9H7N4 1312 aaKnown RBP18.18■□□□□ 0.5
LIMK1-202ENST00000418310 HNRNPUL2Q1KMD3 747 aaKnown RBP18.11■□□□□ 0.49
LIMK1-202ENST00000418310 UNC13AQ9UPW8 1703 aa18.1■□□□□ 0.49
LIMK1-202ENST00000418310 DIEXFQ68CQ4 756 aaKnown RBP18.05■□□□□ 0.48
LIMK1-202ENST00000418310 TNIKQ9UKE5 1360 aa18.04■□□□□ 0.48
LIMK1-202ENST00000418310 WRNQ14191 1432 aaPredicted RBP eCLIP18.02■□□□□ 0.48
LIMK1-202ENST00000418310 NEUROD1Q13562 356 aa17.98■□□□□ 0.47
LIMK1-202ENST00000418310 YTHDC1Q96MU7 727 aaKnown RBP17.95■□□□□ 0.46
LIMK1-202ENST00000418310 GOLGA3Q08378 1498 aa17.95■□□□□ 0.46
LIMK1-202ENST00000418310 BICRAQ9NZM4 1560 aa17.93■□□□□ 0.46
LIMK1-202ENST00000418310 APLP2Q06481 763 aa17.93■□□□□ 0.46
LIMK1-202ENST00000418310 ACIN1Q9UKV3 1341 aaKnown RBP17.89■□□□□ 0.45
LIMK1-202ENST00000418310 EEA1Q15075 1411 aa17.89■□□□□ 0.45
LIMK1-202ENST00000418310 SYNJ1O43426 1573 aa17.88■□□□□ 0.45
LIMK1-202ENST00000418310 CLIP1P30622 1438 aa17.86■□□□□ 0.45
LIMK1-202ENST00000418310 BAZ1BQ9UIG0 1483 aaKnown RBP17.84■□□□□ 0.45
LIMK1-202ENST00000418310 GTF3C3Q9Y5Q9 886 aa17.84■□□□□ 0.45
LIMK1-202ENST00000418310 ATAD2BQ9ULI0 1458 aa17.82■□□□□ 0.44
LIMK1-202ENST00000418310 ZNF316A6NFI3 1004 aaPredicted RBP17.8■□□□□ 0.44
LIMK1-202ENST00000418310 CEP164Q9UPV0 1460 aa17.8■□□□□ 0.44
LIMK1-202ENST00000418310 RAPGEF2Q9Y4G8 1499 aa17.8■□□□□ 0.44
LIMK1-202ENST00000418310 CENPBP07199 599 aaPredicted RBP17.79■□□□□ 0.44
LIMK1-202ENST00000418310 ITGAEP38570 1179 aa17.72■□□□□ 0.43
LIMK1-202ENST00000418310 MIER1Q8N108 512 aa17.7■□□□□ 0.42
LIMK1-202ENST00000418310 VPS8Q8N3P4 1428 aa17.69■□□□□ 0.42
LIMK1-202ENST00000418310 PEG3Q9GZU2 1588 aa17.65■□□□□ 0.42
LIMK1-202ENST00000418310 KANK4Q5T7N3 995 aaPredicted RBP17.64■□□□□ 0.41
LIMK1-202ENST00000418310 KIF21BO75037 1637 aa17.62■□□□□ 0.41
LIMK1-202ENST00000418310 PELP1Q8IZL8 1130 aaKnown RBP17.58■□□□□ 0.4
LIMK1-202ENST00000418310 ATP1B4Q9UN42 357 aaPredicted RBP17.54■□□□□ 0.4
LIMK1-202ENST00000418310 TOP2BQ02880 1626 aa17.5■□□□□ 0.39
LIMK1-202ENST00000418310 P3H3Q8IVL6 736 aa17.49■□□□□ 0.39
LIMK1-202ENST00000418310 ARAP1Q96P48 1450 aa17.46■□□□□ 0.39
LIMK1-202ENST00000418310 CUX1P39880 1505 aa17.44■□□□□ 0.38
LIMK1-202ENST00000418310 KIF27Q86VH2 1401 aa17.43■□□□□ 0.38
LIMK1-202ENST00000418310 PRXQ9BXM0 1461 aa17.42■□□□□ 0.38
LIMK1-202ENST00000418310 DHX57Q6P158 1386 aaKnown RBP17.41■□□□□ 0.38
LIMK1-202ENST00000418310 FAM50AQ14320 339 aaKnown RBP17.36■□□□□ 0.37
LIMK1-202ENST00000418310 CUX2O14529 1486 aa17.35■□□□□ 0.37
LIMK1-202ENST00000418310 BIVM-ERCC5R4GMW8 1640 aa17.35■□□□□ 0.37
LIMK1-202ENST00000418310 NCAPD3P42695 1498 aa17.34■□□□□ 0.37
LIMK1-202ENST00000418310 ERICH3Q5RHP9 1530 aa17.31■□□□□ 0.36
LIMK1-202ENST00000418310 ARHGAP35Q9NRY4 1499 aa17.31■□□□□ 0.36
LIMK1-202ENST00000418310 CCNB3Q8WWL7 1395 aa17.31■□□□□ 0.36
LIMK1-202ENST00000418310 CFTRP13569 1480 aa17.28■□□□□ 0.36
LIMK1-202ENST00000418310 HIRIP3Q9BW71 556 aaPredicted RBP17.26■□□□□ 0.35
LIMK1-202ENST00000418310 IGF1RP08069 1367 aa17.25■□□□□ 0.35
LIMK1-202ENST00000418310 HMGXB3Q12766 1538 aa17.25■□□□□ 0.35
LIMK1-202ENST00000418310 SIN3AQ96ST3 1273 aa17.25■□□□□ 0.35
LIMK1-202ENST00000418310 CARMIL1Q5VZK9 1371 aa17.24■□□□□ 0.35
LIMK1-202ENST00000418310 KCNH8Q96L42 1107 aa17.23■□□□□ 0.35
LIMK1-202ENST00000418310 RAB3GAP2Q9H2M9 1393 aa17.22■□□□□ 0.35
LIMK1-202ENST00000418310 RRBP1Q9P2E9 1410 aaKnown RBP17.21■□□□□ 0.35
LIMK1-202ENST00000418310 CLSPNQ9HAW4 1339 aa17.18■□□□□ 0.34
LIMK1-202ENST00000418310 FGD5Q6ZNL6 1462 aa17.18■□□□□ 0.34
LIMK1-202ENST00000418310 CADPSQ9ULU8 1353 aa17.17■□□□□ 0.34
LIMK1-202ENST00000418310 PHLDB1Q86UU1 1377 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms