RNA–Protein interactions for RNA: ENST00000406949.5

PCNX4-204, Transcript of pecanex 4, humanhuman

TSL 2 BASIC

Gene PCNX4, Length 3,513 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX4-204ENST00000406949 CC2D2AQ9P2K1 1620 aa17.08■□□□□ 0.33
PCNX4-204ENST00000406949 NESP48681 1621 aa17.08■□□□□ 0.32
PCNX4-204ENST00000406949 CLSPNQ9HAW4 1339 aa17.07■□□□□ 0.32
PCNX4-204ENST00000406949 HIRIP3Q9BW71 556 aaPredicted RBP17.07■□□□□ 0.32
PCNX4-204ENST00000406949 RAB3GAP2Q9H2M9 1393 aa17.07■□□□□ 0.32
PCNX4-204ENST00000406949 MTUS2Q5JR59 1369 aa17.05■□□□□ 0.32
PCNX4-204ENST00000406949 FHAD1B1AJZ9 1412 aa17.05■□□□□ 0.32
PCNX4-204ENST00000406949 DDX10Q13206 875 aaKnown RBP17.01■□□□□ 0.31
PCNX4-204ENST00000406949 TRIM52Q96A61 297 aa17.01■□□□□ 0.31
PCNX4-204ENST00000406949 CHIC2Q9UKJ5 165 aa17.01■□□□□ 0.31
PCNX4-204ENST00000406949 DNAJC5BQ9UF47 199 aa17■□□□□ 0.31
PCNX4-204ENST00000406949 RRBP1Q9P2E9 1410 aaKnown RBP16.99■□□□□ 0.31
PCNX4-204ENST00000406949 PHLDB1Q86UU1 1377 aa16.98■□□□□ 0.31
PCNX4-204ENST00000406949 SETD5Q9C0A6 1442 aa16.97■□□□□ 0.31
PCNX4-204ENST00000406949 FBLN2P98095 1184 aa16.95■□□□□ 0.3
PCNX4-204ENST00000406949 CNGB1Q14028 1251 aaPredicted RBP16.95■□□□□ 0.3
PCNX4-204ENST00000406949 POLA1P09884 1462 aaPredicted RBP16.93■□□□□ 0.3
PCNX4-204ENST00000406949 LRRC9Q6ZRR7 1453 aa16.92■□□□□ 0.3
PCNX4-204ENST00000406949 RRP7BPQ9NSQ0 103 aa16.92■□□□□ 0.3
PCNX4-204ENST00000406949 TOPBP1Q92547 1522 aa16.92■□□□□ 0.3
PCNX4-204ENST00000406949 TONSLQ96HA7 1378 aa16.9■□□□□ 0.3
PCNX4-204ENST00000406949 PDS5BQ9NTI5 1447 aa16.88■□□□□ 0.29
PCNX4-204ENST00000406949 TIAM1Q13009 1591 aa16.88■□□□□ 0.29
PCNX4-204ENST00000406949 FMN1Q68DA7 1419 aa16.85■□□□□ 0.29
PCNX4-204ENST00000406949 BCANQ96GW7 911 aa16.85■□□□□ 0.29
PCNX4-204ENST00000406949 DNMBPQ6XZF7 1577 aa16.84■□□□□ 0.29
PCNX4-204ENST00000406949 ANP32CO43423 234 aa16.83■□□□□ 0.28
PCNX4-204ENST00000406949 GAPVD1Q14C86 1478 aa16.82■□□□□ 0.28
PCNX4-204ENST00000406949 KCNH8Q96L42 1107 aa16.82■□□□□ 0.28
PCNX4-204ENST00000406949 PCF11O94913 1555 aaKnown RBP16.81■□□□□ 0.28
PCNX4-204ENST00000406949 ABCA10Q8WWZ4 1543 aa16.81■□□□□ 0.28
PCNX4-204ENST00000406949 ZNF777Q9ULD5 760 aaPredicted RBP16.79■□□□□ 0.28
PCNX4-204ENST00000406949 POLR3GLQ9BT43 218 aa16.79■□□□□ 0.28
PCNX4-204ENST00000406949 NEFLP07196 543 aa16.78■□□□□ 0.28
PCNX4-204ENST00000406949 CASKIN1Q8WXD9 1431 aa16.77■□□□□ 0.27
PCNX4-204ENST00000406949 URB2Q14146 1524 aaKnown RBP16.75■□□□□ 0.27
PCNX4-204ENST00000406949 FYCO1Q9BQS8 1478 aa16.74■□□□□ 0.27
PCNX4-204ENST00000406949 PRDM2Q13029 1718 aa16.74■□□□□ 0.27
PCNX4-204ENST00000406949 FGD6Q6ZV73 1430 aa16.73■□□□□ 0.27
PCNX4-204ENST00000406949 AQRO60306 1485 aaKnown RBP eCLIP16.73■□□□□ 0.27
PCNX4-204ENST00000406949 ZNF326Q5BKZ1 582 aaKnown RBP16.73■□□□□ 0.27
PCNX4-204ENST00000406949 PPP1R15AO75807 674 aaPredicted RBP16.72■□□□□ 0.27
PCNX4-204ENST00000406949 CHMP7Q8WUX9 453 aaPredicted RBP16.71■□□□□ 0.27
PCNX4-204ENST00000406949 FOXD1Q16676 465 aa16.71■□□□□ 0.27
PCNX4-204ENST00000406949 CDK11AQ9UQ88 783 aaPredicted RBP16.69■□□□□ 0.26
PCNX4-204ENST00000406949 EFCAB5A4FU69 1503 aa16.69■□□□□ 0.26
PCNX4-204ENST00000406949 MAP3K1Q13233 1512 aa16.68■□□□□ 0.26
PCNX4-204ENST00000406949 CCDC18Q5T9S5 1454 aa16.67■□□□□ 0.26
PCNX4-204ENST00000406949 FKBP8Q14318 412 aa16.66■□□□□ 0.26
PCNX4-204ENST00000406949 SUPT16HQ9Y5B9 1047 aaKnown RBP16.65■□□□□ 0.26
PCNX4-204ENST00000406949 NCOA2Q15596 1464 aa16.65■□□□□ 0.26
PCNX4-204ENST00000406949 TIMELESSQ9UNS1 1208 aa16.65■□□□□ 0.26
PCNX4-204ENST00000406949 LAMC3Q9Y6N6 1575 aa16.65■□□□□ 0.26
PCNX4-204ENST00000406949 MAPKBP1O60336 1514 aa16.64■□□□□ 0.26
PCNX4-204ENST00000406949 WDR97A6NE52 1622 aa16.64■□□□□ 0.25
PCNX4-204ENST00000406949 CUL7Q14999 1698 aa16.64■□□□□ 0.25
PCNX4-204ENST00000406949 MYOM3Q5VTT5 1437 aa16.63■□□□□ 0.25
PCNX4-204ENST00000406949 SLC4A1APQ9BWU0 796 aaKnown RBP16.62■□□□□ 0.25
PCNX4-204ENST00000406949 ERCC6Q03468 1493 aa16.61■□□□□ 0.25
PCNX4-204ENST00000406949 PRKCSHP14314 528 aaPredicted RBP16.59■□□□□ 0.25
PCNX4-204ENST00000406949 HNRNPUQ00839 825 aaKnown RBP eCLIP16.58■□□□□ 0.25
PCNX4-204ENST00000406949 CFDP1Q9UEE9 299 aaPredicted RBP16.58■□□□□ 0.24
PCNX4-204ENST00000406949 EIF4G2P78344 907 aaKnown RBP eCLIP16.57■□□□□ 0.24
PCNX4-204ENST00000406949 SENP3-EIF4A1A0A087X0R7 540 aa16.56■□□□□ 0.24
PCNX4-204ENST00000406949 MPHOSPH9Q99550 1183 aa16.56■□□□□ 0.24
PCNX4-204ENST00000406949 ZNF644Q9H582 1327 aaPredicted RBP16.56■□□□□ 0.24
PCNX4-204ENST00000406949 PTPRKQ15262 1439 aa16.55■□□□□ 0.24
PCNX4-204ENST00000406949 UACAQ9BZF9 1416 aa16.55■□□□□ 0.24
PCNX4-204ENST00000406949 CFAP43Q8NDM7 1665 aa16.54■□□□□ 0.24
PCNX4-204ENST00000406949 HSPA5P11021 654 aaKnown RBP16.54■□□□□ 0.24
PCNX4-204ENST00000406949 CTTNBP2Q8WZ74 1663 aa16.53■□□□□ 0.24
PCNX4-204ENST00000406949 HFM1A2PYH4 1435 aa16.52■□□□□ 0.24
PCNX4-204ENST00000406949 SNAPC4Q5SXM2 1469 aa16.52■□□□□ 0.24
PCNX4-204ENST00000406949 CDK13Q14004 1512 aaKnown RBP16.51■□□□□ 0.23
PCNX4-204ENST00000406949 FAM9BQ8IZU0 186 aa16.51■□□□□ 0.23
PCNX4-204ENST00000406949 NAIPQ13075 1403 aa16.51■□□□□ 0.23
PCNX4-204ENST00000406949 L3MBTL2Q969R5 705 aa16.51■□□□□ 0.23
PCNX4-204ENST00000406949 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.5■□□□□ 0.23
PCNX4-204ENST00000406949 GRIN2BQ13224 1484 aa16.5■□□□□ 0.23
PCNX4-204ENST00000406949 IRX6P78412 446 aaPredicted RBP16.49■□□□□ 0.23
PCNX4-204ENST00000406949 BCL11AQ9H165 835 aa16.49■□□□□ 0.23
PCNX4-204ENST00000406949 EHBP1L1Q8N3D4 1523 aa16.48■□□□□ 0.23
PCNX4-204ENST00000406949 MRC2Q9UBG0 1479 aa16.48■□□□□ 0.23
PCNX4-204ENST00000406949 KIF21AQ7Z4S6 1674 aa16.48■□□□□ 0.23
PCNX4-204ENST00000406949 PLEKHD1A6NEE1 506 aa16.48■□□□□ 0.23
PCNX4-204ENST00000406949 ZNF608Q9ULD9 1512 aaPredicted RBP16.47■□□□□ 0.23
PCNX4-204ENST00000406949 SUPT6HQ7KZ85 1726 aaKnown RBP16.46■□□□□ 0.23
PCNX4-204ENST00000406949 KDM2AQ9Y2K7 1162 aa16.45■□□□□ 0.22
PCNX4-204ENST00000406949 EPRSP07814 1512 aaKnown RBP16.45■□□□□ 0.22
PCNX4-204ENST00000406949 CCER2I3L3R5 266 aa16.45■□□□□ 0.22
PCNX4-204ENST00000406949 IQGAP2Q13576 1575 aa16.44■□□□□ 0.22
PCNX4-204ENST00000406949 ABCA5Q8WWZ7 1642 aa16.43■□□□□ 0.22
PCNX4-204ENST00000406949 MRS2Q9HD23 443 aa16.43■□□□□ 0.22
PCNX4-204ENST00000406949 TSPY4P0CV99 314 aa16.43■□□□□ 0.22
PCNX4-204ENST00000406949 TSPY10P0CW01 314 aa16.43■□□□□ 0.22
PCNX4-204ENST00000406949 JPH4Q96JJ6 628 aa16.43■□□□□ 0.22
PCNX4-204ENST00000406949 PTPN23Q9H3S7 1636 aa16.42■□□□□ 0.22
PCNX4-204ENST00000406949 HECW1Q76N89 1606 aa16.4■□□□□ 0.22
PCNX4-204ENST00000406949 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.22
PCNX4-204ENST00000406949 PKD2Q13563 968 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms