RNA–Protein interactions for RNA: ENST00000395906.7

CDRT1-204, CMT1A duplicated region transcript 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDRT1, Length 2,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-204ENST00000395906 UBTFP17480 764 aaKnown RBP13.61□□□□□ -0.23
CDRT1-204ENST00000395906 ITGAEP38570 1179 aa13.61□□□□□ -0.23
CDRT1-204ENST00000395906 LAMC3Q9Y6N6 1575 aa13.6□□□□□ -0.23
CDRT1-204ENST00000395906 PDS5BQ9NTI5 1447 aa13.6□□□□□ -0.23
CDRT1-204ENST00000395906 CEP164Q9UPV0 1460 aa13.59□□□□□ -0.23
CDRT1-204ENST00000395906 CDK11AQ9UQ88 783 aaPredicted RBP13.59□□□□□ -0.23
CDRT1-204ENST00000395906 RAD54L2Q9Y4B4 1467 aa13.58□□□□□ -0.24
CDRT1-204ENST00000395906 PRDM2Q13029 1718 aa13.57□□□□□ -0.24
CDRT1-204ENST00000395906 KIF21AQ7Z4S6 1674 aa13.57□□□□□ -0.24
CDRT1-204ENST00000395906 FGD5Q6ZNL6 1462 aa13.57□□□□□ -0.24
CDRT1-204ENST00000395906 NBR1Q14596 966 aa13.56□□□□□ -0.24
CDRT1-204ENST00000395906 URB2Q14146 1524 aaKnown RBP13.55□□□□□ -0.24
CDRT1-204ENST00000395906 BIVM-ERCC5R4GMW8 1640 aa13.54□□□□□ -0.24
CDRT1-204ENST00000395906 NOP58Q9Y2X3 529 aaKnown RBP13.54□□□□□ -0.24
CDRT1-204ENST00000395906 TOPBP1Q92547 1522 aa13.54□□□□□ -0.24
CDRT1-204ENST00000395906 GLIPR1L2Q4G1C9 344 aa13.53□□□□□ -0.24
CDRT1-204ENST00000395906 RTL5Q5HYW3 569 aaPredicted RBP13.53□□□□□ -0.24
CDRT1-204ENST00000395906 CUX2O14529 1486 aa13.52□□□□□ -0.25
CDRT1-204ENST00000395906 ERCC6Q03468 1493 aa13.52□□□□□ -0.25
CDRT1-204ENST00000395906 POLA1P09884 1462 aaPredicted RBP13.5□□□□□ -0.25
CDRT1-204ENST00000395906 TDRD9Q8NDG6 1382 aaKnown RBP13.5□□□□□ -0.25
CDRT1-204ENST00000395906 C11orf95C9JLR9 678 aaPredicted RBP13.47□□□□□ -0.25
CDRT1-204ENST00000395906 DNMBPQ6XZF7 1577 aa13.47□□□□□ -0.25
CDRT1-204ENST00000395906 RAPGEF2Q9Y4G8 1499 aa13.47□□□□□ -0.25
CDRT1-204ENST00000395906 KIF27Q86VH2 1401 aa13.46□□□□□ -0.25
CDRT1-204ENST00000395906 EEA1Q15075 1411 aa13.44□□□□□ -0.26
CDRT1-204ENST00000395906 ZMYND15Q9H091 742 aa13.44□□□□□ -0.26
CDRT1-204ENST00000395906 RSPH6AQ9H0K4 717 aa13.43□□□□□ -0.26
CDRT1-204ENST00000395906 IGF1RP08069 1367 aa13.43□□□□□ -0.26
CDRT1-204ENST00000395906 PAK3O75914 559 aaPredicted RBP13.41□□□□□ -0.26
CDRT1-204ENST00000395906 KCNH8Q96L42 1107 aa13.4□□□□□ -0.26
CDRT1-204ENST00000395906 MRC2Q9UBG0 1479 aa13.4□□□□□ -0.26
CDRT1-204ENST00000395906 AQRO60306 1485 aaKnown RBP eCLIP13.39□□□□□ -0.27
CDRT1-204ENST00000395906 GOLGA3Q08378 1498 aa13.38□□□□□ -0.27
CDRT1-204ENST00000395906 WASHC2AQ641Q2 1341 aa13.38□□□□□ -0.27
CDRT1-204ENST00000395906 CEP162Q5TB80 1403 aa13.37□□□□□ -0.27
CDRT1-204ENST00000395906 WASHC2CQ9Y4E1 1318 aa13.36□□□□□ -0.27
CDRT1-204ENST00000395906 VSIG10Q8N0Z9 540 aa13.36□□□□□ -0.27
CDRT1-204ENST00000395906 CARMIL1Q5VZK9 1371 aa13.36□□□□□ -0.27
CDRT1-204ENST00000395906 TNIKQ9UKE5 1360 aa13.35□□□□□ -0.27
CDRT1-204ENST00000395906 ZNF608Q9ULD9 1512 aaPredicted RBP13.35□□□□□ -0.27
CDRT1-204ENST00000395906 ABCA10Q8WWZ4 1543 aa13.34□□□□□ -0.27
CDRT1-204ENST00000395906 TIMELESSQ9UNS1 1208 aa13.34□□□□□ -0.27
CDRT1-204ENST00000395906 PRXQ9BXM0 1461 aa13.34□□□□□ -0.27
CDRT1-204ENST00000395906 P3H3Q8IVL6 736 aa13.31□□□□□ -0.28
CDRT1-204ENST00000395906 GAPVD1Q14C86 1478 aa13.31□□□□□ -0.28
CDRT1-204ENST00000395906 FBLN2P98095 1184 aa13.3□□□□□ -0.28
CDRT1-204ENST00000395906 USP35Q9P2H5 1018 aa13.29□□□□□ -0.28
CDRT1-204ENST00000395906 KIF21BO75037 1637 aa13.29□□□□□ -0.28
CDRT1-204ENST00000395906 IPO9Q96P70 1041 aaKnown RBP13.28□□□□□ -0.28
CDRT1-204ENST00000395906 WDR62O43379 1518 aa13.28□□□□□ -0.28
CDRT1-204ENST00000395906 TARBP1Q13395 1621 aaKnown RBP13.28□□□□□ -0.28
CDRT1-204ENST00000395906 THOC2Q8NI27 1593 aaKnown RBP13.27□□□□□ -0.29
CDRT1-204ENST00000395906 ZBTB47Q9UFB7 747 aaPredicted RBP13.27□□□□□ -0.29
CDRT1-204ENST00000395906 CLIP1P30622 1438 aa13.26□□□□□ -0.29
CDRT1-204ENST00000395906 BRPF3Q9ULD4 1205 aa13.26□□□□□ -0.29
CDRT1-204ENST00000395906 ANP32AP39687 249 aaKnown RBP13.25□□□□□ -0.29
CDRT1-204ENST00000395906 PPP4R2Q9NY27 417 aa13.25□□□□□ -0.29
CDRT1-204ENST00000395906 FGD1P98174 961 aa13.23□□□□□ -0.29
CDRT1-204ENST00000395906 PDE4CQ08493 712 aa13.23□□□□□ -0.29
CDRT1-204ENST00000395906 HNRNPUL2Q1KMD3 747 aaKnown RBP13.23□□□□□ -0.29
CDRT1-204ENST00000395906 WDR97A6NE52 1622 aa13.22□□□□□ -0.29
CDRT1-204ENST00000395906 TRIM52Q96A61 297 aa13.21□□□□□ -0.29
CDRT1-204ENST00000395906 IFT140Q96RY7 1462 aa13.21□□□□□ -0.3
CDRT1-204ENST00000395906 ERICH3Q5RHP9 1530 aa13.2□□□□□ -0.3
CDRT1-204ENST00000395906 ABCA5Q8WWZ7 1642 aa13.2□□□□□ -0.3
CDRT1-204ENST00000395906 FAM43AQ8N2R8 423 aa13.2□□□□□ -0.3
CDRT1-204ENST00000395906 NEFMP07197 916 aa13.2□□□□□ -0.3
CDRT1-204ENST00000395906 CCER2I3L3R5 266 aa13.19□□□□□ -0.3
CDRT1-204ENST00000395906 AAMPQ13685 434 aa13.19□□□□□ -0.3
CDRT1-204ENST00000395906 ATP1B4Q9UN42 357 aaPredicted RBP13.19□□□□□ -0.3
CDRT1-204ENST00000395906 RBM10P98175 930 aaKnown RBP13.18□□□□□ -0.3
CDRT1-204ENST00000395906 A0A0U1RQG5 324 aaPredicted RBP13.18□□□□□ -0.3
CDRT1-204ENST00000395906 CHMP7Q8WUX9 453 aaPredicted RBP13.17□□□□□ -0.3
CDRT1-204ENST00000395906 IRX6P78412 446 aaPredicted RBP13.15□□□□□ -0.3
CDRT1-204ENST00000395906 GRIN2BQ13224 1484 aa13.14□□□□□ -0.31
CDRT1-204ENST00000395906 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
CDRT1-204ENST00000395906 EIF4G3O43432 1585 aaKnown RBP13.14□□□□□ -0.31
CDRT1-204ENST00000395906 ARAP1Q96P48 1450 aa13.14□□□□□ -0.31
CDRT1-204ENST00000395906 PDIA4P13667 645 aaKnown RBP13.13□□□□□ -0.31
CDRT1-204ENST00000395906 RRP9O43818 475 aaKnown RBP13.13□□□□□ -0.31
CDRT1-204ENST00000395906 GSE1Q14687 1217 aa13.13□□□□□ -0.31
CDRT1-204ENST00000395906 PBRM1Q86U86 1689 aa13.12□□□□□ -0.31
CDRT1-204ENST00000395906 DHX57Q6P158 1386 aaKnown RBP13.12□□□□□ -0.31
CDRT1-204ENST00000395906 ARHGAP35Q9NRY4 1499 aa13.11□□□□□ -0.31
CDRT1-204ENST00000395906 PPM1GO15355 546 aaPredicted RBP13.11□□□□□ -0.31
CDRT1-204ENST00000395906 HSP90AA2PQ14568 343 aaPredicted RBP13.11□□□□□ -0.31
CDRT1-204ENST00000395906 ARID3CA6NKF2 412 aa13.1□□□□□ -0.31
CDRT1-204ENST00000395906 FHAD1B1AJZ9 1412 aa13.1□□□□□ -0.31
CDRT1-204ENST00000395906 CUL7Q14999 1698 aa13.09□□□□□ -0.31
CDRT1-204ENST00000395906 FHOD3Q2V2M9 1422 aa13.09□□□□□ -0.31
CDRT1-204ENST00000395906 VPS8Q8N3P4 1428 aa13.07□□□□□ -0.32
CDRT1-204ENST00000395906 KANK4Q5T7N3 995 aaPredicted RBP13.07□□□□□ -0.32
CDRT1-204ENST00000395906 B4GALNT3Q6L9W6 998 aa13.06□□□□□ -0.32
CDRT1-204ENST00000395906 DDX10Q13206 875 aaKnown RBP13.05□□□□□ -0.32
CDRT1-204ENST00000395906 ADAMTS12P58397 1594 aa13.05□□□□□ -0.32
CDRT1-204ENST00000395906 LAS1LQ9Y4W2 734 aaKnown RBP13.04□□□□□ -0.32
CDRT1-204ENST00000395906 ANP32CO43423 234 aa13.04□□□□□ -0.32
CDRT1-204ENST00000395906 PPP1R15AO75807 674 aaPredicted RBP13.02□□□□□ -0.32
CDRT1-204ENST00000395906 BCL11BQ9C0K0 894 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms