RNA–Protein interactions for RNA: ENST00000395906.7

CDRT1-204, CMT1A duplicated region transcript 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDRT1, Length 2,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-204ENST00000395906 NISCHQ9Y2I1 1504 aa18.87■□□□□ 0.61
CDRT1-204ENST00000395906 PELP1Q8IZL8 1130 aaKnown RBP17.18■□□□□ 0.34
CDRT1-204ENST00000395906 MYT1Q01538 1121 aa16.82■□□□□ 0.28
CDRT1-204ENST00000395906 HRCP23327 699 aa16.46■□□□□ 0.23
CDRT1-204ENST00000395906 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
CDRT1-204ENST00000395906 DCAF8L2P0C7V8 631 aa16.12■□□□□ 0.17
CDRT1-204ENST00000395906 TTBK1Q5TCY1 1321 aaPredicted RBP16.05■□□□□ 0.16
CDRT1-204ENST00000395906 SCAF1Q9H7N4 1312 aaKnown RBP15.94■□□□□ 0.14
CDRT1-204ENST00000395906 PPARGC1BQ86YN6 1023 aaKnown RBP15.92■□□□□ 0.14
CDRT1-204ENST00000395906 ABCC9O60706 1549 aa15.84■□□□□ 0.13
CDRT1-204ENST00000395906 SHROOM4Q9ULL8 1493 aa15.82■□□□□ 0.12
CDRT1-204ENST00000395906 ZCCHC6Q5VYS8 1495 aaKnown RBP15.8■□□□□ 0.12
CDRT1-204ENST00000395906 PCGF6Q9BYE7 350 aa15.63■□□□□ 0.09
CDRT1-204ENST00000395906 PRKCSHP14314 528 aaPredicted RBP15.42■□□□□ 0.06
CDRT1-204ENST00000395906 BCL11AQ9H165 835 aa15.42■□□□□ 0.06
CDRT1-204ENST00000395906 DCAF1Q9Y4B6 1507 aa15.38■□□□□ 0.05
CDRT1-204ENST00000395906 ACIN1Q9UKV3 1341 aaKnown RBP15.37■□□□□ 0.05
CDRT1-204ENST00000395906 MYO15BQ96JP2 1530 aa15.28■□□□□ 0.04
CDRT1-204ENST00000395906 CENPBP07199 599 aaPredicted RBP15.28■□□□□ 0.04
CDRT1-204ENST00000395906 SCRIBQ14160 1630 aa15.27■□□□□ 0.04
CDRT1-204ENST00000395906 ZEB1P37275 1124 aaPredicted RBP15.27■□□□□ 0.03
CDRT1-204ENST00000395906 FAM9AQ8IZU1 332 aaPredicted RBP15.24■□□□□ 0.03
CDRT1-204ENST00000395906 GTF3C3Q9Y5Q9 886 aa15.23■□□□□ 0.03
CDRT1-204ENST00000395906 NEUROD1Q13562 356 aa15.22■□□□□ 0.03
CDRT1-204ENST00000395906 NACADO15069 1562 aa15.22■□□□□ 0.03
CDRT1-204ENST00000395906 SUPT5HO00267 1087 aaKnown RBP15.21■□□□□ 0.03
CDRT1-204ENST00000395906 ERICH6Q7L0X2 663 aa15.2■□□□□ 0.02
CDRT1-204ENST00000395906 RB1CC1Q8TDY2 1594 aa15.14■□□□□ 0.01
CDRT1-204ENST00000395906 PABPN1Q86U42 306 aaKnown RBP eCLIP15.09■□□□□ 0.01
CDRT1-204ENST00000395906 APLP2Q06481 763 aa15.06■□□□□ 0
CDRT1-204ENST00000395906 TRIM26Q12899 539 aaPredicted RBP15.04■□□□□ -0
CDRT1-204ENST00000395906 ANP32EQ9BTT0 268 aa14.95□□□□□ -0.02
CDRT1-204ENST00000395906 UNC13AQ9UPW8 1703 aa14.91□□□□□ -0.02
CDRT1-204ENST00000395906 CECR2Q9BXF3 1484 aa14.85□□□□□ -0.03
CDRT1-204ENST00000395906 CHIC1Q5VXU3 224 aa14.84□□□□□ -0.03
CDRT1-204ENST00000395906 BICRAQ9NZM4 1560 aa14.77□□□□□ -0.04
CDRT1-204ENST00000395906 CSRNP3Q8WYN3 585 aa14.74□□□□□ -0.05
CDRT1-204ENST00000395906 RSF1Q96T23 1441 aaPredicted RBP14.72□□□□□ -0.05
CDRT1-204ENST00000395906 MROH2BQ7Z745 1585 aa14.69□□□□□ -0.06
CDRT1-204ENST00000395906 DNAJC5BQ9UF47 199 aa14.67□□□□□ -0.06
CDRT1-204ENST00000395906 DIEXFQ68CQ4 756 aaKnown RBP14.66□□□□□ -0.06
CDRT1-204ENST00000395906 WIZO95785 1651 aa14.57□□□□□ -0.08
CDRT1-204ENST00000395906 BAZ1AQ9NRL2 1556 aaPredicted RBP14.52□□□□□ -0.09
CDRT1-204ENST00000395906 LOC105371045A0A1W2PR82 267 aa14.49□□□□□ -0.09
CDRT1-204ENST00000395906 TSHZ2Q9NRE2 1034 aa14.49□□□□□ -0.09
CDRT1-204ENST00000395906 SMARCA4P51532 1647 aa14.49□□□□□ -0.09
CDRT1-204ENST00000395906 CLSPNQ9HAW4 1339 aa14.46□□□□□ -0.09
CDRT1-204ENST00000395906 YTHDC1Q96MU7 727 aaKnown RBP14.4□□□□□ -0.1
CDRT1-204ENST00000395906 TRIM41Q8WV44 630 aa14.37□□□□□ -0.11
CDRT1-204ENST00000395906 SLC24A1O60721 1099 aa14.36□□□□□ -0.11
CDRT1-204ENST00000395906 EIF4G1Q04637 1599 aaKnown RBP14.35□□□□□ -0.11
CDRT1-204ENST00000395906 SUPT16HQ9Y5B9 1047 aaKnown RBP14.33□□□□□ -0.11
CDRT1-204ENST00000395906 ATAD2BQ9ULI0 1458 aa14.32□□□□□ -0.12
CDRT1-204ENST00000395906 ANO8Q9HCE9 1232 aaPredicted RBP14.32□□□□□ -0.12
CDRT1-204ENST00000395906 UBE2Q2Q8WVN8 375 aa14.27□□□□□ -0.13
CDRT1-204ENST00000395906 CCER1Q8TC90 406 aaPredicted RBP14.26□□□□□ -0.13
CDRT1-204ENST00000395906 CCDC88BA6NC98 1476 aa14.26□□□□□ -0.13
CDRT1-204ENST00000395906 TOP2AP11388 1531 aaKnown RBP14.25□□□□□ -0.13
CDRT1-204ENST00000395906 BAZ1BQ9UIG0 1483 aaKnown RBP14.25□□□□□ -0.13
CDRT1-204ENST00000395906 ZNF316A6NFI3 1004 aaPredicted RBP14.22□□□□□ -0.13
CDRT1-204ENST00000395906 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.2□□□□□ -0.14
CDRT1-204ENST00000395906 SMARCA2P51531 1590 aa14.19□□□□□ -0.14
CDRT1-204ENST00000395906 MYT1LQ9UL68 1186 aa14.19□□□□□ -0.14
CDRT1-204ENST00000395906 PEG3Q9GZU2 1588 aa14.18□□□□□ -0.14
CDRT1-204ENST00000395906 CC2D2AQ9P2K1 1620 aa14.18□□□□□ -0.14
CDRT1-204ENST00000395906 MIER1Q8N108 512 aa14.17□□□□□ -0.14
CDRT1-204ENST00000395906 EIF5BO60841 1220 aaKnown RBP14.17□□□□□ -0.14
CDRT1-204ENST00000395906 NCAPD3P42695 1498 aa14.13□□□□□ -0.15
CDRT1-204ENST00000395906 ERICH6BQ5W0A0 696 aa14.12□□□□□ -0.15
CDRT1-204ENST00000395906 EHMT2Q96KQ7 1210 aa14.11□□□□□ -0.15
CDRT1-204ENST00000395906 SALL2Q9Y467 1007 aaPredicted RBP14.08□□□□□ -0.16
CDRT1-204ENST00000395906 DNAJC5Q9H3Z4 198 aa14.07□□□□□ -0.16
CDRT1-204ENST00000395906 DAXXQ9UER7 740 aaPredicted RBP14.07□□□□□ -0.16
CDRT1-204ENST00000395906 RBM19Q9Y4C8 960 aaKnown RBP14.07□□□□□ -0.16
CDRT1-204ENST00000395906 ABCC8Q09428 1581 aa14.05□□□□□ -0.16
CDRT1-204ENST00000395906 DEKP35659 375 aaKnown RBP14.02□□□□□ -0.17
CDRT1-204ENST00000395906 HMGXB3Q12766 1538 aa14.02□□□□□ -0.17
CDRT1-204ENST00000395906 MSH5O43196 834 aa14□□□□□ -0.17
CDRT1-204ENST00000395906 CCDC136Q96JN2 1154 aa13.96□□□□□ -0.17
CDRT1-204ENST00000395906 FANCIQ9NVI1 1328 aa13.91□□□□□ -0.18
CDRT1-204ENST00000395906 NESP48681 1621 aa13.9□□□□□ -0.18
CDRT1-204ENST00000395906 PKNOX2Q96KN3 472 aa13.9□□□□□ -0.18
CDRT1-204ENST00000395906 CADPSQ9ULU8 1353 aa13.86□□□□□ -0.19
CDRT1-204ENST00000395906 WRNQ14191 1432 aaPredicted RBP eCLIP13.84□□□□□ -0.19
CDRT1-204ENST00000395906 CFTRP13569 1480 aa13.84□□□□□ -0.19
CDRT1-204ENST00000395906 BCANQ96GW7 911 aa13.81□□□□□ -0.2
CDRT1-204ENST00000395906 SOGA1O94964 1423 aa13.8□□□□□ -0.2
CDRT1-204ENST00000395906 SYNJ1O43426 1573 aa13.79□□□□□ -0.2
CDRT1-204ENST00000395906 RUSC2Q8N2Y8 1516 aa13.78□□□□□ -0.2
CDRT1-204ENST00000395906 PLEKHG5O94827 1062 aa13.78□□□□□ -0.2
CDRT1-204ENST00000395906 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.78□□□□□ -0.2
CDRT1-204ENST00000395906 FKBP8Q14318 412 aa13.76□□□□□ -0.21
CDRT1-204ENST00000395906 PODXL2Q9NZ53 605 aa13.75□□□□□ -0.21
CDRT1-204ENST00000395906 FANCD2Q9BXW9 1451 aa13.72□□□□□ -0.21
CDRT1-204ENST00000395906 CUX1P39880 1505 aa13.7□□□□□ -0.22
CDRT1-204ENST00000395906 IL27Q8NEV9 243 aa13.68□□□□□ -0.22
CDRT1-204ENST00000395906 NEFLP07196 543 aa13.67□□□□□ -0.22
CDRT1-204ENST00000395906 RANGAP1P46060 587 aaPredicted RBP13.65□□□□□ -0.22
CDRT1-204ENST00000395906 TOP2BQ02880 1626 aa13.62□□□□□ -0.23
CDRT1-204ENST00000395906 RTN4Q9NQC3 1192 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms