RNA–Protein interactions for RNA: ENST00000393104.6

PDCD4-202, Transcript of programmed cell death 4, humanhuman

TSL 1 (best) BASIC

Gene PDCD4, Length 3,697 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD4-202ENST00000393104 DHX57Q6P158 1386 aaKnown RBP17.02■□□□□ 0.31
PDCD4-202ENST00000393104 CUX2O14529 1486 aa16.96■□□□□ 0.31
PDCD4-202ENST00000393104 ARAP1Q96P48 1450 aa16.96■□□□□ 0.3
PDCD4-202ENST00000393104 PBRM1Q86U86 1689 aa16.95■□□□□ 0.3
PDCD4-202ENST00000393104 SUPT16HQ9Y5B9 1047 aaKnown RBP16.95■□□□□ 0.3
PDCD4-202ENST00000393104 IFT140Q96RY7 1462 aa16.93■□□□□ 0.3
PDCD4-202ENST00000393104 RAD54L2Q9Y4B4 1467 aa16.91■□□□□ 0.3
PDCD4-202ENST00000393104 IGF1RP08069 1367 aa16.89■□□□□ 0.29
PDCD4-202ENST00000393104 RRBP1Q9P2E9 1410 aaKnown RBP16.86■□□□□ 0.29
PDCD4-202ENST00000393104 KANK4Q5T7N3 995 aaPredicted RBP16.86■□□□□ 0.29
PDCD4-202ENST00000393104 CTTNBP2Q8WZ74 1663 aa16.86■□□□□ 0.29
PDCD4-202ENST00000393104 TSHZ2Q9NRE2 1034 aa16.85■□□□□ 0.29
PDCD4-202ENST00000393104 CLSPNQ9HAW4 1339 aa16.84■□□□□ 0.29
PDCD4-202ENST00000393104 ERCC6Q03468 1493 aa16.84■□□□□ 0.29
PDCD4-202ENST00000393104 MAPKBP1O60336 1514 aa16.83■□□□□ 0.29
PDCD4-202ENST00000393104 KCNH8Q96L42 1107 aa16.83■□□□□ 0.28
PDCD4-202ENST00000393104 GAPVD1Q14C86 1478 aa16.83■□□□□ 0.28
PDCD4-202ENST00000393104 ADAMTS12P58397 1594 aa16.82■□□□□ 0.28
PDCD4-202ENST00000393104 EIF4G3O43432 1585 aaKnown RBP16.79■□□□□ 0.28
PDCD4-202ENST00000393104 CARMIL1Q5VZK9 1371 aa16.77■□□□□ 0.27
PDCD4-202ENST00000393104 GRIN2BQ13224 1484 aa16.76■□□□□ 0.27
PDCD4-202ENST00000393104 EFCAB5A4FU69 1503 aa16.72■□□□□ 0.27
PDCD4-202ENST00000393104 FHAD1B1AJZ9 1412 aa16.71■□□□□ 0.27
PDCD4-202ENST00000393104 MAGI1Q96QZ7 1491 aaPredicted RBP16.7■□□□□ 0.26
PDCD4-202ENST00000393104 ARHGAP35Q9NRY4 1499 aa16.69■□□□□ 0.26
PDCD4-202ENST00000393104 SAMD9Q5K651 1589 aa16.67■□□□□ 0.26
PDCD4-202ENST00000393104 ZNF608Q9ULD9 1512 aaPredicted RBP16.65■□□□□ 0.26
PDCD4-202ENST00000393104 TDRD9Q8NDG6 1382 aaKnown RBP16.63■□□□□ 0.25
PDCD4-202ENST00000393104 RANGAP1P46060 587 aaPredicted RBP16.61■□□□□ 0.25
PDCD4-202ENST00000393104 CCNB3Q8WWL7 1395 aa16.6■□□□□ 0.25
PDCD4-202ENST00000393104 AQRO60306 1485 aaKnown RBP eCLIP16.6■□□□□ 0.254e-6■■■■■ 31
PDCD4-202ENST00000393104 ANP32EQ9BTT0 268 aa16.59■□□□□ 0.25
PDCD4-202ENST00000393104 MAP3K1Q13233 1512 aa16.59■□□□□ 0.25
PDCD4-202ENST00000393104 RAB3GAP2Q9H2M9 1393 aa16.58■□□□□ 0.24
PDCD4-202ENST00000393104 SNAPC4Q5SXM2 1469 aa16.57■□□□□ 0.24
PDCD4-202ENST00000393104 SYNJ2O15056 1496 aa16.57■□□□□ 0.24
PDCD4-202ENST00000393104 UGGT2Q9NYU1 1516 aa16.56■□□□□ 0.24
PDCD4-202ENST00000393104 IQGAP2Q13576 1575 aa16.55■□□□□ 0.24
PDCD4-202ENST00000393104 TIAM1Q13009 1591 aa16.55■□□□□ 0.24
PDCD4-202ENST00000393104 PPP1R15AO75807 674 aaPredicted RBP16.55■□□□□ 0.24
PDCD4-202ENST00000393104 GRIN2AQ12879 1464 aa16.55■□□□□ 0.24
PDCD4-202ENST00000393104 CFAP43Q8NDM7 1665 aa16.53■□□□□ 0.24
PDCD4-202ENST00000393104 NUP160Q12769 1436 aa16.5■□□□□ 0.23
PDCD4-202ENST00000393104 APLP2Q06481 763 aa16.5■□□□□ 0.23
PDCD4-202ENST00000393104 KIAA0586Q9BVV6 1533 aa16.5■□□□□ 0.23
PDCD4-202ENST00000393104 PHLDB1Q86UU1 1377 aa16.49■□□□□ 0.23
PDCD4-202ENST00000393104 CEP170Q5SW79 1584 aa16.48■□□□□ 0.23
PDCD4-202ENST00000393104 KDM5BQ9UGL1 1544 aa16.47■□□□□ 0.23
PDCD4-202ENST00000393104 FYCO1Q9BQS8 1478 aa16.45■□□□□ 0.22
PDCD4-202ENST00000393104 LRRC9Q6ZRR7 1453 aa16.45■□□□□ 0.22
PDCD4-202ENST00000393104 CHD1O14646 1710 aa16.44■□□□□ 0.22
PDCD4-202ENST00000393104 SIN3AQ96ST3 1273 aa16.43■□□□□ 0.22
PDCD4-202ENST00000393104 SHROOM2Q13796 1616 aa16.43■□□□□ 0.22
PDCD4-202ENST00000393104 KIAA0556O60303 1618 aa16.43■□□□□ 0.22
PDCD4-202ENST00000393104 PCF11O94913 1555 aaKnown RBP16.42■□□□□ 0.22
PDCD4-202ENST00000393104 MSH5O43196 834 aa16.42■□□□□ 0.22
PDCD4-202ENST00000393104 SETD5Q9C0A6 1442 aa16.42■□□□□ 0.22
PDCD4-202ENST00000393104 CASKIN1Q8WXD9 1431 aa16.4■□□□□ 0.22
PDCD4-202ENST00000393104 BCL11AQ9H165 835 aa16.4■□□□□ 0.22
PDCD4-202ENST00000393104 FMN1Q68DA7 1419 aa16.39■□□□□ 0.21
PDCD4-202ENST00000393104 BCANQ96GW7 911 aa16.39■□□□□ 0.21
PDCD4-202ENST00000393104 RBM19Q9Y4C8 960 aaKnown RBP16.38■□□□□ 0.21
PDCD4-202ENST00000393104 FKBP8Q14318 412 aa16.38■□□□□ 0.21
PDCD4-202ENST00000393104 DDX10Q13206 875 aaKnown RBP16.37■□□□□ 0.21
PDCD4-202ENST00000393104 LRRIQ1Q96JM4 1722 aa16.37■□□□□ 0.21
PDCD4-202ENST00000393104 DISP1Q96F81 1524 aa16.36■□□□□ 0.21
PDCD4-202ENST00000393104 HECW1Q76N89 1606 aa16.34■□□□□ 0.21
PDCD4-202ENST00000393104 CLASP1Q7Z460 1538 aa16.33■□□□□ 0.2
PDCD4-202ENST00000393104 ITGAEP38570 1179 aa16.33■□□□□ 0.2
PDCD4-202ENST00000393104 HIRIP3Q9BW71 556 aaPredicted RBP16.32■□□□□ 0.2
PDCD4-202ENST00000393104 PTPRKQ15262 1439 aa16.3■□□□□ 0.2
PDCD4-202ENST00000393104 FHOD3Q2V2M9 1422 aa16.3■□□□□ 0.2
PDCD4-202ENST00000393104 CCDC18Q5T9S5 1454 aa16.29■□□□□ 0.2
PDCD4-202ENST00000393104 DENND4BO75064 1496 aaPredicted RBP16.29■□□□□ 0.2
PDCD4-202ENST00000393104 CCER2I3L3R5 266 aa16.28■□□□□ 0.2
PDCD4-202ENST00000393104 RAPGEF6Q8TEU7 1601 aa16.26■□□□□ 0.19
PDCD4-202ENST00000393104 TRIM52Q96A61 297 aa16.25■□□□□ 0.19
PDCD4-202ENST00000393104 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.23■□□□□ 0.191e-6■□□□□ 9.9
PDCD4-202ENST00000393104 EHBP1L1Q8N3D4 1523 aa16.22■□□□□ 0.19
PDCD4-202ENST00000393104 ABCA8O94911 1581 aa16.22■□□□□ 0.19
PDCD4-202ENST00000393104 TIMELESSQ9UNS1 1208 aa16.22■□□□□ 0.19
PDCD4-202ENST00000393104 ARHGEF11O15085 1522 aa16.21■□□□□ 0.19
PDCD4-202ENST00000393104 CHMP7Q8WUX9 453 aaPredicted RBP16.2■□□□□ 0.18
PDCD4-202ENST00000393104 PTPN23Q9H3S7 1636 aa16.2■□□□□ 0.18
PDCD4-202ENST00000393104 CARMIL2Q6F5E8 1435 aa16.19■□□□□ 0.18
PDCD4-202ENST00000393104 ADCY10Q96PN6 1610 aa16.19■□□□□ 0.18
PDCD4-202ENST00000393104 SUPT6HQ7KZ85 1726 aaKnown RBP16.17■□□□□ 0.18
PDCD4-202ENST00000393104 EPRSP07814 1512 aaKnown RBP16.15■□□□□ 0.18
PDCD4-202ENST00000393104 HFM1A2PYH4 1435 aa16.14■□□□□ 0.17
PDCD4-202ENST00000393104 KDM6BO15054 1643 aa16.13■□□□□ 0.17
PDCD4-202ENST00000393104 FGD6Q6ZV73 1430 aa16.13■□□□□ 0.17
PDCD4-202ENST00000393104 NAIPQ13075 1403 aa16.12■□□□□ 0.17
PDCD4-202ENST00000393104 NUP153P49790 1475 aaKnown RBP16.12■□□□□ 0.17
PDCD4-202ENST00000393104 NCOA2Q15596 1464 aa16.12■□□□□ 0.17
PDCD4-202ENST00000393104 CCDC184Q52MB2 194 aa16.12■□□□□ 0.17
PDCD4-202ENST00000393104 FANCIQ9NVI1 1328 aa16.12■□□□□ 0.17
PDCD4-202ENST00000393104 UACAQ9BZF9 1416 aa16.1■□□□□ 0.17
PDCD4-202ENST00000393104 MAGI3Q5TCQ9 1506 aa16.1■□□□□ 0.17
PDCD4-202ENST00000393104 WASHC2AQ641Q2 1341 aa16.09■□□□□ 0.17
PDCD4-202ENST00000393104 FAM50AQ14320 339 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms