RNA–Protein interactions for RNA: ENST00000381020.7

CDX2-201, Transcript of caudal type homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX2, Length 4,053 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-201ENST00000381020 SIN3AQ96ST3 1273 aa17.76■□□□□ 0.43
CDX2-201ENST00000381020 NESP48681 1621 aa17.75■□□□□ 0.43
CDX2-201ENST00000381020 DDX10Q13206 875 aaKnown RBP17.74■□□□□ 0.43
CDX2-201ENST00000381020 FHOD3Q2V2M9 1422 aa17.73■□□□□ 0.43
CDX2-201ENST00000381020 ERCC6Q03468 1493 aa17.73■□□□□ 0.43
CDX2-201ENST00000381020 FHAD1B1AJZ9 1412 aa17.73■□□□□ 0.43
CDX2-201ENST00000381020 NEFLP07196 543 aa17.72■□□□□ 0.43
CDX2-201ENST00000381020 TONSLQ96HA7 1378 aa17.72■□□□□ 0.43
CDX2-201ENST00000381020 CUX1P39880 1505 aa17.71■□□□□ 0.43
CDX2-201ENST00000381020 PEG3Q9GZU2 1588 aa17.71■□□□□ 0.43
CDX2-201ENST00000381020 HMGXB3Q12766 1538 aa17.7■□□□□ 0.42
CDX2-201ENST00000381020 CC2D2AQ9P2K1 1620 aa17.69■□□□□ 0.42
CDX2-201ENST00000381020 KIF21BO75037 1637 aa17.67■□□□□ 0.42
CDX2-201ENST00000381020 TOP2BQ02880 1626 aa17.66■□□□□ 0.42
CDX2-201ENST00000381020 ANP32CO43423 234 aa17.65■□□□□ 0.42
CDX2-201ENST00000381020 SCAF1Q9H7N4 1312 aaKnown RBP17.63■□□□□ 0.41
CDX2-201ENST00000381020 PRXQ9BXM0 1461 aa17.62■□□□□ 0.41
CDX2-201ENST00000381020 ARAP1Q96P48 1450 aa17.62■□□□□ 0.41
CDX2-201ENST00000381020 RAB3GAP2Q9H2M9 1393 aa17.58■□□□□ 0.41
CDX2-201ENST00000381020 CFDP1Q9UEE9 299 aaPredicted RBP17.56■□□□□ 0.4
CDX2-201ENST00000381020 PLEKHD1A6NEE1 506 aa17.56■□□□□ 0.4
CDX2-201ENST00000381020 BCANQ96GW7 911 aa17.56■□□□□ 0.4
CDX2-201ENST00000381020 KCNH8Q96L42 1107 aa17.56■□□□□ 0.4
CDX2-201ENST00000381020 SLC4A1APQ9BWU0 796 aaKnown RBP17.54■□□□□ 0.4
CDX2-201ENST00000381020 CLSPNQ9HAW4 1339 aa17.53■□□□□ 0.4
CDX2-201ENST00000381020 ARHGAP35Q9NRY4 1499 aa17.53■□□□□ 0.4
CDX2-201ENST00000381020 FMN1Q68DA7 1419 aa17.53■□□□□ 0.4
CDX2-201ENST00000381020 SETD5Q9C0A6 1442 aa17.52■□□□□ 0.4
CDX2-201ENST00000381020 TSPY4P0CV99 314 aa17.52■□□□□ 0.4
CDX2-201ENST00000381020 TSPY10P0CW01 314 aa17.52■□□□□ 0.4
CDX2-201ENST00000381020 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.52■□□□□ 0.4
CDX2-201ENST00000381020 GAPVD1Q14C86 1478 aa17.51■□□□□ 0.39
CDX2-201ENST00000381020 AQRO60306 1485 aaKnown RBP eCLIP17.5■□□□□ 0.39
CDX2-201ENST00000381020 ERICH3Q5RHP9 1530 aa17.49■□□□□ 0.39
CDX2-201ENST00000381020 DHX57Q6P158 1386 aaKnown RBP17.49■□□□□ 0.39
CDX2-201ENST00000381020 POLA1P09884 1462 aaPredicted RBP17.49■□□□□ 0.39
CDX2-201ENST00000381020 TOPBP1Q92547 1522 aa17.47■□□□□ 0.39
CDX2-201ENST00000381020 FOXD1Q16676 465 aa17.47■□□□□ 0.39
CDX2-201ENST00000381020 KDM2AQ9Y2K7 1162 aa17.46■□□□□ 0.39
CDX2-201ENST00000381020 PHLDB1Q86UU1 1377 aa17.44■□□□□ 0.38
CDX2-201ENST00000381020 JPH4Q96JJ6 628 aa17.39■□□□□ 0.37
CDX2-201ENST00000381020 EIF4G2P78344 907 aaKnown RBP eCLIP17.36■□□□□ 0.37
CDX2-201ENST00000381020 LRRC9Q6ZRR7 1453 aa17.34■□□□□ 0.37
CDX2-201ENST00000381020 RGL3Q3MIN7 710 aa17.34■□□□□ 0.37
CDX2-201ENST00000381020 HNRNPUQ00839 825 aaKnown RBP eCLIP17.33■□□□□ 0.36
CDX2-201ENST00000381020 FAM9BQ8IZU0 186 aa17.33■□□□□ 0.36
CDX2-201ENST00000381020 BIVM-ERCC5R4GMW8 1640 aa17.32■□□□□ 0.36
CDX2-201ENST00000381020 DNMBPQ6XZF7 1577 aa17.31■□□□□ 0.36
CDX2-201ENST00000381020 PPP1R15AO75807 674 aaPredicted RBP17.29■□□□□ 0.36
CDX2-201ENST00000381020 NPM1P06748 294 aaKnown RBP eCLIP17.29■□□□□ 0.36
CDX2-201ENST00000381020 MPHOSPH9Q99550 1183 aa17.28■□□□□ 0.36
CDX2-201ENST00000381020 CARMIL2Q6F5E8 1435 aa17.27■□□□□ 0.36
CDX2-201ENST00000381020 ZNF644Q9H582 1327 aaPredicted RBP17.27■□□□□ 0.36
CDX2-201ENST00000381020 ABCA10Q8WWZ4 1543 aa17.27■□□□□ 0.35
CDX2-201ENST00000381020 FKBP8Q14318 412 aa17.26■□□□□ 0.35
CDX2-201ENST00000381020 SENP3-EIF4A1A0A087X0R7 540 aa17.26■□□□□ 0.35
CDX2-201ENST00000381020 RRBP1Q9P2E9 1410 aaKnown RBP17.26■□□□□ 0.35
CDX2-201ENST00000381020 CHGAP10645 457 aaKnown RBP17.26■□□□□ 0.35
CDX2-201ENST00000381020 URB2Q14146 1524 aaKnown RBP17.25■□□□□ 0.35
CDX2-201ENST00000381020 CASKIN1Q8WXD9 1431 aa17.25■□□□□ 0.35
CDX2-201ENST00000381020 TIMELESSQ9UNS1 1208 aa17.23■□□□□ 0.35
CDX2-201ENST00000381020 FGD6Q6ZV73 1430 aa17.23■□□□□ 0.35
CDX2-201ENST00000381020 MRS2Q9HD23 443 aa17.21■□□□□ 0.35
CDX2-201ENST00000381020 HNRNPMP52272 730 aaKnown RBP eCLIP17.21■□□□□ 0.35
CDX2-201ENST00000381020 PKD2Q13563 968 aa17.21■□□□□ 0.35
CDX2-201ENST00000381020 ERICH6Q7L0X2 663 aa17.2■□□□□ 0.34
CDX2-201ENST00000381020 GRIN2BQ13224 1484 aa17.2■□□□□ 0.34
CDX2-201ENST00000381020 L3MBTL2Q969R5 705 aa17.19■□□□□ 0.34
CDX2-201ENST00000381020 SALL2Q9Y467 1007 aaPredicted RBP17.19■□□□□ 0.34
CDX2-201ENST00000381020 SENP3Q9H4L4 574 aaPredicted RBP17.18■□□□□ 0.34
CDX2-201ENST00000381020 LAMC3Q9Y6N6 1575 aa17.18■□□□□ 0.34
CDX2-201ENST00000381020 MRC2Q9UBG0 1479 aa17.18■□□□□ 0.34
CDX2-201ENST00000381020 HSPA5P11021 654 aaKnown RBP17.18■□□□□ 0.34
CDX2-201ENST00000381020 TIAM1Q13009 1591 aa17.17■□□□□ 0.34
CDX2-201ENST00000381020 CCDC18Q5T9S5 1454 aa17.17■□□□□ 0.34
CDX2-201ENST00000381020 NCOA2Q15596 1464 aa17.16■□□□□ 0.34
CDX2-201ENST00000381020 MYOM3Q5VTT5 1437 aa17.16■□□□□ 0.34
CDX2-201ENST00000381020 FYCO1Q9BQS8 1478 aa17.15■□□□□ 0.34
CDX2-201ENST00000381020 IRX6P78412 446 aaPredicted RBP17.15■□□□□ 0.34
CDX2-201ENST00000381020 CARD11Q9BXL7 1154 aa17.15■□□□□ 0.34
CDX2-201ENST00000381020 DCAF11Q8TEB1 546 aa17.13■□□□□ 0.33
CDX2-201ENST00000381020 NUP155O75694 1391 aa17.11■□□□□ 0.33
CDX2-201ENST00000381020 TMC1Q8TDI8 760 aa17.11■□□□□ 0.33
CDX2-201ENST00000381020 ZNF608Q9ULD9 1512 aaPredicted RBP17.09■□□□□ 0.33
CDX2-201ENST00000381020 PCF11O94913 1555 aaKnown RBP17.09■□□□□ 0.33
CDX2-201ENST00000381020 PTPRGP23470 1445 aa17.09■□□□□ 0.33
CDX2-201ENST00000381020 EFCAB5A4FU69 1503 aa17.09■□□□□ 0.33
CDX2-201ENST00000381020 SNAPC4Q5SXM2 1469 aa17.08■□□□□ 0.32
CDX2-201ENST00000381020 IFT140Q96RY7 1462 aa17.07■□□□□ 0.32
CDX2-201ENST00000381020 ANKRD30AQ9BXX3 1397 aa17.06■□□□□ 0.32
CDX2-201ENST00000381020 PRDM2Q13029 1718 aa17.05■□□□□ 0.32
CDX2-201ENST00000381020 CDK13Q14004 1512 aaKnown RBP17.02■□□□□ 0.32
CDX2-201ENST00000381020 PRG4Q92954 1404 aaPredicted RBP17.01■□□□□ 0.31
CDX2-201ENST00000381020 UACAQ9BZF9 1416 aa17■□□□□ 0.31
CDX2-201ENST00000381020 EFCAB2Q5VUJ9 269 aa16.99■□□□□ 0.31
CDX2-201ENST00000381020 SUPT16HQ9Y5B9 1047 aaKnown RBP16.98■□□□□ 0.31
CDX2-201ENST00000381020 CUL7Q14999 1698 aa16.98■□□□□ 0.31
CDX2-201ENST00000381020 PLPPR3Q6T4P5 718 aa16.97■□□□□ 0.31
CDX2-201ENST00000381020 STAG3Q9UJ98 1225 aa16.95■□□□□ 0.3
CDX2-201ENST00000381020 EPRSP07814 1512 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms