RNA–Protein interactions for RNA: ENST00000381020.7

CDX2-201, Transcript of caudal type homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX2, Length 4,053 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-201ENST00000381020 NISCHQ9Y2I1 1504 aa24.44■■□□□ 1.5
CDX2-201ENST00000381020 DCAF8L2P0C7V8 631 aa22.65■■□□□ 1.22
CDX2-201ENST00000381020 SHROOM4Q9ULL8 1493 aa22.09■■□□□ 1.13
CDX2-201ENST00000381020 SUPT5HO00267 1087 aaKnown RBP21.88■■□□□ 1.09
CDX2-201ENST00000381020 EHMT2Q96KQ7 1210 aa20.67■□□□□ 0.9
CDX2-201ENST00000381020 FAM9AQ8IZU1 332 aaPredicted RBP20.45■□□□□ 0.86
CDX2-201ENST00000381020 ABCC9O60706 1549 aa20.42■□□□□ 0.86
CDX2-201ENST00000381020 ZCCHC6Q5VYS8 1495 aaKnown RBP20.41■□□□□ 0.86
CDX2-201ENST00000381020 CCDC180Q9P1Z9 1646 aa20.3■□□□□ 0.84
CDX2-201ENST00000381020 CHIC1Q5VXU3 224 aa20.3■□□□□ 0.84
CDX2-201ENST00000381020 TRIM41Q8WV44 630 aa20.22■□□□□ 0.83
CDX2-201ENST00000381020 PCGF6Q9BYE7 350 aa20.13■□□□□ 0.81
CDX2-201ENST00000381020 LOC105371045A0A1W2PR82 267 aa20.07■□□□□ 0.8
CDX2-201ENST00000381020 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.78
CDX2-201ENST00000381020 TTBK1Q5TCY1 1321 aaPredicted RBP19.87■□□□□ 0.77
CDX2-201ENST00000381020 SCRIBQ14160 1630 aa19.87■□□□□ 0.77
CDX2-201ENST00000381020 PPARGC1BQ86YN6 1023 aaKnown RBP19.73■□□□□ 0.75
CDX2-201ENST00000381020 RANGAP1P46060 587 aaPredicted RBP19.72■□□□□ 0.75
CDX2-201ENST00000381020 UBTFP17480 764 aaKnown RBP19.62■□□□□ 0.73
CDX2-201ENST00000381020 DCAF1Q9Y4B6 1507 aa19.54■□□□□ 0.72
CDX2-201ENST00000381020 RSF1Q96T23 1441 aaPredicted RBP19.47■□□□□ 0.71
CDX2-201ENST00000381020 APLP2Q06481 763 aa19.46■□□□□ 0.71
CDX2-201ENST00000381020 MYO15BQ96JP2 1530 aa19.45■□□□□ 0.7
CDX2-201ENST00000381020 TRIM26Q12899 539 aaPredicted RBP19.43■□□□□ 0.7
CDX2-201ENST00000381020 HRCP23327 699 aa19.35■□□□□ 0.69
CDX2-201ENST00000381020 NACADO15069 1562 aa19.33■□□□□ 0.69
CDX2-201ENST00000381020 CECR2Q9BXF3 1484 aa19.32■□□□□ 0.68
CDX2-201ENST00000381020 RB1CC1Q8TDY2 1594 aa19.28■□□□□ 0.68
CDX2-201ENST00000381020 CCER1Q8TC90 406 aaPredicted RBP19.25■□□□□ 0.67
CDX2-201ENST00000381020 ATP1B4Q9UN42 357 aaPredicted RBP19.16■□□□□ 0.66
CDX2-201ENST00000381020 ZEB1P37275 1124 aaPredicted RBP19.09■□□□□ 0.65
CDX2-201ENST00000381020 MROH2BQ7Z745 1585 aa19.07■□□□□ 0.64
CDX2-201ENST00000381020 CSRNP3Q8WYN3 585 aa19.02■□□□□ 0.64
CDX2-201ENST00000381020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19■□□□□ 0.63
CDX2-201ENST00000381020 HNRNPUL2Q1KMD3 747 aaKnown RBP18.97■□□□□ 0.63
CDX2-201ENST00000381020 BAZ1AQ9NRL2 1556 aaPredicted RBP18.91■□□□□ 0.62
CDX2-201ENST00000381020 ITGAEP38570 1179 aa18.87■□□□□ 0.61
CDX2-201ENST00000381020 WIZO95785 1651 aa18.84■□□□□ 0.61
CDX2-201ENST00000381020 CCDC88BA6NC98 1476 aa18.72■□□□□ 0.59
CDX2-201ENST00000381020 BAZ1BQ9UIG0 1483 aaKnown RBP18.7■□□□□ 0.58
CDX2-201ENST00000381020 ABCC8Q09428 1581 aa18.66■□□□□ 0.58
CDX2-201ENST00000381020 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
CDX2-201ENST00000381020 P3H3Q8IVL6 736 aa18.64■□□□□ 0.57
CDX2-201ENST00000381020 SOGA1O94964 1423 aa18.63■□□□□ 0.57
CDX2-201ENST00000381020 SMARCA4P51532 1647 aa18.53■□□□□ 0.56
CDX2-201ENST00000381020 YTHDC1Q96MU7 727 aaKnown RBP18.53■□□□□ 0.56
CDX2-201ENST00000381020 CEP162Q5TB80 1403 aa18.53■□□□□ 0.56
CDX2-201ENST00000381020 TOP2AP11388 1531 aaKnown RBP18.52■□□□□ 0.56
CDX2-201ENST00000381020 FAM50AQ14320 339 aaKnown RBP18.48■□□□□ 0.55
CDX2-201ENST00000381020 CLIP1P30622 1438 aa18.44■□□□□ 0.54
CDX2-201ENST00000381020 ATAD2BQ9ULI0 1458 aa18.43■□□□□ 0.54
CDX2-201ENST00000381020 EEA1Q15075 1411 aa18.42■□□□□ 0.54
CDX2-201ENST00000381020 TNIKQ9UKE5 1360 aa18.41■□□□□ 0.54
CDX2-201ENST00000381020 GOLGA3Q08378 1498 aa18.41■□□□□ 0.54
CDX2-201ENST00000381020 CENPBP07199 599 aaPredicted RBP18.39■□□□□ 0.53
CDX2-201ENST00000381020 DIEXFQ68CQ4 756 aaKnown RBP18.39■□□□□ 0.53
CDX2-201ENST00000381020 ARID3CA6NKF2 412 aa18.39■□□□□ 0.53
CDX2-201ENST00000381020 RUSC2Q8N2Y8 1516 aa18.37■□□□□ 0.53
CDX2-201ENST00000381020 FBLN2P98095 1184 aa18.34■□□□□ 0.53
CDX2-201ENST00000381020 SMARCA2P51531 1590 aa18.34■□□□□ 0.53
CDX2-201ENST00000381020 CEP164Q9UPV0 1460 aa18.29■□□□□ 0.52
CDX2-201ENST00000381020 NEUROD1Q13562 356 aa18.26■□□□□ 0.51
CDX2-201ENST00000381020 KIF27Q86VH2 1401 aa18.25■□□□□ 0.51
CDX2-201ENST00000381020 ZNF316A6NFI3 1004 aaPredicted RBP18.16■□□□□ 0.5
CDX2-201ENST00000381020 BICRAQ9NZM4 1560 aa18.16■□□□□ 0.5
CDX2-201ENST00000381020 CUX2O14529 1486 aa18.14■□□□□ 0.49
CDX2-201ENST00000381020 TRIM52Q96A61 297 aa18.11■□□□□ 0.49
CDX2-201ENST00000381020 RAPGEF2Q9Y4G8 1499 aa18.1■□□□□ 0.49
CDX2-201ENST00000381020 CADPSQ9ULU8 1353 aa18.07■□□□□ 0.48
CDX2-201ENST00000381020 CARMIL1Q5VZK9 1371 aa18.06■□□□□ 0.48
CDX2-201ENST00000381020 KANK4Q5T7N3 995 aaPredicted RBP18.06■□□□□ 0.48
CDX2-201ENST00000381020 EIF4G1Q04637 1599 aaKnown RBP18.03■□□□□ 0.48
CDX2-201ENST00000381020 VPS8Q8N3P4 1428 aa18.01■□□□□ 0.47
CDX2-201ENST00000381020 UNC13AQ9UPW8 1703 aa18.01■□□□□ 0.47
CDX2-201ENST00000381020 CNGB1Q14028 1251 aaPredicted RBP18.01■□□□□ 0.47
CDX2-201ENST00000381020 NCAPD3P42695 1498 aa18■□□□□ 0.47
CDX2-201ENST00000381020 POLR3GLQ9BT43 218 aa17.99■□□□□ 0.47
CDX2-201ENST00000381020 CHIC2Q9UKJ5 165 aa17.98■□□□□ 0.47
CDX2-201ENST00000381020 TDRD9Q8NDG6 1382 aaKnown RBP17.97■□□□□ 0.47
CDX2-201ENST00000381020 ZNF777Q9ULD5 760 aaPredicted RBP17.95■□□□□ 0.46
CDX2-201ENST00000381020 SYNJ1O43426 1573 aa17.94■□□□□ 0.46
CDX2-201ENST00000381020 MTUS2Q5JR59 1369 aa17.94■□□□□ 0.46
CDX2-201ENST00000381020 MYT1LQ9UL68 1186 aa17.93■□□□□ 0.46
CDX2-201ENST00000381020 CHMP7Q8WUX9 453 aaPredicted RBP17.9■□□□□ 0.46
CDX2-201ENST00000381020 PELP1Q8IZL8 1130 aaKnown RBP17.88■□□□□ 0.45
CDX2-201ENST00000381020 GTF3C3Q9Y5Q9 886 aa17.86■□□□□ 0.45
CDX2-201ENST00000381020 FANCD2Q9BXW9 1451 aa17.84■□□□□ 0.45
CDX2-201ENST00000381020 ZNF326Q5BKZ1 582 aaKnown RBP17.83■□□□□ 0.45
CDX2-201ENST00000381020 HIRIP3Q9BW71 556 aaPredicted RBP17.83■□□□□ 0.44
CDX2-201ENST00000381020 DNAJC5BQ9UF47 199 aa17.82■□□□□ 0.44
CDX2-201ENST00000381020 CDK11AQ9UQ88 783 aaPredicted RBP17.82■□□□□ 0.44
CDX2-201ENST00000381020 RRP7BPQ9NSQ0 103 aa17.82■□□□□ 0.44
CDX2-201ENST00000381020 IGF1RP08069 1367 aa17.81■□□□□ 0.44
CDX2-201ENST00000381020 MIER1Q8N108 512 aa17.81■□□□□ 0.44
CDX2-201ENST00000381020 CCNB3Q8WWL7 1395 aa17.81■□□□□ 0.44
CDX2-201ENST00000381020 ACIN1Q9UKV3 1341 aaKnown RBP17.79■□□□□ 0.44
CDX2-201ENST00000381020 CFTRP13569 1480 aa17.79■□□□□ 0.44
CDX2-201ENST00000381020 PDS5BQ9NTI5 1447 aa17.79■□□□□ 0.44
CDX2-201ENST00000381020 FGD5Q6ZNL6 1462 aa17.77■□□□□ 0.44
CDX2-201ENST00000381020 RAD54L2Q9Y4B4 1467 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms