RNA–Protein interactions for RNA: ENST00000357732.8

RTN4-204, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,390 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-204ENST00000357732 SETD5Q9C0A6 1442 aa25.56■■□□□ 1.68
RTN4-204ENST00000357732 CC2D2AQ9P2K1 1620 aa25.54■■□□□ 1.68
RTN4-204ENST00000357732 ITGAEP38570 1179 aa25.51■■□□□ 1.67
RTN4-204ENST00000357732 TIMELESSQ9UNS1 1208 aa25.51■■□□□ 1.67
RTN4-204ENST00000357732 FANCD2Q9BXW9 1451 aa25.49■■□□□ 1.67
RTN4-204ENST00000357732 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.49■■□□□ 1.67
RTN4-204ENST00000357732 EFCAB5A4FU69 1503 aa25.48■■□□□ 1.67
RTN4-204ENST00000357732 AQRO60306 1485 aaKnown RBP eCLIP25.46■■□□□ 1.677e-8■■■■■ 28.3
RTN4-204ENST00000357732 PCF11O94913 1555 aaKnown RBP25.45■■□□□ 1.66
RTN4-204ENST00000357732 FYCO1Q9BQS8 1478 aa25.44■■□□□ 1.66
RTN4-204ENST00000357732 PHLDB1Q86UU1 1377 aa25.44■■□□□ 1.66
RTN4-204ENST00000357732 SUPT16HQ9Y5B9 1047 aaKnown RBP25.41■■□□□ 1.66
RTN4-204ENST00000357732 RAD54L2Q9Y4B4 1467 aa25.39■■□□□ 1.66
RTN4-204ENST00000357732 CUL7Q14999 1698 aa25.39■■□□□ 1.65
RTN4-204ENST00000357732 DNMBPQ6XZF7 1577 aa25.38■■□□□ 1.65
RTN4-204ENST00000357732 ABCA10Q8WWZ4 1543 aa25.38■■□□□ 1.65
RTN4-204ENST00000357732 P3H3Q8IVL6 736 aa25.38■■□□□ 1.65
RTN4-204ENST00000357732 CASKIN1Q8WXD9 1431 aa25.36■■□□□ 1.65
RTN4-204ENST00000357732 POLA1P09884 1462 aaPredicted RBP25.33■■□□□ 1.65
RTN4-204ENST00000357732 TOPBP1Q92547 1522 aa25.33■■□□□ 1.65
RTN4-204ENST00000357732 NESP48681 1621 aa25.32■■□□□ 1.64
RTN4-204ENST00000357732 CTTNBP2Q8WZ74 1663 aa25.32■■□□□ 1.64
RTN4-204ENST00000357732 WDR97A6NE52 1622 aa25.31■■□□□ 1.64
RTN4-204ENST00000357732 FHOD3Q2V2M9 1422 aa25.28■■□□□ 1.64
RTN4-204ENST00000357732 ATP1B4Q9UN42 357 aaPredicted RBP25.27■■□□□ 1.64
RTN4-204ENST00000357732 FMN1Q68DA7 1419 aa25.27■■□□□ 1.64
RTN4-204ENST00000357732 FAM50AQ14320 339 aaKnown RBP25.25■■□□□ 1.63
RTN4-204ENST00000357732 FGD6Q6ZV73 1430 aa25.18■■□□□ 1.62
RTN4-204ENST00000357732 THOC2Q8NI27 1593 aaKnown RBP25.17■■□□□ 1.62
RTN4-204ENST00000357732 SNAPC4Q5SXM2 1469 aa25.17■■□□□ 1.62
RTN4-204ENST00000357732 PPP1R15AO75807 674 aaPredicted RBP25.16■■□□□ 1.62
RTN4-204ENST00000357732 CCER2I3L3R5 266 aa25.15■■□□□ 1.62
RTN4-204ENST00000357732 SIN3AQ96ST3 1273 aa25.14■■□□□ 1.62
RTN4-204ENST00000357732 URB2Q14146 1524 aaKnown RBP25.13■■□□□ 1.61
RTN4-204ENST00000357732 SAMD9Q5K651 1589 aa25.13■■□□□ 1.61
RTN4-204ENST00000357732 HFM1A2PYH4 1435 aa25.13■■□□□ 1.61
RTN4-204ENST00000357732 UACAQ9BZF9 1416 aa25.11■■□□□ 1.61
RTN4-204ENST00000357732 CCDC18Q5T9S5 1454 aa25.09■■□□□ 1.61
RTN4-204ENST00000357732 DDX10Q13206 875 aaKnown RBP25.09■■□□□ 1.61
RTN4-204ENST00000357732 LAMC3Q9Y6N6 1575 aa25.08■■□□□ 1.61
RTN4-204ENST00000357732 KIF21AQ7Z4S6 1674 aa25.08■■□□□ 1.61
RTN4-204ENST00000357732 PTPN23Q9H3S7 1636 aa25.07■■□□□ 1.6
RTN4-204ENST00000357732 TDRD9Q8NDG6 1382 aaKnown RBP25.06■■□□□ 1.6
RTN4-204ENST00000357732 ABCA5Q8WWZ7 1642 aa25.05■■□□□ 1.6
RTN4-204ENST00000357732 KCNH8Q96L42 1107 aa25.04■■□□□ 1.6
RTN4-204ENST00000357732 MTUS2Q5JR59 1369 aa25.04■■□□□ 1.6
RTN4-204ENST00000357732 TSHZ2Q9NRE2 1034 aa25.03■■□□□ 1.6
RTN4-204ENST00000357732 TONSLQ96HA7 1378 aa25.03■■□□□ 1.6
RTN4-204ENST00000357732 EHBP1L1Q8N3D4 1523 aa25.03■■□□□ 1.6
RTN4-204ENST00000357732 SUPT6HQ7KZ85 1726 aaKnown RBP25.02■■□□□ 1.6
RTN4-204ENST00000357732 GRIN2BQ13224 1484 aa25.02■■□□□ 1.6
RTN4-204ENST00000357732 MYOM3Q5VTT5 1437 aa25.02■■□□□ 1.6
RTN4-204ENST00000357732 ANP32CO43423 234 aa25.01■■□□□ 1.59
RTN4-204ENST00000357732 GAPVD1Q14C86 1478 aa24.98■■□□□ 1.59
RTN4-204ENST00000357732 NCOA2Q15596 1464 aa24.98■■□□□ 1.59
RTN4-204ENST00000357732 LRRIQ1Q96JM4 1722 aa24.97■■□□□ 1.59
RTN4-204ENST00000357732 NAIPQ13075 1403 aa24.96■■□□□ 1.59
RTN4-204ENST00000357732 ARHGEF11O15085 1522 aa24.95■■□□□ 1.58
RTN4-204ENST00000357732 DNAJC5BQ9UF47 199 aa24.94■■□□□ 1.58
RTN4-204ENST00000357732 PTPRKQ15262 1439 aa24.93■■□□□ 1.58
RTN4-204ENST00000357732 PDS5BQ9NTI5 1447 aa24.93■■□□□ 1.58
RTN4-204ENST00000357732 UGGT2Q9NYU1 1516 aa24.92■■□□□ 1.58
RTN4-204ENST00000357732 AKNAQ7Z591 1439 aa24.91■■□□□ 1.58
RTN4-204ENST00000357732 NEFLP07196 543 aa24.9■■□□□ 1.58
RTN4-204ENST00000357732 TCOF1Q13428 1488 aaKnown RBP24.89■■□□□ 1.58
RTN4-204ENST00000357732 GCC2Q8IWJ2 1684 aa24.89■■□□□ 1.58
RTN4-204ENST00000357732 HECW1Q76N89 1606 aa24.87■■□□□ 1.57
RTN4-204ENST00000357732 FKBP8Q14318 412 aa24.86■■□□□ 1.57
RTN4-204ENST00000357732 KDM5BQ9UGL1 1544 aa24.86■■□□□ 1.57
RTN4-204ENST00000357732 TARBP1Q13395 1621 aaKnown RBP24.8■■□□□ 1.56
RTN4-204ENST00000357732 HIRIP3Q9BW71 556 aaPredicted RBP24.79■■□□□ 1.56
RTN4-204ENST00000357732 MIA2Q96PC5 1412 aa24.78■■□□□ 1.56
RTN4-204ENST00000357732 MAGI3Q5TCQ9 1506 aa24.75■■□□□ 1.55
RTN4-204ENST00000357732 ANP32EQ9BTT0 268 aa24.75■■□□□ 1.55
RTN4-204ENST00000357732 TRIM52Q96A61 297 aa24.7■■□□□ 1.54
RTN4-204ENST00000357732 BCANQ96GW7 911 aa24.69■■□□□ 1.54
RTN4-204ENST00000357732 IQGAP2Q13576 1575 aa24.69■■□□□ 1.54
RTN4-204ENST00000357732 PBRM1Q86U86 1689 aa24.68■■□□□ 1.54
RTN4-204ENST00000357732 EPRSP07814 1512 aaKnown RBP24.68■■□□□ 1.54
RTN4-204ENST00000357732 DENND4BO75064 1496 aaPredicted RBP24.67■■□□□ 1.54
RTN4-204ENST00000357732 RRP7BPQ9NSQ0 103 aa24.62■■□□□ 1.53
RTN4-204ENST00000357732 ADAMTS12P58397 1594 aa24.62■■□□□ 1.53
RTN4-204ENST00000357732 WDR62O43379 1518 aa24.62■■□□□ 1.53
RTN4-204ENST00000357732 CHIC2Q9UKJ5 165 aa24.62■■□□□ 1.53
RTN4-204ENST00000357732 ROCK1Q13464 1354 aa24.62■■□□□ 1.53
RTN4-204ENST00000357732 ERICH6BQ5W0A0 696 aa24.61■■□□□ 1.53
RTN4-204ENST00000357732 EIF4G2P78344 907 aaKnown RBP eCLIP24.6■■□□□ 1.539e-7■■■■□ 19.9
RTN4-204ENST00000357732 CNTLNQ9NXG0 1405 aa24.6■■□□□ 1.53
RTN4-204ENST00000357732 WASHC2AQ641Q2 1341 aa24.59■■□□□ 1.53
RTN4-204ENST00000357732 CDK13Q14004 1512 aaKnown RBP24.59■■□□□ 1.53
RTN4-204ENST00000357732 HSPA5P11021 654 aaKnown RBP24.58■■□□□ 1.52
RTN4-204ENST00000357732 ARID3CA6NKF2 412 aa24.56■■□□□ 1.52
RTN4-204ENST00000357732 MRC2Q9UBG0 1479 aa24.56■■□□□ 1.52
RTN4-204ENST00000357732 KDM6BO15054 1643 aa24.56■■□□□ 1.52
RTN4-204ENST00000357732 RBM19Q9Y4C8 960 aaKnown RBP24.55■■□□□ 1.52
RTN4-204ENST00000357732 NCOA1Q15788 1441 aa24.54■■□□□ 1.52
RTN4-204ENST00000357732 MPHOSPH9Q99550 1183 aa24.54■■□□□ 1.52
RTN4-204ENST00000357732 POLR1AO95602 1720 aaPredicted RBP24.53■■□□□ 1.52
RTN4-204ENST00000357732 RPRD2Q5VT52 1461 aaKnown RBP24.53■■□□□ 1.52
RTN4-204ENST00000357732 DNMT1P26358 1616 aaKnown RBP24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms