RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 ITGAEP38570 1179 aa22.32■■□□□ 1.16
RTN3-205ENST00000356000 TOPBP1Q92547 1522 aa22.28■■□□□ 1.16
RTN3-205ENST00000356000 KCNH8Q96L42 1107 aa22.23■■□□□ 1.15
RTN3-205ENST00000356000 CDK11AQ9UQ88 783 aaPredicted RBP22.18■■□□□ 1.14
RTN3-205ENST00000356000 CEP162Q5TB80 1403 aa22.17■■□□□ 1.14
RTN3-205ENST00000356000 EIF4G3O43432 1585 aaKnown RBP22.16■■□□□ 1.14
RTN3-205ENST00000356000 EIF5BO60841 1220 aaKnown RBP22.15■■□□□ 1.14
RTN3-205ENST00000356000 TARBP1Q13395 1621 aaKnown RBP22.14■■□□□ 1.13
RTN3-205ENST00000356000 HNRNPUL2Q1KMD3 747 aaKnown RBP22.13■■□□□ 1.13
RTN3-205ENST00000356000 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.13■■□□□ 1.13
RTN3-205ENST00000356000 RIMBP3CA6NJZ7 1639 aa22.13■■□□□ 1.13
RTN3-205ENST00000356000 RIMBP3BA6NNM3 1639 aa22.13■■□□□ 1.13
RTN3-205ENST00000356000 RIMBP3Q9UFD9 1639 aa22.13■■□□□ 1.13
RTN3-205ENST00000356000 IL27Q8NEV9 243 aa22.12■■□□□ 1.13
RTN3-205ENST00000356000 ZNF608Q9ULD9 1512 aaPredicted RBP22.07■■□□□ 1.12
RTN3-205ENST00000356000 NBR1Q14596 966 aa22.04■■□□□ 1.12
RTN3-205ENST00000356000 NOP58Q9Y2X3 529 aaKnown RBP22.04■■□□□ 1.12
RTN3-205ENST00000356000 ARHGEF11O15085 1522 aa22.04■■□□□ 1.12
RTN3-205ENST00000356000 PKNOX2Q96KN3 472 aa22.03■■□□□ 1.12
RTN3-205ENST00000356000 TNIKQ9UKE5 1360 aa22■■□□□ 1.11
RTN3-205ENST00000356000 POLA1P09884 1462 aaPredicted RBP22■■□□□ 1.11
RTN3-205ENST00000356000 RTN4Q9NQC3 1192 aaKnown RBP21.99■■□□□ 1.11
RTN3-205ENST00000356000 CHD1O14646 1710 aa21.98■■□□□ 1.11
RTN3-205ENST00000356000 MAGI1Q96QZ7 1491 aaPredicted RBP21.95■■□□□ 1.11
RTN3-205ENST00000356000 DHX57Q6P158 1386 aaKnown RBP21.94■■□□□ 1.1
RTN3-205ENST00000356000 PAK3O75914 559 aaPredicted RBP21.91■■□□□ 1.1
RTN3-205ENST00000356000 RTL5Q5HYW3 569 aaPredicted RBP21.9■■□□□ 1.1
RTN3-205ENST00000356000 SYNJ1O43426 1573 aa21.9■■□□□ 1.1
RTN3-205ENST00000356000 SOGA1O94964 1423 aa21.89■■□□□ 1.1
RTN3-205ENST00000356000 CLASP1Q7Z460 1538 aa21.87■■□□□ 1.09
RTN3-205ENST00000356000 SLC24A1O60721 1099 aa21.87■■□□□ 1.09
RTN3-205ENST00000356000 GRIN2BQ13224 1484 aa21.86■■□□□ 1.09
RTN3-205ENST00000356000 TRIM52Q96A61 297 aa21.84■■□□□ 1.09
RTN3-205ENST00000356000 AQRO60306 1485 aaKnown RBP eCLIP21.84■■□□□ 1.092e-7■■■■□ 19.7
RTN3-205ENST00000356000 FGD5Q6ZNL6 1462 aa21.83■■□□□ 1.09
RTN3-205ENST00000356000 C11orf95C9JLR9 678 aaPredicted RBP21.82■■□□□ 1.08
RTN3-205ENST00000356000 CCER2I3L3R5 266 aa21.82■■□□□ 1.08
RTN3-205ENST00000356000 SYNJ2O15056 1496 aa21.79■■□□□ 1.08
RTN3-205ENST00000356000 WASHC2AQ641Q2 1341 aa21.79■■□□□ 1.08
RTN3-205ENST00000356000 CUX1P39880 1505 aa21.79■■□□□ 1.08
RTN3-205ENST00000356000 SNAPC4Q5SXM2 1469 aa21.78■■□□□ 1.08
RTN3-205ENST00000356000 ARAP1Q96P48 1450 aa21.78■■□□□ 1.08
RTN3-205ENST00000356000 PBRM1Q86U86 1689 aa21.75■■□□□ 1.07
RTN3-205ENST00000356000 ABCA10Q8WWZ4 1543 aa21.75■■□□□ 1.07
RTN3-205ENST00000356000 PPP4R2Q9NY27 417 aa21.75■■□□□ 1.07
RTN3-205ENST00000356000 RAD54L2Q9Y4B4 1467 aa21.74■■□□□ 1.07
RTN3-205ENST00000356000 ABCA5Q8WWZ7 1642 aa21.72■■□□□ 1.07
RTN3-205ENST00000356000 WASHC2CQ9Y4E1 1318 aa21.7■■□□□ 1.06
RTN3-205ENST00000356000 DDX10Q13206 875 aaKnown RBP21.69■■□□□ 1.06
RTN3-205ENST00000356000 IRX6P78412 446 aaPredicted RBP21.69■■□□□ 1.06
RTN3-205ENST00000356000 IPO9Q96P70 1041 aaKnown RBP21.69■■□□□ 1.06
RTN3-205ENST00000356000 DAXXQ9UER7 740 aaPredicted RBP21.68■■□□□ 1.06
RTN3-205ENST00000356000 GAPVD1Q14C86 1478 aa21.67■■□□□ 1.06
RTN3-205ENST00000356000 PPP1R15AO75807 674 aaPredicted RBP21.67■■□□□ 1.06
RTN3-205ENST00000356000 TDRD9Q8NDG6 1382 aaKnown RBP21.65■■□□□ 1.06
RTN3-205ENST00000356000 BIVM-ERCC5R4GMW8 1640 aa21.64■■□□□ 1.05
RTN3-205ENST00000356000 CHMP7Q8WUX9 453 aaPredicted RBP21.63■■□□□ 1.05
RTN3-205ENST00000356000 PLEKHG5O94827 1062 aa21.62■■□□□ 1.05
RTN3-205ENST00000356000 ZBTB47Q9UFB7 747 aaPredicted RBP21.62■■□□□ 1.05
RTN3-205ENST00000356000 UBTFP17480 764 aaKnown RBP21.61■■□□□ 1.05
RTN3-205ENST00000356000 USP35Q9P2H5 1018 aa21.6■■□□□ 1.05
RTN3-205ENST00000356000 ANP32AP39687 249 aaKnown RBP21.6■■□□□ 1.05
RTN3-205ENST00000356000 PODXL2Q9NZ53 605 aa21.6■■□□□ 1.05
RTN3-205ENST00000356000 RSPH6AQ9H0K4 717 aa21.59■■□□□ 1.05
RTN3-205ENST00000356000 EEA1Q15075 1411 aa21.59■■□□□ 1.05
RTN3-205ENST00000356000 CYB5RLQ6IPT4 315 aa21.59■■□□□ 1.05
RTN3-205ENST00000356000 ANP32CO43423 234 aa21.58■■□□□ 1.05
RTN3-205ENST00000356000 TOP2BQ02880 1626 aa21.57■■□□□ 1.04
RTN3-205ENST00000356000 FBLN2P98095 1184 aa21.57■■□□□ 1.04
RTN3-205ENST00000356000 GOLGA3Q08378 1498 aa21.56■■□□□ 1.04
RTN3-205ENST00000356000 ERICH3Q5RHP9 1530 aa21.55■■□□□ 1.04
RTN3-205ENST00000356000 ADAMTS12P58397 1594 aa21.55■■□□□ 1.04
RTN3-205ENST00000356000 GLIPR1L2Q4G1C9 344 aa21.54■■□□□ 1.04
RTN3-205ENST00000356000 VPS8Q8N3P4 1428 aa21.52■■□□□ 1.04
RTN3-205ENST00000356000 BRPF3Q9ULD4 1205 aa21.52■■□□□ 1.04
RTN3-205ENST00000356000 GRIN2AQ12879 1464 aa21.51■■□□□ 1.03
RTN3-205ENST00000356000 NUP160Q12769 1436 aa21.51■■□□□ 1.03
RTN3-205ENST00000356000 B4GALNT3Q6L9W6 998 aa21.51■■□□□ 1.03
RTN3-205ENST00000356000 SHROOM2Q13796 1616 aa21.5■■□□□ 1.03
RTN3-205ENST00000356000 CLIP1P30622 1438 aa21.5■■□□□ 1.03
RTN3-205ENST00000356000 FHAD1B1AJZ9 1412 aa21.49■■□□□ 1.03
RTN3-205ENST00000356000 ZMYND15Q9H091 742 aa21.48■■□□□ 1.03
RTN3-205ENST00000356000 TIMELESSQ9UNS1 1208 aa21.46■■□□□ 1.03
RTN3-205ENST00000356000 NEFMP07197 916 aa21.45■■□□□ 1.02
RTN3-205ENST00000356000 HNRNPUQ00839 825 aaKnown RBP eCLIP21.45■■□□□ 1.02
RTN3-205ENST00000356000 TRHP20396 242 aaPredicted RBP21.4■■□□□ 1.02
RTN3-205ENST00000356000 CEP170Q5SW79 1584 aa21.38■■□□□ 1.01
RTN3-205ENST00000356000 VSIG10Q8N0Z9 540 aa21.37■■□□□ 1.01
RTN3-205ENST00000356000 RUSC2Q8N2Y8 1516 aa21.36■■□□□ 1.01
RTN3-205ENST00000356000 MAPKBP1O60336 1514 aa21.36■■□□□ 1.01
RTN3-205ENST00000356000 FAM43AQ8N2R8 423 aa21.35■■□□□ 1.01
RTN3-205ENST00000356000 GSE1Q14687 1217 aa21.34■■□□□ 1.01
RTN3-205ENST00000356000 PPM1GO15355 546 aaPredicted RBP21.34■■□□□ 1.01
RTN3-205ENST00000356000 LAS1LQ9Y4W2 734 aaKnown RBP21.3■■□□□ 1
RTN3-205ENST00000356000 RRBP1Q9P2E9 1410 aaKnown RBP21.28■■□□□ 1
RTN3-205ENST00000356000 CUL7Q14999 1698 aa21.26■□□□□ 0.99
RTN3-205ENST00000356000 KIF21BO75037 1637 aa21.24■□□□□ 0.99
RTN3-205ENST00000356000 HIRIP3Q9BW71 556 aaPredicted RBP21.18■□□□□ 0.98
RTN3-205ENST00000356000 FRAT1Q92837 279 aaPredicted RBP21.17■□□□□ 0.98
RTN3-205ENST00000356000 ERCC6L2Q5T890 1561 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms