RNA–Protein interactions for RNA: ENST00000334348.7

UPK3B-202, Transcript of uroplakin 3B, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene UPK3B, Length 2,373 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3B-202ENST00000334348 PRXQ9BXM0 1461 aa23.25■■□□□ 1.31
UPK3B-202ENST00000334348 TOPBP1Q92547 1522 aa23.24■■□□□ 1.31
UPK3B-202ENST00000334348 TOP2BQ02880 1626 aa23.23■■□□□ 1.31
UPK3B-202ENST00000334348 CCNB3Q8WWL7 1395 aa23.22■■□□□ 1.31
UPK3B-202ENST00000334348 BIVM-ERCC5R4GMW8 1640 aa23.2■■□□□ 1.3
UPK3B-202ENST00000334348 FKBP8Q14318 412 aa23.19■■□□□ 1.3
UPK3B-202ENST00000334348 WDR62O43379 1518 aa23.18■■□□□ 1.3
UPK3B-202ENST00000334348 BCANQ96GW7 911 aa23.18■■□□□ 1.3
UPK3B-202ENST00000334348 DNMBPQ6XZF7 1577 aa23.17■■□□□ 1.3
UPK3B-202ENST00000334348 MAPKBP1O60336 1514 aa23.12■■□□□ 1.29
UPK3B-202ENST00000334348 FGD5Q6ZNL6 1462 aa23.12■■□□□ 1.29
UPK3B-202ENST00000334348 RAD54L2Q9Y4B4 1467 aa23.11■■□□□ 1.29
UPK3B-202ENST00000334348 POLA1P09884 1462 aaPredicted RBP23.1■■□□□ 1.29
UPK3B-202ENST00000334348 RAB3GAP2Q9H2M9 1393 aa23.1■■□□□ 1.29
UPK3B-202ENST00000334348 RBM19Q9Y4C8 960 aaKnown RBP23.09■■□□□ 1.29
UPK3B-202ENST00000334348 NEFLP07196 543 aa23.06■■□□□ 1.28
UPK3B-202ENST00000334348 DDX10Q13206 875 aaKnown RBP23.05■■□□□ 1.28
UPK3B-202ENST00000334348 PPP1R15AO75807 674 aaPredicted RBP23.03■■□□□ 1.28
UPK3B-202ENST00000334348 ITGAEP38570 1179 aa23.02■■□□□ 1.28
UPK3B-202ENST00000334348 CCER2I3L3R5 266 aa23.01■■□□□ 1.27
UPK3B-202ENST00000334348 ARHGAP35Q9NRY4 1499 aa23■■□□□ 1.27
UPK3B-202ENST00000334348 SETD5Q9C0A6 1442 aa22.99■■□□□ 1.27
UPK3B-202ENST00000334348 WDR97A6NE52 1622 aa22.99■■□□□ 1.27
UPK3B-202ENST00000334348 TIMELESSQ9UNS1 1208 aa22.97■■□□□ 1.27
UPK3B-202ENST00000334348 ZNF608Q9ULD9 1512 aaPredicted RBP22.96■■□□□ 1.27
UPK3B-202ENST00000334348 KIF27Q86VH2 1401 aa22.96■■□□□ 1.27
UPK3B-202ENST00000334348 TDRD9Q8NDG6 1382 aaKnown RBP22.95■■□□□ 1.26
UPK3B-202ENST00000334348 MAP3K1Q13233 1512 aa22.94■■□□□ 1.26
UPK3B-202ENST00000334348 TARBP1Q13395 1621 aaKnown RBP22.93■■□□□ 1.26
UPK3B-202ENST00000334348 AQRO60306 1485 aaKnown RBP eCLIP22.9■■□□□ 1.26
UPK3B-202ENST00000334348 ANP32CO43423 234 aa22.89■■□□□ 1.26
UPK3B-202ENST00000334348 SIN3AQ96ST3 1273 aa22.89■■□□□ 1.26
UPK3B-202ENST00000334348 IFT140Q96RY7 1462 aa22.88■■□□□ 1.25
UPK3B-202ENST00000334348 TRIM52Q96A61 297 aa22.87■■□□□ 1.25
UPK3B-202ENST00000334348 TIAM1Q13009 1591 aa22.87■■□□□ 1.25
UPK3B-202ENST00000334348 MSH5O43196 834 aa22.83■■□□□ 1.25
UPK3B-202ENST00000334348 ABCA10Q8WWZ4 1543 aa22.83■■□□□ 1.24
UPK3B-202ENST00000334348 FANCIQ9NVI1 1328 aa22.81■■□□□ 1.24
UPK3B-202ENST00000334348 LRRC9Q6ZRR7 1453 aa22.8■■□□□ 1.24
UPK3B-202ENST00000334348 PHLDB1Q86UU1 1377 aa22.78■■□□□ 1.24
UPK3B-202ENST00000334348 EIF4G3O43432 1585 aaKnown RBP22.76■■□□□ 1.23
UPK3B-202ENST00000334348 HIRIP3Q9BW71 556 aaPredicted RBP22.74■■□□□ 1.23
UPK3B-202ENST00000334348 GAPVD1Q14C86 1478 aa22.73■■□□□ 1.23
UPK3B-202ENST00000334348 FAM50AQ14320 339 aaKnown RBP22.72■■□□□ 1.23
UPK3B-202ENST00000334348 ABCA5Q8WWZ7 1642 aa22.7■■□□□ 1.22
UPK3B-202ENST00000334348 CDK11AQ9UQ88 783 aaPredicted RBP22.69■■□□□ 1.22
UPK3B-202ENST00000334348 IGF1RP08069 1367 aa22.66■■□□□ 1.22
UPK3B-202ENST00000334348 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.65■■□□□ 1.22
UPK3B-202ENST00000334348 FHAD1B1AJZ9 1412 aa22.65■■□□□ 1.22
UPK3B-202ENST00000334348 ERICH6BQ5W0A0 696 aa22.63■■□□□ 1.21
UPK3B-202ENST00000334348 CFAP43Q8NDM7 1665 aa22.62■■□□□ 1.21
UPK3B-202ENST00000334348 ERICH6Q7L0X2 663 aa22.62■■□□□ 1.21
UPK3B-202ENST00000334348 TONSLQ96HA7 1378 aa22.61■■□□□ 1.21
UPK3B-202ENST00000334348 FBLN2P98095 1184 aa22.61■■□□□ 1.21
UPK3B-202ENST00000334348 GRIN2BQ13224 1484 aa22.6■■□□□ 1.21
UPK3B-202ENST00000334348 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
UPK3B-202ENST00000334348 PBRM1Q86U86 1689 aa22.6■■□□□ 1.21
UPK3B-202ENST00000334348 HNRNPUQ00839 825 aaKnown RBP eCLIP22.58■■□□□ 1.21
UPK3B-202ENST00000334348 MYT1LQ9UL68 1186 aa22.58■■□□□ 1.21
UPK3B-202ENST00000334348 CARMIL1Q5VZK9 1371 aa22.57■■□□□ 1.2
UPK3B-202ENST00000334348 PCF11O94913 1555 aaKnown RBP22.53■■□□□ 1.2
UPK3B-202ENST00000334348 IRX6P78412 446 aaPredicted RBP22.52■■□□□ 1.19
UPK3B-202ENST00000334348 PPP4R2Q9NY27 417 aa22.51■■□□□ 1.19
UPK3B-202ENST00000334348 CHMP7Q8WUX9 453 aaPredicted RBP22.49■■□□□ 1.19
UPK3B-202ENST00000334348 UACAQ9BZF9 1416 aa22.48■■□□□ 1.19
UPK3B-202ENST00000334348 CCDC18Q5T9S5 1454 aa22.46■■□□□ 1.19
UPK3B-202ENST00000334348 FYCO1Q9BQS8 1478 aa22.46■■□□□ 1.19
UPK3B-202ENST00000334348 CUL7Q14999 1698 aa22.45■■□□□ 1.18
UPK3B-202ENST00000334348 ADAMTS12P58397 1594 aa22.45■■□□□ 1.18
UPK3B-202ENST00000334348 MAGI1Q96QZ7 1491 aaPredicted RBP22.45■■□□□ 1.18
UPK3B-202ENST00000334348 HFM1A2PYH4 1435 aa22.44■■□□□ 1.18
UPK3B-202ENST00000334348 FGD6Q6ZV73 1430 aa22.43■■□□□ 1.18
UPK3B-202ENST00000334348 CASKIN1Q8WXD9 1431 aa22.42■■□□□ 1.18
UPK3B-202ENST00000334348 ATP1B4Q9UN42 357 aaPredicted RBP22.42■■□□□ 1.18
UPK3B-202ENST00000334348 KDM5BQ9UGL1 1544 aa22.41■■□□□ 1.18
UPK3B-202ENST00000334348 SYNJ2O15056 1496 aa22.41■■□□□ 1.18
UPK3B-202ENST00000334348 P3H3Q8IVL6 736 aa22.4■■□□□ 1.18
UPK3B-202ENST00000334348 CHD1O14646 1710 aa22.39■■□□□ 1.18
UPK3B-202ENST00000334348 WASHC2AQ641Q2 1341 aa22.38■■□□□ 1.17
UPK3B-202ENST00000334348 FHOD3Q2V2M9 1422 aa22.37■■□□□ 1.17
UPK3B-202ENST00000334348 PTPN23Q9H3S7 1636 aa22.37■■□□□ 1.17
UPK3B-202ENST00000334348 GRIN2AQ12879 1464 aa22.36■■□□□ 1.17
UPK3B-202ENST00000334348 EFCAB5A4FU69 1503 aa22.36■■□□□ 1.17
UPK3B-202ENST00000334348 PTPRKQ15262 1439 aa22.35■■□□□ 1.17
UPK3B-202ENST00000334348 DEKP35659 375 aaKnown RBP22.35■■□□□ 1.17
UPK3B-202ENST00000334348 NCOA2Q15596 1464 aa22.34■■□□□ 1.17
UPK3B-202ENST00000334348 HSPA5P11021 654 aaKnown RBP22.34■■□□□ 1.17
UPK3B-202ENST00000334348 NAIPQ13075 1403 aa22.33■■□□□ 1.17
UPK3B-202ENST00000334348 CNTLNQ9NXG0 1405 aa22.31■■□□□ 1.16
UPK3B-202ENST00000334348 ZBED9Q6R2W3 1325 aa22.29■■□□□ 1.16
UPK3B-202ENST00000334348 B4GALNT3Q6L9W6 998 aa22.29■■□□□ 1.16
UPK3B-202ENST00000334348 CCDC184Q52MB2 194 aa22.28■■□□□ 1.16
UPK3B-202ENST00000334348 CEP170Q5SW79 1584 aa22.27■■□□□ 1.16
UPK3B-202ENST00000334348 EIF4G2P78344 907 aaKnown RBP eCLIP22.27■■□□□ 1.16
UPK3B-202ENST00000334348 FMN1Q68DA7 1419 aa22.27■■□□□ 1.16
UPK3B-202ENST00000334348 OSCARQ8IYS5 282 aa22.27■■□□□ 1.16
UPK3B-202ENST00000334348 NOP58Q9Y2X3 529 aaKnown RBP22.27■■□□□ 1.16
UPK3B-202ENST00000334348 PRKRIP1Q9H875 184 aaPredicted RBP22.25■■□□□ 1.15
UPK3B-202ENST00000334348 MTUS2Q5JR59 1369 aa22.24■■□□□ 1.15
UPK3B-202ENST00000334348 CTTNBP2Q8WZ74 1663 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms