RNA–Protein interactions for RNA: ENST00000331728.8

LIMK2-201, Transcript of LIM domain kinase 2, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIMK2, Length 3,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2-201ENST00000331728 HIRIP3Q9BW71 556 aaPredicted RBP12.29□□□□□ -0.44
LIMK2-201ENST00000331728 CUX1P39880 1505 aa12.28□□□□□ -0.44
LIMK2-201ENST00000331728 BIVM-ERCC5R4GMW8 1640 aa12.28□□□□□ -0.44
LIMK2-201ENST00000331728 TONSLQ96HA7 1378 aa12.27□□□□□ -0.45
LIMK2-201ENST00000331728 FHAD1B1AJZ9 1412 aa12.26□□□□□ -0.45
LIMK2-201ENST00000331728 TRIM52Q96A61 297 aa12.25□□□□□ -0.45
LIMK2-201ENST00000331728 NCAPD3P42695 1498 aa12.24□□□□□ -0.45
LIMK2-201ENST00000331728 BCL11AQ9H165 835 aa12.22□□□□□ -0.45
LIMK2-201ENST00000331728 IGF1RP08069 1367 aa12.22□□□□□ -0.45
LIMK2-201ENST00000331728 MAPKBP1O60336 1514 aa12.21□□□□□ -0.45
LIMK2-201ENST00000331728 HMGXB3Q12766 1538 aa12.21□□□□□ -0.46
LIMK2-201ENST00000331728 CFTRP13569 1480 aa12.2□□□□□ -0.46
LIMK2-201ENST00000331728 ERICH6Q7L0X2 663 aa12.2□□□□□ -0.46
LIMK2-201ENST00000331728 TIMELESSQ9UNS1 1208 aa12.2□□□□□ -0.46
LIMK2-201ENST00000331728 PHLDB1Q86UU1 1377 aa12.19□□□□□ -0.46
LIMK2-201ENST00000331728 MTUS2Q5JR59 1369 aa12.19□□□□□ -0.46
LIMK2-201ENST00000331728 RBM19Q9Y4C8 960 aaKnown RBP12.18□□□□□ -0.46
LIMK2-201ENST00000331728 LRRC9Q6ZRR7 1453 aa12.18□□□□□ -0.46
LIMK2-201ENST00000331728 WDR97A6NE52 1622 aa12.17□□□□□ -0.46
LIMK2-201ENST00000331728 TIAM1Q13009 1591 aa12.17□□□□□ -0.46
LIMK2-201ENST00000331728 CCER2I3L3R5 266 aa12.17□□□□□ -0.46
LIMK2-201ENST00000331728 FHOD3Q2V2M9 1422 aa12.16□□□□□ -0.46
LIMK2-201ENST00000331728 CADPSQ9ULU8 1353 aa12.15□□□□□ -0.46
LIMK2-201ENST00000331728 PPP1R15AO75807 674 aaPredicted RBP12.15□□□□□ -0.46
LIMK2-201ENST00000331728 HNRNPUQ00839 825 aaKnown RBP eCLIP12.15□□□□□ -0.47
LIMK2-201ENST00000331728 FGD5Q6ZNL6 1462 aa12.14□□□□□ -0.47
LIMK2-201ENST00000331728 MAP3K1Q13233 1512 aa12.12□□□□□ -0.47
LIMK2-201ENST00000331728 CDK11AQ9UQ88 783 aaPredicted RBP12.1□□□□□ -0.47
LIMK2-201ENST00000331728 CHIC2Q9UKJ5 165 aa12.09□□□□□ -0.47
LIMK2-201ENST00000331728 RRP7BPQ9NSQ0 103 aa12.07□□□□□ -0.48
LIMK2-201ENST00000331728 IRX6P78412 446 aaPredicted RBP12.07□□□□□ -0.48
LIMK2-201ENST00000331728 FMN1Q68DA7 1419 aa12.07□□□□□ -0.48
LIMK2-201ENST00000331728 PCF11O94913 1555 aaKnown RBP12.05□□□□□ -0.48
LIMK2-201ENST00000331728 CCDC18Q5T9S5 1454 aa12.05□□□□□ -0.48
LIMK2-201ENST00000331728 ARID3CA6NKF2 412 aa12.04□□□□□ -0.48
LIMK2-201ENST00000331728 CNGB1Q14028 1251 aaPredicted RBP12.04□□□□□ -0.48
LIMK2-201ENST00000331728 POLR3GLQ9BT43 218 aa12.04□□□□□ -0.48
LIMK2-201ENST00000331728 FGD6Q6ZV73 1430 aa12.04□□□□□ -0.48
LIMK2-201ENST00000331728 FANCD2Q9BXW9 1451 aa12.04□□□□□ -0.48
LIMK2-201ENST00000331728 FYCO1Q9BQS8 1478 aa12.03□□□□□ -0.48
LIMK2-201ENST00000331728 CASKIN1Q8WXD9 1431 aa12.03□□□□□ -0.48
LIMK2-201ENST00000331728 EIF4G2P78344 907 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIMK2-201ENST00000331728 RAD54L2Q9Y4B4 1467 aa12.02□□□□□ -0.49
LIMK2-201ENST00000331728 CFAP43Q8NDM7 1665 aa12.01□□□□□ -0.49
LIMK2-201ENST00000331728 FAM9BQ8IZU0 186 aa12.01□□□□□ -0.49
LIMK2-201ENST00000331728 FANCIQ9NVI1 1328 aa12.01□□□□□ -0.49
LIMK2-201ENST00000331728 MSH5O43196 834 aa12□□□□□ -0.49
LIMK2-201ENST00000331728 UACAQ9BZF9 1416 aa11.99□□□□□ -0.49
LIMK2-201ENST00000331728 EFCAB5A4FU69 1503 aa11.99□□□□□ -0.49
LIMK2-201ENST00000331728 HSPA5P11021 654 aaKnown RBP11.99□□□□□ -0.49
LIMK2-201ENST00000331728 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.98□□□□□ -0.49
LIMK2-201ENST00000331728 MRS2Q9HD23 443 aa11.98□□□□□ -0.49
LIMK2-201ENST00000331728 TDRD9Q8NDG6 1382 aaKnown RBP11.96□□□□□ -0.49
LIMK2-201ENST00000331728 HFM1A2PYH4 1435 aa11.95□□□□□ -0.5
LIMK2-201ENST00000331728 ZNF326Q5BKZ1 582 aaKnown RBP11.95□□□□□ -0.5
LIMK2-201ENST00000331728 MYOM3Q5VTT5 1437 aa11.94□□□□□ -0.5
LIMK2-201ENST00000331728 ERICH6BQ5W0A0 696 aa11.94□□□□□ -0.5
LIMK2-201ENST00000331728 AQRO60306 1485 aaKnown RBP eCLIP11.94□□□□□ -0.53e-8■■■■■ 62
LIMK2-201ENST00000331728 POLA1P09884 1462 aaPredicted RBP11.93□□□□□ -0.5
LIMK2-201ENST00000331728 NCOA2Q15596 1464 aa11.93□□□□□ -0.5
LIMK2-201ENST00000331728 MYT1LQ9UL68 1186 aa11.92□□□□□ -0.5
LIMK2-201ENST00000331728 PPP4R2Q9NY27 417 aa11.92□□□□□ -0.5
LIMK2-201ENST00000331728 ABCA10Q8WWZ4 1543 aa11.92□□□□□ -0.5
LIMK2-201ENST00000331728 TOPBP1Q92547 1522 aa11.91□□□□□ -0.5
LIMK2-201ENST00000331728 PRDM2Q13029 1718 aa11.91□□□□□ -0.5
LIMK2-201ENST00000331728 DNMBPQ6XZF7 1577 aa11.91□□□□□ -0.5
LIMK2-201ENST00000331728 FOXD1Q16676 465 aa11.9□□□□□ -0.5
LIMK2-201ENST00000331728 MPHOSPH9Q99550 1183 aa11.9□□□□□ -0.5
LIMK2-201ENST00000331728 NAIPQ13075 1403 aa11.9□□□□□ -0.5
LIMK2-201ENST00000331728 SLC4A1APQ9BWU0 796 aaKnown RBP11.9□□□□□ -0.51
LIMK2-201ENST00000331728 L3MBTL2Q969R5 705 aa11.89□□□□□ -0.51
LIMK2-201ENST00000331728 WASHC2AQ641Q2 1341 aa11.88□□□□□ -0.51
LIMK2-201ENST00000331728 PTPN23Q9H3S7 1636 aa11.87□□□□□ -0.51
LIMK2-201ENST00000331728 PTPRKQ15262 1439 aa11.87□□□□□ -0.51
LIMK2-201ENST00000331728 CUL7Q14999 1698 aa11.87□□□□□ -0.51
LIMK2-201ENST00000331728 B4GALNT3Q6L9W6 998 aa11.86□□□□□ -0.51
LIMK2-201ENST00000331728 NESP48681 1621 aa11.86□□□□□ -0.51
LIMK2-201ENST00000331728 CC2D2AQ9P2K1 1620 aa11.86□□□□□ -0.51
LIMK2-201ENST00000331728 GAPVD1Q14C86 1478 aa11.86□□□□□ -0.51
LIMK2-201ENST00000331728 EHBP1L1Q8N3D4 1523 aa11.85□□□□□ -0.51
LIMK2-201ENST00000331728 ZNF777Q9ULD5 760 aaPredicted RBP11.85□□□□□ -0.51
LIMK2-201ENST00000331728 PRKRIP1Q9H875 184 aaPredicted RBP11.84□□□□□ -0.51
LIMK2-201ENST00000331728 CNTLNQ9NXG0 1405 aa11.84□□□□□ -0.51
LIMK2-201ENST00000331728 SUPT6HQ7KZ85 1726 aaKnown RBP11.83□□□□□ -0.51
LIMK2-201ENST00000331728 SNAPC4Q5SXM2 1469 aa11.82□□□□□ -0.52
LIMK2-201ENST00000331728 CCDC136Q96JN2 1154 aa11.81□□□□□ -0.52
LIMK2-201ENST00000331728 CCDC7Q96M83 1385 aa11.81□□□□□ -0.52
LIMK2-201ENST00000331728 PDS5BQ9NTI5 1447 aa11.81□□□□□ -0.52
LIMK2-201ENST00000331728 CTTNBP2Q8WZ74 1663 aa11.81□□□□□ -0.52
LIMK2-201ENST00000331728 DEKP35659 375 aaKnown RBP11.8□□□□□ -0.52
LIMK2-201ENST00000331728 KDM5BQ9UGL1 1544 aa11.8□□□□□ -0.52
LIMK2-201ENST00000331728 ZBED9Q6R2W3 1325 aa11.79□□□□□ -0.52
LIMK2-201ENST00000331728 ANP32AP39687 249 aaKnown RBP11.79□□□□□ -0.52
LIMK2-201ENST00000331728 CCDC184Q52MB2 194 aa11.79□□□□□ -0.52
LIMK2-201ENST00000331728 TMC1Q8TDI8 760 aa11.79□□□□□ -0.52
LIMK2-201ENST00000331728 SENP3-EIF4A1A0A087X0R7 540 aa11.79□□□□□ -0.52
LIMK2-201ENST00000331728 NOP58Q9Y2X3 529 aaKnown RBP11.78□□□□□ -0.52
LIMK2-201ENST00000331728 GRIN2BQ13224 1484 aa11.78□□□□□ -0.52
LIMK2-201ENST00000331728 RTL5Q5HYW3 569 aaPredicted RBP11.78□□□□□ -0.52
LIMK2-201ENST00000331728 CFDP1Q9UEE9 299 aaPredicted RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms