RNA–Protein interactions for RNA: ENST00000331728.8

LIMK2-201, Transcript of LIM domain kinase 2, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIMK2, Length 3,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2-201ENST00000331728 NISCHQ9Y2I1 1504 aa16.97■□□□□ 0.31
LIMK2-201ENST00000331728 SHROOM4Q9ULL8 1493 aa15□□□□□ -0.01
LIMK2-201ENST00000331728 SUPT5HO00267 1087 aaKnown RBP14.89□□□□□ -0.03
LIMK2-201ENST00000331728 DCAF8L2P0C7V8 631 aa14.66□□□□□ -0.06
LIMK2-201ENST00000331728 HRCP23327 699 aa14.42□□□□□ -0.1
LIMK2-201ENST00000331728 ZCCHC6Q5VYS8 1495 aaKnown RBP14.34□□□□□ -0.11
LIMK2-201ENST00000331728 CHIC1Q5VXU3 224 aa14.31□□□□□ -0.12
LIMK2-201ENST00000331728 PCGF6Q9BYE7 350 aa14.26□□□□□ -0.13
LIMK2-201ENST00000331728 MYO15BQ96JP2 1530 aa14.25□□□□□ -0.13
LIMK2-201ENST00000331728 CCDC180Q9P1Z9 1646 aa14.2□□□□□ -0.14
LIMK2-201ENST00000331728 PPARGC1BQ86YN6 1023 aaKnown RBP14.06□□□□□ -0.16
LIMK2-201ENST00000331728 DCAF1Q9Y4B6 1507 aa14□□□□□ -0.17
LIMK2-201ENST00000331728 LOC105371045A0A1W2PR82 267 aa13.98□□□□□ -0.17
LIMK2-201ENST00000331728 TRIM26Q12899 539 aaPredicted RBP13.86□□□□□ -0.19
LIMK2-201ENST00000331728 FAM9AQ8IZU1 332 aaPredicted RBP13.82□□□□□ -0.2
LIMK2-201ENST00000331728 TRIM41Q8WV44 630 aa13.82□□□□□ -0.2
LIMK2-201ENST00000331728 EHMT2Q96KQ7 1210 aa13.8□□□□□ -0.2
LIMK2-201ENST00000331728 ZEB1P37275 1124 aaPredicted RBP13.74□□□□□ -0.21
LIMK2-201ENST00000331728 PELP1Q8IZL8 1130 aaKnown RBP13.72□□□□□ -0.21
LIMK2-201ENST00000331728 SCRIBQ14160 1630 aa13.58□□□□□ -0.23
LIMK2-201ENST00000331728 ABCC9O60706 1549 aa13.55□□□□□ -0.24
LIMK2-201ENST00000331728 RSF1Q96T23 1441 aaPredicted RBP13.55□□□□□ -0.24
LIMK2-201ENST00000331728 SCAF1Q9H7N4 1312 aaKnown RBP13.49□□□□□ -0.25
LIMK2-201ENST00000331728 CCER1Q8TC90 406 aaPredicted RBP13.44□□□□□ -0.26
LIMK2-201ENST00000331728 TTBK1Q5TCY1 1321 aaPredicted RBP13.4□□□□□ -0.26
LIMK2-201ENST00000331728 RB1CC1Q8TDY2 1594 aa13.4□□□□□ -0.26
LIMK2-201ENST00000331728 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.34□□□□□ -0.27
LIMK2-201ENST00000331728 ACIN1Q9UKV3 1341 aaKnown RBP13.28□□□□□ -0.28
LIMK2-201ENST00000331728 CECR2Q9BXF3 1484 aa13.27□□□□□ -0.28
LIMK2-201ENST00000331728 CENPBP07199 599 aaPredicted RBP13.25□□□□□ -0.29
LIMK2-201ENST00000331728 UBTFP17480 764 aaKnown RBP13.23□□□□□ -0.29
LIMK2-201ENST00000331728 NACADO15069 1562 aa13.22□□□□□ -0.29
LIMK2-201ENST00000331728 MROH2BQ7Z745 1585 aa13.21□□□□□ -0.29
LIMK2-201ENST00000331728 NEUROD1Q13562 356 aa13.21□□□□□ -0.3
LIMK2-201ENST00000331728 DIEXFQ68CQ4 756 aaKnown RBP13.17□□□□□ -0.3
LIMK2-201ENST00000331728 MYT1Q01538 1121 aa13.16□□□□□ -0.3
LIMK2-201ENST00000331728 GTF3C3Q9Y5Q9 886 aa13.15□□□□□ -0.31
LIMK2-201ENST00000331728 WIZO95785 1651 aa13.12□□□□□ -0.31
LIMK2-201ENST00000331728 APLP2Q06481 763 aa13.11□□□□□ -0.31
LIMK2-201ENST00000331728 BAZ1AQ9NRL2 1556 aaPredicted RBP13.07□□□□□ -0.32
LIMK2-201ENST00000331728 CSRNP3Q8WYN3 585 aa13.05□□□□□ -0.32
LIMK2-201ENST00000331728 YTHDC1Q96MU7 727 aaKnown RBP13.04□□□□□ -0.32
LIMK2-201ENST00000331728 CEP162Q5TB80 1403 aa13.04□□□□□ -0.32
LIMK2-201ENST00000331728 RANGAP1P46060 587 aaPredicted RBP13.03□□□□□ -0.32
LIMK2-201ENST00000331728 HNRNPUL2Q1KMD3 747 aaKnown RBP13.02□□□□□ -0.32
LIMK2-201ENST00000331728 WRNQ14191 1432 aaPredicted RBP eCLIP12.99□□□□□ -0.33
LIMK2-201ENST00000331728 ABCC8Q09428 1581 aa12.99□□□□□ -0.33
LIMK2-201ENST00000331728 ZNF316A6NFI3 1004 aaPredicted RBP12.98□□□□□ -0.33
LIMK2-201ENST00000331728 CCDC88BA6NC98 1476 aa12.98□□□□□ -0.33
LIMK2-201ENST00000331728 TNIKQ9UKE5 1360 aa12.97□□□□□ -0.33
LIMK2-201ENST00000331728 SOGA1O94964 1423 aa12.95□□□□□ -0.34
LIMK2-201ENST00000331728 EEA1Q15075 1411 aa12.95□□□□□ -0.34
LIMK2-201ENST00000331728 TOP2AP11388 1531 aaKnown RBP12.94□□□□□ -0.34
LIMK2-201ENST00000331728 PABPN1Q86U42 306 aaKnown RBP eCLIP12.94□□□□□ -0.34
LIMK2-201ENST00000331728 EIF4G1Q04637 1599 aaKnown RBP12.94□□□□□ -0.34
LIMK2-201ENST00000331728 GOLGA3Q08378 1498 aa12.9□□□□□ -0.34
LIMK2-201ENST00000331728 SMARCA4P51532 1647 aa12.86□□□□□ -0.35
LIMK2-201ENST00000331728 SMARCA2P51531 1590 aa12.84□□□□□ -0.35
LIMK2-201ENST00000331728 CLIP1P30622 1438 aa12.82□□□□□ -0.36
LIMK2-201ENST00000331728 MIER1Q8N108 512 aa12.81□□□□□ -0.36
LIMK2-201ENST00000331728 RUSC2Q8N2Y8 1516 aa12.81□□□□□ -0.36
LIMK2-201ENST00000331728 CEP164Q9UPV0 1460 aa12.8□□□□□ -0.36
LIMK2-201ENST00000331728 VPS8Q8N3P4 1428 aa12.71□□□□□ -0.38
LIMK2-201ENST00000331728 ITGAEP38570 1179 aa12.69□□□□□ -0.38
LIMK2-201ENST00000331728 CLSPNQ9HAW4 1339 aa12.66□□□□□ -0.38
LIMK2-201ENST00000331728 BAZ1BQ9UIG0 1483 aaKnown RBP12.66□□□□□ -0.38
LIMK2-201ENST00000331728 RAPGEF2Q9Y4G8 1499 aa12.62□□□□□ -0.39
LIMK2-201ENST00000331728 KIF21BO75037 1637 aa12.61□□□□□ -0.39
LIMK2-201ENST00000331728 SYNJ1O43426 1573 aa12.59□□□□□ -0.39
LIMK2-201ENST00000331728 ATP1B4Q9UN42 357 aaPredicted RBP12.58□□□□□ -0.4
LIMK2-201ENST00000331728 ATAD2BQ9ULI0 1458 aa12.56□□□□□ -0.4
LIMK2-201ENST00000331728 SUPT16HQ9Y5B9 1047 aaKnown RBP12.56□□□□□ -0.4
LIMK2-201ENST00000331728 UNC13AQ9UPW8 1703 aa12.53□□□□□ -0.4
LIMK2-201ENST00000331728 KANK4Q5T7N3 995 aaPredicted RBP12.51□□□□□ -0.41
LIMK2-201ENST00000331728 DHX57Q6P158 1386 aaKnown RBP12.5□□□□□ -0.41
LIMK2-201ENST00000331728 FAM50AQ14320 339 aaKnown RBP12.49□□□□□ -0.41
LIMK2-201ENST00000331728 KIF27Q86VH2 1401 aa12.49□□□□□ -0.41
LIMK2-201ENST00000331728 NEFLP07196 543 aa12.47□□□□□ -0.41
LIMK2-201ENST00000331728 BICRAQ9NZM4 1560 aa12.46□□□□□ -0.41
LIMK2-201ENST00000331728 PEG3Q9GZU2 1588 aa12.46□□□□□ -0.42
LIMK2-201ENST00000331728 CCNB3Q8WWL7 1395 aa12.45□□□□□ -0.42
LIMK2-201ENST00000331728 TSHZ2Q9NRE2 1034 aa12.44□□□□□ -0.42
LIMK2-201ENST00000331728 BCANQ96GW7 911 aa12.42□□□□□ -0.42
LIMK2-201ENST00000331728 ANP32EQ9BTT0 268 aa12.41□□□□□ -0.42
LIMK2-201ENST00000331728 TOP2BQ02880 1626 aa12.4□□□□□ -0.42
LIMK2-201ENST00000331728 P3H3Q8IVL6 736 aa12.39□□□□□ -0.43
LIMK2-201ENST00000331728 ARAP1Q96P48 1450 aa12.39□□□□□ -0.43
LIMK2-201ENST00000331728 ERICH3Q5RHP9 1530 aa12.39□□□□□ -0.43
LIMK2-201ENST00000331728 DDX10Q13206 875 aaKnown RBP12.38□□□□□ -0.43
LIMK2-201ENST00000331728 PRXQ9BXM0 1461 aa12.38□□□□□ -0.43
LIMK2-201ENST00000331728 RRBP1Q9P2E9 1410 aaKnown RBP12.35□□□□□ -0.43
LIMK2-201ENST00000331728 RAB3GAP2Q9H2M9 1393 aa12.35□□□□□ -0.43
LIMK2-201ENST00000331728 ANP32CO43423 234 aa12.34□□□□□ -0.43
LIMK2-201ENST00000331728 CUX2O14529 1486 aa12.33□□□□□ -0.44
LIMK2-201ENST00000331728 FKBP8Q14318 412 aa12.32□□□□□ -0.44
LIMK2-201ENST00000331728 SIN3AQ96ST3 1273 aa12.31□□□□□ -0.44
LIMK2-201ENST00000331728 SETD5Q9C0A6 1442 aa12.3□□□□□ -0.44
LIMK2-201ENST00000331728 KCNH8Q96L42 1107 aa12.3□□□□□ -0.44
LIMK2-201ENST00000331728 ARHGAP35Q9NRY4 1499 aa12.29□□□□□ -0.44
LIMK2-201ENST00000331728 CARMIL1Q5VZK9 1371 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms