RNA–Protein interactions for RNA: ENSMUST00000139560.7

Ndc1-204, Transcript of Nucleoporin NDC1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ndc1, Length 4,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ndc1-204ENSMUST00000139560 Slc4a3P16283 1227 aa15.82■□□□□ 0.12
Ndc1-204ENSMUST00000139560 Vsig10D3YX43 558 aa15.8■□□□□ 0.12
Ndc1-204ENSMUST00000139560 Nlrp6Q91WS2 869 aa15.78■□□□□ 0.12
Ndc1-204ENSMUST00000139560 Gm13695A2AK44 830 aa15.78■□□□□ 0.12
Ndc1-204ENSMUST00000139560 BlmO88700 1416 aa15.74■□□□□ 0.11
Ndc1-204ENSMUST00000139560 Arid4bA2CG63 1314 aaKnown RBP15.71■□□□□ 0.11
Ndc1-204ENSMUST00000139560 CanxP35564 591 aaKnown RBP15.7■□□□□ 0.1
Ndc1-204ENSMUST00000139560 Hsp90aa1P07901 733 aaKnown RBP15.7■□□□□ 0.1
Ndc1-204ENSMUST00000139560 Lmod3E9QA62 571 aa15.69■□□□□ 0.1
Ndc1-204ENSMUST00000139560 ScribQ80U72 1612 aa15.69■□□□□ 0.1
Ndc1-204ENSMUST00000139560 Apbb1Q9QXJ1 710 aa15.67■□□□□ 0.1
Ndc1-204ENSMUST00000139560 Trim26Q99PN3 545 aa15.66■□□□□ 0.1
Ndc1-204ENSMUST00000139560 Setd5Q5XJV7 1441 aa15.64■□□□□ 0.09
Ndc1-204ENSMUST00000139560 Ofd1Q80Z25 1017 aa15.63■□□□□ 0.09
Ndc1-204ENSMUST00000139560 Ccer2J3QPU5 274 aa15.63■□□□□ 0.09
Ndc1-204ENSMUST00000139560 Trim30dE9PWL0 497 aa15.62■□□□□ 0.09
Ndc1-204ENSMUST00000139560 Spryd3E9Q9B3 442 aa15.61■□□□□ 0.09
Ndc1-204ENSMUST00000139560 Dbr1Q923B1 550 aa15.61■□□□□ 0.09
Ndc1-204ENSMUST00000139560 Rgl3Q3UYI5 709 aa15.61■□□□□ 0.09
Ndc1-204ENSMUST00000139560 Wwc2Q6NXJ0 1187 aa15.6■□□□□ 0.09
Ndc1-204ENSMUST00000139560 DekQ7TNV0 380 aaKnown RBP15.59■□□□□ 0.09
Ndc1-204ENSMUST00000139560 Kif15Q6P9L6 1387 aa15.58■□□□□ 0.09
Ndc1-204ENSMUST00000139560 NacadQ5SWP3 1504 aa15.56■□□□□ 0.08
Ndc1-204ENSMUST00000139560 B4galnt3Q6L8S8 986 aa15.56■□□□□ 0.08
Ndc1-204ENSMUST00000139560 Sin3aQ60520 1274 aaKnown RBP15.55■□□□□ 0.08
Ndc1-204ENSMUST00000139560 Grwd1Q810D6 446 aaKnown RBP15.54■□□□□ 0.08
Ndc1-204ENSMUST00000139560 Rsf1E9PWW9 1441 aaKnown RBP15.54■□□□□ 0.08
Ndc1-204ENSMUST00000139560 Hspa5P20029 655 aaKnown RBP15.54■□□□□ 0.08
Ndc1-204ENSMUST00000139560 Ccdc27Q3V036 639 aa15.52■□□□□ 0.08
Ndc1-204ENSMUST00000139560 Hsp90ab1P11499 724 aaKnown RBP15.49■□□□□ 0.07
Ndc1-204ENSMUST00000139560 Supt16hQ920B9 1047 aa15.48■□□□□ 0.07
Ndc1-204ENSMUST00000139560 Golga3P55937 1487 aa15.48■□□□□ 0.07
Ndc1-204ENSMUST00000139560 Armcx1Q9CX83 456 aa15.46■□□□□ 0.07
Ndc1-204ENSMUST00000139560 Neurod2Q62414 383 aa15.46■□□□□ 0.07
Ndc1-204ENSMUST00000139560 Nolc1E9Q5C9 702 aaKnown RBP15.45■□□□□ 0.06
Ndc1-204ENSMUST00000139560 Hdac5Q9Z2V6 1113 aa15.45■□□□□ 0.06
Ndc1-204ENSMUST00000139560 PrkcshO08795 521 aa15.44■□□□□ 0.06
Ndc1-204ENSMUST00000139560 Ecm2Q5FW85 670 aa15.44■□□□□ 0.06
Ndc1-204ENSMUST00000139560 Arhgap27A2AB59 869 aa15.43■□□□□ 0.06
Ndc1-204ENSMUST00000139560 Clstn2Q9ER65 966 aa15.42■□□□□ 0.06
Ndc1-204ENSMUST00000139560 Upf2A2AT37 1269 aaKnown RBP15.41■□□□□ 0.06
Ndc1-204ENSMUST00000139560 Baz1aO88379 1555 aa15.41■□□□□ 0.06
Ndc1-204ENSMUST00000139560 Kdm2aP59997 1161 aa15.41■□□□□ 0.06
Ndc1-204ENSMUST00000139560 Safb2Q80YR5 991 aaKnown RBP15.39■□□□□ 0.06
Ndc1-204ENSMUST00000139560 Irx3P81067 507 aa15.39■□□□□ 0.05
Ndc1-204ENSMUST00000139560 Trim44Q9QXA7 346 aa15.36■□□□□ 0.05
Ndc1-204ENSMUST00000139560 Plcb2A3KGF7 1181 aa15.35■□□□□ 0.05
Ndc1-204ENSMUST00000139560 Eea1Q8BL66 1411 aa15.33■□□□□ 0.05
Ndc1-204ENSMUST00000139560 Ccdc9Q8VC31 543 aaKnown RBP15.33■□□□□ 0.04
Ndc1-204ENSMUST00000139560 Exoc6Q8R313 802 aa15.31■□□□□ 0.04
Ndc1-204ENSMUST00000139560 CatipB9EKE5 520 aa15.3■□□□□ 0.04
Ndc1-204ENSMUST00000139560 Ccdc88bQ4QRL3 1481 aa15.29■□□□□ 0.04
Ndc1-204ENSMUST00000139560 ChgaP26339 463 aaKnown RBP15.29■□□□□ 0.04
Ndc1-204ENSMUST00000139560 Taok2Q6ZQ29 1240 aa15.29■□□□□ 0.04
Ndc1-204ENSMUST00000139560 Rrp7aQ9D1C9 280 aaKnown RBP15.29■□□□□ 0.04
Ndc1-204ENSMUST00000139560 Irx6Q9ER75 438 aa15.28■□□□□ 0.04
Ndc1-204ENSMUST00000139560 Card11Q8CIS0 1159 aa15.27■□□□□ 0.04
Ndc1-204ENSMUST00000139560 Mroh3A0A1D5RM54 893 aa15.27■□□□□ 0.03
Ndc1-204ENSMUST00000139560 Kdm5dQ62240 1548 aa15.26■□□□□ 0.03
Ndc1-204ENSMUST00000139560 Ccdc18Q640L5 1455 aa15.26■□□□□ 0.03
Ndc1-204ENSMUST00000139560 Ercc6F8VPZ5 1481 aa15.22■□□□□ 0.03
Ndc1-204ENSMUST00000139560 Tcerg1Q8CGF7 1100 aaKnown RBP15.22■□□□□ 0.03
Ndc1-204ENSMUST00000139560 PtmaP26350 111 aa15.2■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Chmp5Q9D7S9 219 aa15.2■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Stk24Q99KH8 431 aa15.19■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Gm20521D3Z5F7 333 aa15.18■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Cnga1P29974 684 aa15.17■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Fgd1P52734 960 aa15.17■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Srpk2O54781 681 aaKnown RBP15.17■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Ppm1gQ61074 542 aa15.17■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Dnttip2Q8R2M2 758 aaKnown RBP15.17■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Senp3Q9EP97 568 aaKnown RBP15.15■□□□□ 0.02
Ndc1-204ENSMUST00000139560 Gm6268A2A3U9 297 aa15.14■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Mtus2Q3UHD3 1353 aa15.14■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Htatsf1Q8BGC0 757 aa15.14■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Exosc9Q9JHI7 438 aaKnown RBP15.14■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Arid3cA6PWV5 409 aa15.13■□□□□ 0.01
Ndc1-204ENSMUST00000139560 NgefQ8CHT1 710 aa15.12■□□□□ 0.01
Ndc1-204ENSMUST00000139560 IqubQ8CDK3 788 aa15.11■□□□□ 0.01
Ndc1-204ENSMUST00000139560 1700019A02RikA0A087WPV9 146 aa15.11■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Dnai1Q8C0M8 701 aa15.11■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Gtf3c3Q3TMP1 882 aa15.1■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Ipo9Q91YE6 1041 aa15.09■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Cluap1Q8R3P7 413 aa15.09■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Rundc1Q0VDN7 615 aa15.09■□□□□ 0.01
Ndc1-204ENSMUST00000139560 Pkd2O35245 966 aa15.08■□□□□ 0
Ndc1-204ENSMUST00000139560 MyclP10166 368 aa15.06■□□□□ 0
Ndc1-204ENSMUST00000139560 AU015836B2RUM3 263 aa15.05■□□□□ 0
Ndc1-204ENSMUST00000139560 Aebp1Q640N1 1128 aa15.05■□□□□ 0
Ndc1-204ENSMUST00000139560 Rwdd1Q9CQK7 243 aa15.05■□□□□ -0
Ndc1-204ENSMUST00000139560 Speer4f1Q9D5Q6 258 aa15.05■□□□□ -0
Ndc1-204ENSMUST00000139560 Erich6bQ9D4S6 220 aa15.05■□□□□ -0
Ndc1-204ENSMUST00000139560 Cep162Q6ZQ06 1403 aa15.04■□□□□ -0
Ndc1-204ENSMUST00000139560 Kif27Q7M6Z4 1394 aa15.04■□□□□ -0
Ndc1-204ENSMUST00000139560 Cwc22Q8C5N3 908 aaKnown RBP15.04■□□□□ -0
Ndc1-204ENSMUST00000139560 Pak3Q61036 559 aa15.04■□□□□ -0
Ndc1-204ENSMUST00000139560 Map4P27546 1125 aaKnown RBP15.03■□□□□ -0
Ndc1-204ENSMUST00000139560 Stag3O70576 1240 aa15.03■□□□□ -0
Ndc1-204ENSMUST00000139560 Cabp1Q9JLK7 227 aa15.03■□□□□ -0
Ndc1-204ENSMUST00000139560 CrbnQ8C7D2 445 aa15.02■□□□□ -0
Retrieved 100 of 22,080 RNA–protein pairs in 449.3 ms