RNA–Protein interactions for RNA: ENSMUST00000139560.7

Ndc1-204, Transcript of Nucleoporin NDC1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ndc1, Length 4,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ndc1-204ENSMUST00000139560 Rhox8Q6VSS7 320 aa20.83■□□□□ 0.93
Ndc1-204ENSMUST00000139560 Ehmt2Q9Z148 1263 aaKnown RBP19.68■□□□□ 0.74
Ndc1-204ENSMUST00000139560 Rpgrip1Q9EPQ2 1331 aa19■□□□□ 0.63
Ndc1-204ENSMUST00000139560 Ccdc136Q3TVA9 1136 aa18.63■□□□□ 0.57
Ndc1-204ENSMUST00000139560 Zeb1Q64318 1117 aa18.62■□□□□ 0.57
Ndc1-204ENSMUST00000139560 Wdr66E9Q743 1299 aa18.47■□□□□ 0.55
Ndc1-204ENSMUST00000139560 Gab3Q8BSM5 595 aa18.34■□□□□ 0.53
Ndc1-204ENSMUST00000139560 Las1lA2BE28 776 aaKnown RBP18.32■□□□□ 0.52
Ndc1-204ENSMUST00000139560 Esf1Q3V1V3 845 aaKnown RBP18.29■□□□□ 0.52
Ndc1-204ENSMUST00000139560 Cngb1E1AZ71 1325 aa18.27■□□□□ 0.52
Ndc1-204ENSMUST00000139560 Acin1Q9JIX8 1338 aaKnown RBP18.09■□□□□ 0.49
Ndc1-204ENSMUST00000139560 Trim41Q5NCC3 630 aa18.04■□□□□ 0.48
Ndc1-204ENSMUST00000139560 NischQ80TM9 1593 aa18.03■□□□□ 0.48
Ndc1-204ENSMUST00000139560 Pcgf6Q99NA9 353 aa17.95■□□□□ 0.46
Ndc1-204ENSMUST00000139560 Ube2uB1AUC4 352 aa17.84■□□□□ 0.45
Ndc1-204ENSMUST00000139560 Myt1lP97500 1187 aa17.83■□□□□ 0.44
Ndc1-204ENSMUST00000139560 Npm2Q80W85 207 aa17.82■□□□□ 0.44
Ndc1-204ENSMUST00000139560 Ppargc1bQ8VHJ7 1014 aa17.82■□□□□ 0.44
Ndc1-204ENSMUST00000139560 UbtfP25976 765 aaKnown RBP17.71■□□□□ 0.43
Ndc1-204ENSMUST00000139560 Supt5hO55201 1082 aaKnown RBP17.66■□□□□ 0.42
Ndc1-204ENSMUST00000139560 CenpbP27790 599 aa17.65■□□□□ 0.42
Ndc1-204ENSMUST00000139560 Slc24a1Q91WD8 1130 aa17.59■□□□□ 0.41
Ndc1-204ENSMUST00000139560 Amer1Q7TS75 1132 aa17.47■□□□□ 0.39
Ndc1-204ENSMUST00000139560 Pelp1Q9DBD5 1123 aaKnown RBP17.46■□□□□ 0.39
Ndc1-204ENSMUST00000139560 NefmP08553 848 aa17.44■□□□□ 0.38
Ndc1-204ENSMUST00000139560 Ttbk1Q6PCN3 1308 aa17.44■□□□□ 0.38
Ndc1-204ENSMUST00000139560 Cdk11bP24788 784 aaKnown RBP17.39■□□□□ 0.37
Ndc1-204ENSMUST00000139560 Il27Q8K3I6 234 aa17.35■□□□□ 0.37
Ndc1-204ENSMUST00000139560 Gm35339A0A140LHH9 1649 aa17.34■□□□□ 0.37
Ndc1-204ENSMUST00000139560 Nop58Q6DFW4 536 aaKnown RBP17.28■□□□□ 0.36
Ndc1-204ENSMUST00000139560 Gm38655A0A286YDK6 273 aa17.25■□□□□ 0.35
Ndc1-204ENSMUST00000139560 Neurod1Q60867 357 aa17.18■□□□□ 0.34
Ndc1-204ENSMUST00000139560 HrcG5E8J6 738 aa17.18■□□□□ 0.34
Ndc1-204ENSMUST00000139560 Abcc9P70170 1546 aa17.14■□□□□ 0.33
Ndc1-204ENSMUST00000139560 Mier1Q5UAK0 511 aa17.04■□□□□ 0.32
Ndc1-204ENSMUST00000139560 Eif5bQ05D44 1216 aaKnown RBP17.04■□□□□ 0.32
Ndc1-204ENSMUST00000139560 Zcchc6Q5BLK4 1491 aaKnown RBP17.02■□□□□ 0.31
Ndc1-204ENSMUST00000139560 Ap3b1Q9Z1T1 1105 aa17.02■□□□□ 0.31
Ndc1-204ENSMUST00000139560 Csrnp3P59055 597 aa16.97■□□□□ 0.31
Ndc1-204ENSMUST00000139560 Mapk8ip2Q9ERE9 830 aa16.96■□□□□ 0.31
Ndc1-204ENSMUST00000139560 Ccdc180J3QNE4 1664 aa16.95■□□□□ 0.3
Ndc1-204ENSMUST00000139560 Fam50aQ9WV03 339 aaKnown RBP16.94■□□□□ 0.3
Ndc1-204ENSMUST00000139560 Stra8P70278 393 aa16.92■□□□□ 0.3
Ndc1-204ENSMUST00000139560 Sall2Q9QX96 1004 aa16.91■□□□□ 0.3
Ndc1-204ENSMUST00000139560 NclP09405 707 aaKnown RBP16.91■□□□□ 0.3
Ndc1-204ENSMUST00000139560 4933416C03RikQ3V063 378 aa16.84■□□□□ 0.29
Ndc1-204ENSMUST00000139560 TonslQ6NZL6 1363 aa16.8■□□□□ 0.28
Ndc1-204ENSMUST00000139560 DiexfQ8BTT6 772 aaKnown RBP16.76■□□□□ 0.27
Ndc1-204ENSMUST00000139560 Myt1Q8CFC2 1127 aa16.76■□□□□ 0.27
Ndc1-204ENSMUST00000139560 Eid3Q3V124 375 aa16.72■□□□□ 0.27
Ndc1-204ENSMUST00000139560 Tnnt3Q9QZ47 272 aa16.72■□□□□ 0.27
Ndc1-204ENSMUST00000139560 NrdcQ8BHG1 1161 aa16.7■□□□□ 0.26
Ndc1-204ENSMUST00000139560 Plekhg3Q4VAC9 1341 aa16.67■□□□□ 0.26
Ndc1-204ENSMUST00000139560 ClspnQ80YR7 1315 aa16.59■□□□□ 0.25
Ndc1-204ENSMUST00000139560 Anks4bQ8K3X6 423 aa16.57■□□□□ 0.24
Ndc1-204ENSMUST00000139560 Lmod2Q3UHZ5 550 aa16.56■□□□□ 0.24
Ndc1-204ENSMUST00000139560 1700123L14RikQ3V2K7 440 aa16.56■□□□□ 0.24
Ndc1-204ENSMUST00000139560 Abcc8B2RUS7 1588 aa16.55■□□□□ 0.24
Ndc1-204ENSMUST00000139560 Zbtb7cQ8VCZ7 619 aa16.52■□□□□ 0.23
Ndc1-204ENSMUST00000139560 Os9Q8K2C7 672 aa16.48■□□□□ 0.23
Ndc1-204ENSMUST00000139560 Zbtb4Q5F293 982 aa16.46■□□□□ 0.23
Ndc1-204ENSMUST00000139560 Npm1Q61937 292 aaKnown RBP16.46■□□□□ 0.23
Ndc1-204ENSMUST00000139560 Chic1Q8CBW7 227 aa16.45■□□□□ 0.22
Ndc1-204ENSMUST00000139560 NeflP08551 543 aa16.44■□□□□ 0.22
Ndc1-204ENSMUST00000139560 DaxxO35613 739 aa16.41■□□□□ 0.22
Ndc1-204ENSMUST00000139560 Anp32aO35381 247 aa16.41■□□□□ 0.22
Ndc1-204ENSMUST00000139560 Aebp2Q9Z248 504 aaKnown RBP16.39■□□□□ 0.21
Ndc1-204ENSMUST00000139560 Rtl1Q7M732 1744 aa16.37■□□□□ 0.21
Ndc1-204ENSMUST00000139560 Aplp2Q06335 707 aa16.36■□□□□ 0.21
Ndc1-204ENSMUST00000139560 Ifnlr1Q8CGK5 535 aa16.35■□□□□ 0.21
Ndc1-204ENSMUST00000139560 Anp32bQ9EST5 272 aaKnown RBP16.34■□□□□ 0.21
Ndc1-204ENSMUST00000139560 ArxO35085 564 aa16.33■□□□□ 0.2
Ndc1-204ENSMUST00000139560 Hnrnpul2Q00PI9 745 aaKnown RBP16.29■□□□□ 0.2
Ndc1-204ENSMUST00000139560 Ppp4r2Q0VGB7 417 aa16.25■□□□□ 0.19
Ndc1-204ENSMUST00000139560 Fam71e1A1L3C1 212 aa16.25■□□□□ 0.19
Ndc1-204ENSMUST00000139560 Prdm10Q3UTQ7 1184 aa16.24■□□□□ 0.19
Ndc1-204ENSMUST00000139560 Fkbp15Q6P9Q6 1216 aaKnown RBP16.22■□□□□ 0.19
Ndc1-204ENSMUST00000139560 Dcaf1Q80TR8 1506 aa16.21■□□□□ 0.18
Ndc1-204ENSMUST00000139560 Rtl5Q5DTT4 599 aa16.19■□□□□ 0.18
Ndc1-204ENSMUST00000139560 SafbD3YXK2 937 aaKnown RBP16.18■□□□□ 0.18
Ndc1-204ENSMUST00000139560 Calr4Q3TQS0 420 aa16.18■□□□□ 0.18
Ndc1-204ENSMUST00000139560 4930567H17RikQ3V0K5 233 aa16.17■□□□□ 0.18
Ndc1-204ENSMUST00000139560 P3h3Q8CG70 732 aa16.09■□□□□ 0.17
Ndc1-204ENSMUST00000139560 Erich6D3Z6S9 713 aa16.07■□□□□ 0.16
Ndc1-204ENSMUST00000139560 Clip1Q922J3 1391 aa16.05■□□□□ 0.16
Ndc1-204ENSMUST00000139560 Gm13697A2AK42 830 aa16.04■□□□□ 0.16
Ndc1-204ENSMUST00000139560 Rangap1P46061 589 aaKnown RBP16.03■□□□□ 0.16
Ndc1-204ENSMUST00000139560 Brd4Q9ESU6 1400 aaKnown RBP16.02■□□□□ 0.15
Ndc1-204ENSMUST00000139560 Mrs2Q5NCE8 434 aa16.02■□□□□ 0.15
Ndc1-204ENSMUST00000139560 Polr3glQ8R0C0 218 aa16.02■□□□□ 0.15
Ndc1-204ENSMUST00000139560 Ubl4bQ9CQ84 188 aa16.01■□□□□ 0.15
Ndc1-204ENSMUST00000139560 Rad21Q61550 635 aaKnown RBP15.99■□□□□ 0.15
Ndc1-204ENSMUST00000139560 Cep164Q5DU05 1446 aa15.99■□□□□ 0.15
Ndc1-204ENSMUST00000139560 Wdr43Q6ZQL4 677 aaKnown RBP15.99■□□□□ 0.15
Ndc1-204ENSMUST00000139560 Plppr3Q7TPB0 716 aa15.98■□□□□ 0.15
Ndc1-204ENSMUST00000139560 Atp1b4Q99ME6 356 aa15.96■□□□□ 0.15
Ndc1-204ENSMUST00000139560 Chic2Q9D9G3 165 aa15.95■□□□□ 0.14
Ndc1-204ENSMUST00000139560 Bcl11aQ9QYE3 773 aa15.93■□□□□ 0.14
Ndc1-204ENSMUST00000139560 Ythdc1E9Q5K9 736 aaKnown RBP15.87■□□□□ 0.13
Ndc1-204ENSMUST00000139560 Rb1cc1Q9ESK9 1588 aa15.84■□□□□ 0.13
Retrieved 100 of 22,080 RNA–protein pairs in 16.3 ms